FFCP PHASE1:Hg19::chr8:12612962..12613049,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91694 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26302 | |||
|TSSclassifier=strong | |||
|UniProt=Q17RB8 | |||
|association_with_transcript=0bp_to_ENST00000398246,NM_152271,uc003wwd.1_5end | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_1_at_LONRF1_5end | |||
|id=chr8:12612962..12613049,- | |||
|ontology_enrichment_celltype=CL:0002057!1.24e-09!42;CL:0000860!4.26e-08!45;CL:0000766!6.43e-08!76;CL:0000738!5.20e-07!140;CL:0000557!7.50e-07!71 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.23e-09,42;CL:0002057,1.23e-09,42;CL:0000766,2.08e-09,72;CL:0000473,1.01e-08,48;CL:0000234,1.01e-08,48;CL:0000557,2.95e-08,67;CL:0000738,6.51e-08,136;CL:0002009,8.06e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;2.73e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.36e-20!115;UBERON:0005743!1.95e-13!86;UBERON:0000073!7.78e-13!94;UBERON:0001016!7.78e-13!94;UBERON:0001017!8.01e-13!82;UBERON:0002346!1.43e-11!90;UBERON:0000924!2.27e-10!173;UBERON:0006601!2.27e-10!173;UBERON:0001049!4.34e-10!57;UBERON:0005068!4.34e-10!57;UBERON:0006241!4.34e-10!57;UBERON:0007135!4.34e-10!57;UBERON:0003075!8.58e-10!86;UBERON:0007284!8.58e-10!86;UBERON:0003080!5.31e-09!42;UBERON:0004121!5.53e-09!169;UBERON:0000955!6.22e-09!69;UBERON:0006238!6.22e-09!69;UBERON:0002616!9.98e-09!59;UBERON:0002780!1.01e-08!41;UBERON:0001890!1.01e-08!41;UBERON:0006240!1.01e-08!41;UBERON:0001893!2.43e-08!34;UBERON:0002020!3.43e-08!34;UBERON:0003528!3.43e-08!34;UBERON:0002791!4.50e-08!33;UBERON:0001869!5.43e-08!32;UBERON:0003056!1.37e-07!61;UBERON:0002390!1.45e-07!102;UBERON:0003061!1.45e-07!102;UBERON:0000153!2.21e-07!129;UBERON:0007811!2.21e-07!129;UBERON:0000033!6.00e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;2.13e-07;32!UBERON:0000922;2.58e-07;49!UBERON:0001869;2.75e-07;32!UBERON:0001893;3.07e-07;34!UBERON:0003528;3.56e-07;34!UBERON:0002020;3.56e-07;34!UBERON:0007023;8.39e-07;114!UBERON:0002780;9.96e-07;41!UBERON:0001890;9.96e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.47e-20,114;UBERON:0001017,1.50e-12,81;UBERON:0001016,5.85e-12,89;UBERON:0002346,9.43e-11,86;UBERON:0004121,6.21e-10,171;UBERON:0000924,6.21e-10,171;UBERON:0006601,6.21e-10,171;UBERON:0001049,8.10e-10,56;UBERON:0005068,8.10e-10,56;UBERON:0006241,8.10e-10,56;UBERON:0007135,8.10e-10,56;UBERON:0000073,3.80e-09,53;UBERON:0002616,3.80e-09,53;UBERON:0003075,5.19e-09,82;UBERON:0007284,5.19e-09,82;UBERON:0002390,9.65e-09,98;UBERON:0003061,9.65e-09,98;UBERON:0002780,1.00e-08,41;UBERON:0001890,1.00e-08,41;UBERON:0003080,1.00e-08,41;UBERON:0006240,1.00e-08,41;UBERON:0000955,1.11e-08,68;UBERON:0006238,1.11e-08,68;UBERON:0001893,2.41e-08,34;UBERON:0003528,3.40e-08,34;UBERON:0002020,3.40e-08,34;UBERON:0001869,5.38e-08,32;UBERON:0002791,7.01e-08,32;UBERON:0003056,2.81e-07,61;UBERON:0002193,6.54e-07,108 | |||
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| |||
|short_description=p1@LONRF1 | |||
}} |
Revision as of 20:44, 22 January 2014
Short description: | p1@LONRF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LONRF1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | 0bp_to_ENST00000398246, NM_152271, uc003wwd.1_5end |
EntrezGene: | LONRF1 |
HGNC: | 26302 |
UniProt: | Q17RB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.23e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.23e-09 | 42 |
myeloid leukocyte | 2.08e-09 | 72 |
defensive cell | 1.01e-08 | 48 |
phagocyte | 1.01e-08 | 48 |
granulocyte monocyte progenitor cell | 2.95e-08 | 67 |
leukocyte | 6.51e-08 | 136 |
macrophage dendritic cell progenitor | 8.06e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.47e-20 | 114 |
central nervous system | 1.50e-12 | 81 |
nervous system | 5.85e-12 | 89 |
neurectoderm | 9.43e-11 | 86 |
ectoderm-derived structure | 6.21e-10 | 171 |
ectoderm | 6.21e-10 | 171 |
presumptive ectoderm | 6.21e-10 | 171 |
neural tube | 8.10e-10 | 56 |
neural rod | 8.10e-10 | 56 |
future spinal cord | 8.10e-10 | 56 |
neural keel | 8.10e-10 | 56 |
regional part of nervous system | 3.80e-09 | 53 |
regional part of brain | 3.80e-09 | 53 |
neural plate | 5.19e-09 | 82 |
presumptive neural plate | 5.19e-09 | 82 |
hematopoietic system | 9.65e-09 | 98 |
blood island | 9.65e-09 | 98 |
regional part of forebrain | 1.00e-08 | 41 |
forebrain | 1.00e-08 | 41 |
anterior neural tube | 1.00e-08 | 41 |
future forebrain | 1.00e-08 | 41 |
brain | 1.11e-08 | 68 |
future brain | 1.11e-08 | 68 |
telencephalon | 2.41e-08 | 34 |
brain grey matter | 3.40e-08 | 34 |
gray matter | 3.40e-08 | 34 |
cerebral hemisphere | 5.38e-08 | 32 |
regional part of telencephalon | 7.01e-08 | 32 |
pre-chordal neural plate | 2.81e-07 | 61 |
hemolymphoid system | 6.54e-07 | 108 |