FF:1551-44G8: Difference between revisions

Revision as of 10:44, 28 November 2014

Name:	eyeball, neonate N02
Species:	Mouse (Mus musculus)
Library ID:	CNhs11205
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	eyeball
dev stage	2 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005344

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11205		CAGE		DRX008961		DRR009835

Accession ID Mm9

Library id		BAM		CTSS
CNhs11205		DRZ001260		DRZ002643

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11205

0	0
1	0.171
10	0
100	0.138
1000	0.0567
1001	0.197
1002	0.274
1003	0.0359
1004	0.123
1005	0
1006	0.255
1007	0.0605
1008	0
1009	0.0059
101	0.0024
1010	0
1011	0.107
1012	0.108
1013	-0.121
1014	0.167
1015	0.164
1016	0.223
1017	0
1018	0.0389
1019	0
102	0
1020	0
1021	0.0896
1022	0.0324
1023	0
1024	5.312076e-4
1025	0
1026	0.0746
1027	0.924
1028	0
1029	0.209
103	0.38
1030	0
1031	0.278
1032	0.0575
1033	0.0104
1034	0
1035	0.0389
1036	-0.106
1037	0
1038	0.121
1039	-0.135
104	0
1040	-0.073
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11205

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.4735e-5
MA0003.1	MA0003.1	0.235
MA0004.1	MA0004.1	0.351
MA0006.1	MA0006.1	0.289
MA0007.1	MA0007.1	0.211
MA0009.1	MA0009.1	0.147
MA0014.1	MA0014.1	0.18
MA0017.1	MA0017.1	1.19383e-7
MA0018.2	MA0018.2	0.203
MA0019.1	MA0019.1	0.548
MA0024.1	MA0024.1	0.0311
MA0025.1	MA0025.1	0.102
MA0027.1	MA0027.1	0.218
MA0028.1	MA0028.1	0.222
MA0029.1	MA0029.1	0.462
MA0030.1	MA0030.1	0.884
MA0031.1	MA0031.1	0.244
MA0035.2	MA0035.2	0.00583
MA0038.1	MA0038.1	9.23695e-4
MA0039.2	MA0039.2	0.0539
MA0040.1	MA0040.1	0.101
MA0041.1	MA0041.1	0.453
MA0042.1	MA0042.1	0.909
MA0043.1	MA0043.1	0.821
MA0046.1	MA0046.1	1.19065e-21
MA0047.2	MA0047.2	1.26985e-4
MA0048.1	MA0048.1	0.483
MA0050.1	MA0050.1	2.33294e-4
MA0051.1	MA0051.1	0.00434
MA0052.1	MA0052.1	0.236
MA0055.1	MA0055.1	0.723
MA0057.1	MA0057.1	0.158
MA0058.1	MA0058.1	0.345
MA0059.1	MA0059.1	0.266
MA0060.1	MA0060.1	5.65431e-9
MA0061.1	MA0061.1	0.0223
MA0062.2	MA0062.2	0.00333
MA0065.2	MA0065.2	5.12979e-7
MA0066.1	MA0066.1	0.179
MA0067.1	MA0067.1	0.948
MA0068.1	MA0068.1	0.0333
MA0069.1	MA0069.1	0.0178
MA0070.1	MA0070.1	0.533
MA0071.1	MA0071.1	0.952
MA0072.1	MA0072.1	0.0236
MA0073.1	MA0073.1	0.608
MA0074.1	MA0074.1	0.363
MA0076.1	MA0076.1	0.588
MA0077.1	MA0077.1	0.0166
MA0078.1	MA0078.1	0.738
MA0079.2	MA0079.2	0.541
MA0080.2	MA0080.2	1.17088e-12
MA0081.1	MA0081.1	0.039
MA0083.1	MA0083.1	0.739
MA0084.1	MA0084.1	0.0758
MA0087.1	MA0087.1	0.449
MA0088.1	MA0088.1	0.0829
MA0090.1	MA0090.1	0.628
MA0091.1	MA0091.1	0.0831
MA0092.1	MA0092.1	0.418
MA0093.1	MA0093.1	0.37
MA0099.2	MA0099.2	2.10329e-5
MA0100.1	MA0100.1	0.56
MA0101.1	MA0101.1	0.0465
MA0102.2	MA0102.2	0.253
MA0103.1	MA0103.1	0.00345
MA0104.2	MA0104.2	0.827
MA0105.1	MA0105.1	0.00163
MA0106.1	MA0106.1	0.239
MA0107.1	MA0107.1	0.0525
MA0108.2	MA0108.2	0.0013
MA0111.1	MA0111.1	0.961
MA0112.2	MA0112.2	3.89883e-4
MA0113.1	MA0113.1	0.148
MA0114.1	MA0114.1	1.44287e-6
MA0115.1	MA0115.1	5.81015e-6
MA0116.1	MA0116.1	0.00789
MA0117.1	MA0117.1	0.683
MA0119.1	MA0119.1	0.0811
MA0122.1	MA0122.1	0.873
MA0124.1	MA0124.1	0.537
MA0125.1	MA0125.1	4.57794e-4
MA0131.1	MA0131.1	0.724
MA0135.1	MA0135.1	0.802
MA0136.1	MA0136.1	2.99219e-15
MA0137.2	MA0137.2	0.00322
MA0138.2	MA0138.2	0.355
MA0139.1	MA0139.1	0.0752
MA0140.1	MA0140.1	5.25301e-4
MA0141.1	MA0141.1	5.49875e-4
MA0142.1	MA0142.1	0.351
MA0143.1	MA0143.1	0.126
MA0144.1	MA0144.1	0.0117
MA0145.1	MA0145.1	0.0613
MA0146.1	MA0146.1	0.0762
MA0147.1	MA0147.1	0.593
MA0148.1	MA0148.1	2.67633e-4
MA0149.1	MA0149.1	0.0255
MA0150.1	MA0150.1	0.0411
MA0152.1	MA0152.1	0.339
MA0153.1	MA0153.1	1.92566e-25
MA0154.1	MA0154.1	0.00487
MA0155.1	MA0155.1	0.943
MA0156.1	MA0156.1	1.65215e-7
MA0157.1	MA0157.1	0.0992
MA0159.1	MA0159.1	0.00822
MA0160.1	MA0160.1	0.00448
MA0162.1	MA0162.1	0.351
MA0163.1	MA0163.1	3.44755e-4
MA0164.1	MA0164.1	0.802
MA0258.1	MA0258.1	0.0166
MA0259.1	MA0259.1	0.897

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11205

Novel motif	Logo	P-value
1	1	0.113
10	10	0.0816
100	100	0.824
101	101	0.556
102	102	0.641
103	103	0.0109
104	104	0.63
105	105	0.573
106	106	0.0756
107	107	0.21
108	108	0.906
109	109	0.0085
11	11	0.0451
110	110	0.0931
111	111	5.23853e-4
112	112	0.00289
113	113	0.92
114	114	0.0214
115	115	0.98
116	116	0.275
117	117	0.0141
118	118	0.295
119	119	0.103
12	12	0.304
120	120	0.213
121	121	0.598
122	122	0.811
123	123	0.547
124	124	0.703
125	125	0.0535
126	126	0.167
127	127	0.0612
128	128	0.126
129	129	0.311
13	13	0.00279
130	130	0.97
131	131	0.473
132	132	0.577
133	133	0.684
134	134	0.584
135	135	0.23
136	136	0.0981
137	137	0.329
138	138	0.179
139	139	0.0333
14	14	0.911
140	140	0.0927
141	141	0.0257
142	142	0.718
143	143	0.149
144	144	0.786
145	145	0.05
146	146	0.447
147	147	0.717
148	148	0.332
149	149	0.183
15	15	0.0626
150	150	0.241
151	151	0.393
152	152	0.049
153	153	0.639
154	154	0.977
155	155	0.187
156	156	0.617
157	157	0.68
158	158	0.18
159	159	0.417
160	160	0.344
161	161	0.195
162	162	0.826
163	163	0.582
164	164	0.00458
165	165	0.00809
166	166	0.705
167	167	0.711
168	168	0.762
169	169	0.00368
17	17	0.0452
18	18	0.477
19	19	0.301
2	2	0.582
20	20	0.496
21	21	0.232
22	22	0.242
23	23	0.387
24	24	0.0773
25	25	0.482
26	26	0.012
27	27	0.447
28	28	0.312
29	29	0.0437
3	3	0.0587
30	30	0.9
31	31	0.535
32	32	0.303
33	33	0.239
34	34	0.761
35	35	0.599
36	36	0.269
37	37	0.0209
38	38	0.262
39	39	0.389
4	4	0.604
40	40	0.307
41	41	0.364
42	42	0.231
43	43	0.179
44	44	0.109
45	45	0.52
46	46	0.127
47	47	0.0848
48	48	0.0826
49	49	0.162
5	5	0.132
50	50	0.696
51	51	0.582
52	52	0.353
53	53	0.866
54	54	0.685
55	55	0.466
56	56	0.312
57	57	0.647
58	58	0.211
59	59	0.033
6	6	0.608
60	60	0.0393
61	61	0.244
62	62	0.0799
63	63	0.0803
64	64	0.496
65	65	0.157
66	66	0.563
67	67	0.969
68	68	0.131
69	69	0.984
7	7	0.0674
70	70	0.00804
71	71	0.0135
72	72	0.279
73	73	0.0184
74	74	0.285
75	75	0.0241
76	76	0.59
77	77	0.166
78	78	0.0313
79	79	0.0908
8	8	0.0362
80	80	0.332
81	81	0.27
82	82	0.00952
83	83	0.51
84	84	0.168
85	85	0.0466
86	86	0.117
87	87	0.178
88	88	0.466
89	89	0.0824
9	9	0.613
90	90	0.0875
91	91	0.741
92	92	0.063
93	93	0.238
94	94	0.311
95	95	0.0213
96	96	0.451
97	97	0.923
98	98	0.372
99	99	0.504

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11205

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011281 mouse eyeball- neonate N02 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0004456 (entire sense organ system)
0001456 (face)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000307 (mouse neonate N2 sample)
0011281 (mouse eyeball- neonate N02 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:79296783..79296801,-!p1@Neurod1!2.68!482.19!Neurod1;;chr19:19185671..19185693,-!p1@Rorb!2.57!850.72!Rorb;;chr7:16465229..16465249,-!p1@Crx!2.56!362.16!Crx;;chr10:129717274..129717298,-!p1@Neurod4!2.50!314.93!Neurod4;;chr18:66098702..66098742,-!p1@Rax!2.27!184.03!Rax;;chr14:49287186..49287225,-!p1@Otx2!2.26!181.88!Otx2;;chr9:59797875..59797929,-!p1@Nr2e3!2.19!153.95!Nr2e3;;chr14:49284773..49284790,-!p2@Otx2!2.12!130.34!Otx2;;chr10:86956396..86956411,-!p1@Ascl1!2.02!157.23!Ascl1;;chr4:154335024..154335039,+!p1@Hes5!2.01!122.75!Hes5;;chr10:76285563..76285576,-!p2@Pcbp3!2.00!99.98!Pcbp3;;chr2:105509045..105509071,+!p1@Pax6!1.91!80.68!Pax6;;chr17:86020115..86020128,+!p2@Six3!1.78!58.75!Six3;;chr1:19199236..19199258,+!p1@Tfap2b!1.77!57.44!Tfap2b;;chr2:105522662..105522687,+!p2@Pax6!1.75!55.57!Pax6;;chr2:38206744..38206766,+!p1@Lhx2!1.74!64.00!Lhx2;;chr3:127336052..127336058,+!p1@Neurog2!1.73!52.57!Neurog2;;chr10:129717308..129717319,-!p2@Neurod4!1.71!50.13!Neurod4;;chr17:86020156..86020183,+!p1@Six3!1.69!47.98!Six3;;chr2:146047829..146047847,+!p1@Insm1!1.67!80.49!Insm1;;chr14:56143046..56143060,-!p1@Nrl!1.65!43.95!Nrl;;chr3:101814061..101814094,+!p1@Nhlh2!1.65!43.85!Nhlh2;;chr2:38206580..38206600,+!p2@Lhx2!1.60!47.88!Lhx2;;chr12:85910771..85910785,+!p1@Vsx2!1.56!35.61!Vsx2;;chr12:74040861..74040875,+!p1@Six6!1.56!35.61!Six6;;chr14:49282415..49282426,-!p4@Otx2!1.55!34.11!Otx2;;chr4:150503457..150503498,-!p3@Camta1!1.52!35.89!Camta1;;chr3:34548909..34548927,+!p1@Sox2!1.46!46.85!Sox2;;chr13:40829137..40829205,-!p1@Tfap2a!1.45!30.83!Tfap2a;;chr14:49287107..49287125,-!p3@Otx2!1.45!27.27!Otx2;;chr17:86020510..86020589,+!p3@Six3!1.45!26.89!Six3;;chr12:56700411..56700416,+!p@chr12:56700411..56700416,+!1.43!25.77!Insm2;;chr17:25707623..25707639,-!p1@Sox8!1.42!105.04!Sox8;;chr5:35731493..35731531,+!p1@Hmx1!1.42!25.30!Hmx1;;chr19:19185697..19185711,-!p2@Rorb!1.39!30.17!Rorb;;chr14:56143775..56143804,-!p2@Nrl!1.36!22.11!Nrl;;chr12:74040895..74040916,+!p2@Six6!1.36!21.74!Six6;;chr10:44178375..44178390,-!p2@Prdm1!1.34!28.02!Prdm1;;chr1:9690398..9690410,-!p2@Mybl1!1.33!24.36!Mybl1;;chr6:83661226..83661282,+!p1@Vax2!1.33!20.52!Vax2;;chr4:21612929..21612952,-!p1@Prdm13!1.33!20.15!Prdm13;;chr5:98609885..98609900,+!p1@Prdm8!1.31!19.58!Prdm8;;chr2:151907546..151907561,+!p1@Scrt2!1.31!19.40!Scrt2;;chr13:40826150..40826167,-!p3@Tfap2a!1.30!21.08!Tfap2a;;chr4:97248607..97248649,+!p15@Nfia!1.29!18.46!Nfia;;chr9:59797847..59797858,-!p5@Nr2e3!1.29!18.46!Nr2e3;;chr10:44178521..44178557,-!p1@Prdm1!1.28!31.86!Prdm1;;chr17:86012772..86012825,+!p4@Six3!1.28!18.08!Six3;;chr1:19199119..19199134,+!p4@Tfap2b!1.28!17.99!Tfap2b;;chr15:103164702..103164778,-!p3@Zfp385a!1.27!20.80!Zfp385a;;chr19:19075589..19075609,-!p4@Rorb!1.27!17.71!Rorb;;chr10:42303385..42303401,-!p1@Nr2e1!1.26!17.24!Nr2e1;;chr13:40825465..40825469,-!p2@Tfap2a!1.26!17.05!Tfap2a;;chr10:20880731..20880775,-!p2@Myb!1.25!34.48!Myb;;chr1:19199095..19199114,+!p5@Tfap2b!1.25!16.59!Tfap2b;;chrX:58146612..58146615,-!p1@Sox3!1.23!16.12!Sox3;;chr1:19199151..19199170,+!p3@Tfap2b!1.23!16.02!Tfap2b;;chr2:163028808..163028869,+!p1@Tox2!1.22!54.63!Tox2;;chr10:44178474..44178487,-!p4@Prdm1!1.21!22.11!Prdm1;;chr1:140739014..140739032,-!p1@Lhx9!1.19!18.55!Lhx9;;chr5:106887474..106887489,-!p1@Barhl2!1.19!14.43!Barhl2;;chr17:48015645..48015689,-!p9@Foxp4!1.17!17.99!Foxp4;;chr1:189821714..189821761,+!p1@Esrrg!1.16!25.21!Esrrg;;chr18:66098673..66098684,-!p2@Rax!1.16!13.49!Rax;;chr16:91225808..91225824,+!p1@Olig2!1.16!13.31!Olig2;;chr14:104867201..104867258,-!p1@Pou4f1!1.15!18.55!Pou4f1;;chr10:44178493..44178520,-!p3@Prdm1!1.15!18.27!Prdm1;;chr4:148178559..148178603,+!p1@Casz1!1.14!36.64!Casz1;;chr1:19199079..19199092,+!p7@Tfap2b!1.14!12.93!Tfap2b;;chr17:86020137..86020149,+!p5@Six3!1.14!12.84!Six3;;chr4:82351566..82351607,-!p10@Nfib!1.14!12.74!Nfib;;chr14:34791937..34791977,-!p1@Zfp488!1.13!12.46!Zfp488;;chr14:122874619..122874634,+!p1@Zic2!1.12!12.09!Zic2;;chr2:19367259..19367278,+!p1@Ptf1a!1.12!12.09!Ptf1a;;chr7:38554763..38554780,-!p1@Zfp536!1.11!21.74!Zfp536;;chr4:82351527..82351541,-!p16@Nfib!1.09!11.34!Nfib;;chr11:85646263..85646278,+!p2@Tbx2!1.07!27.83!Tbx2;;chr11:85646303..85646329,+!p1@Tbx2!1.06!69.81!Tbx2;;chr4:82351544..82351563,-!p15@Nfib!1.06!10.59!Nfib;;chr2:65683890..65683907,+!p1@Csrnp3!1.05!19.68!Csrnp3;;chr4:114598669..114598674,-!p1@Foxe3!1.05!10.12!Foxe3;;chr10:44178575..44178590,-!p5@Prdm1!1.04!12.46!Prdm1;;chr10:20880629..20880683,-!p1@Myb!1.03!28.58!Myb;;chr4:126413480..126413489,-!p1@Tfap2e!1.03!9.84!Tfap2e;;chr2:81893535..81893548,+!p1@Zfp804a!1.03!9.84!Zfp804a;;chr10:62562530..62562540,+!p1@Atoh7!1.03!9.65!Atoh7;;chr10:20880698..20880717,-!p3@Myb!1.02!14.90!Myb;;chr1:179374784..179374800,+!p2@Zfp238!1.02!11.24!Zfp238;;chr1:9690424..9690467,-!p1@Mybl1!1.01!19.30!Mybl1;;chr8:12395603..12395621,+!p1@Sox1!1.01!9.28!Sox1;;chr11:98190918..98190951,-!p1@Neurod2!1.01!9.18!Neurod2;;chr2:77654815..77654872,-!p2@Zfp385b!0.99!11.06!Zfp385b;;chr9:91260594..91260612,-!p1@Zic1!0.99!8.81!Zic1;;chr13:83643159..83643226,+!p3@Mef2c!0.99!8.81!Mef2c;;chr1:19202352..19202354,+!p2@Tfap2b!0.99!8.81!Tfap2b;;chr9:106356211..106356242,+!p1@Pcbp4!0.98!171.94!Pcbp4;;chr4:150482563..150482655,-!p2@Camta1!0.98!31.11!Camta1;;chr9:91260616..91260653,-!p2@Zic1!0.98!8.62!Zic1;;chr19:7342725..7342784,+!p1@Rcor2!0.97!34.86!Rcor2;;chr1:19199221..19199234,+!p6@Tfap2b!0.97!8.43!Tfap2b;;chr2:105515586..105515606,+!p4@Pax6!0.96!8.15!Pax6;;chr9:55388997..55389016,+!p1@Isl2!0.96!8.15!Isl2;;chr8:94881872..94881887,+!p2@Irx5!0.95!8.62!Irx5;;chr4:6917921..6917970,-!p2@Tox!0.94!22.11!Tox;;chr10:42303452..42303470,-!p2@Nr2e1!0.94!7.78!Nr2e1;;chr2:105515793..105515808,+!p3@Pax6!0.94!7.78!Pax6;;chr13:40829337..40829360,-!p5@Tfap2a!0.94!7.78!Tfap2a;;chr2:181501988..181502026,+!p3@Myt1!0.94!7.68!Myt1;;chr18:55149735..55149776,-!p4@Zfp608!0.92!18.37!Zfp608;;chr3:128916868..128916890,+!p1@Pitx2!0.92!10.31!Pitx2;;chr2:79296907..79296918,-!p2@Neurod1!0.92!7.40!Neurod1;;chr2:103143336..103143367,-!p1@Ehf!0.91!11.90!Ehf;;chr8:107793737..107793757,+!p2@Hsf4!0.91!8.25!Hsf4;;chr14:56143753..56143767,-!p3@Nrl!0.91!7.22!Nrl;;chr12:30219426..30219506,+!p2@Myt1l!0.91!7.22!Myt1l;;chr3:95032091..95032183,-!p1@Mllt11!0.90!61.75!Mllt11;;chr12:28027561..28027591,-!p1@Sox11!0.90!47.98!Sox11;;chr19:7342786..7342803,+!p2@Rcor2!0.90!9.46!Rcor2;;chr7:38557752..38557793,-!p3@Zfp536!0.90!8.34!Zfp536;;chr15:76352832..76352900,-!p1@Scrt1!0.90!7.03!Scrt1;;chr1:19199064..19199075,+!p10@Tfap2b!0.90!7.03!Tfap2b;;chr2:181501745..181501778,+!p1@Myt1!0.90!7.03!Myt1;;chr4:97248473..97248496,+!p16@Nfia!0.90!7.03!Nfia;;chr14:98568971..98569025,-!p1@Dach1!0.89!54.53!Dach1;;chr14:98568761..98568814,-!p2@Dach1!0.89!48.54!Dach1;;chr1:157589131..157589176,-!p1@Lhx4!0.89!6.84!Lhx4;;chr9:74709695..74709722,+!p1@Onecut1!0.89!6.75!Onecut1;;chr7:116154364..116154444,+!p1@Tub!0.88!11.53!Tub;;chr13:99124189..99124205,+!p1@Foxd1!0.88!10.21!Foxd1;;chr3:34548946..34548972,+!p2@Sox2!0.88!7.31!Sox2;;chr4:97248652..97248671,+!p19@Nfia!0.88!6.56!Nfia;;chr17:86020186..86020195,+!p9@Six3!0.88!6.56!Six3;;chr1:93309740..93309811,-!p1@Hes6!0.86!132.96!Hes6;;chr7:130644017..130644092,-!p1@Zkscan2!0.86!12.46!Zkscan2;;chr2:181498020..181498040,+!p5@Myt1!0.86!6.28!Myt1;;chr17:86020468..86020504,+!p6@Six3!0.86!6.18!Six3;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.85!15.74!Hmga1;;chr3:99057269..99057306,+!p1@Tbx15!0.85!7.59!Tbx15;;chr7:38558544..38558566,-!p4@Zfp536!0.85!7.03!Zfp536;;chr10:106931775..106931798,-!p1@Myf6!0.85!6.09!Myf6;;chr4:153708892..153708904,-!p13@Prdm16!0.85!6.09!Prdm16;;chr4:41678256..41678295,-!p1@Arid3c!0.85!6.09!Arid3c;;chr14:98569030..98569059,-!p3@Dach1!0.84!30.45!Dach1;;chr9:106356243..106356264,+!p2@Pcbp4!0.84!27.27!Pcbp4;;chr18:64499706..64499721,+!p2@Onecut2!0.84!8.62!Onecut2;;chr2:151906844..151906873,+!p3@Scrt2!0.84!5.90!Scrt2;;chr8:24780125..24780143,+!p1@Zmat4!0.83!8.53!Zmat4;;chr2:172375081..172375105,+!p1@Tfap2c!0.83!5.81!Tfap2c;;chr1:19199193..19199207,+!p11@Tfap2b!0.83!5.81!Tfap2b;;chr18:65741935..65741964,+!p2@Zfp532!0.82!16.49!Zfp532;;chr13:117099847..117099907,-!p1@Isl1!0.82!10.78!Isl1;;chr11:101755669..101755686,-!p1@Meox1!0.82!10.49!Meox1;;chr7:38558574..38558611,-!p2@Zfp536!0.81!6.93!Zfp536;;chr2:181501710..181501742,+!p2@Myt1!0.81!5.53!Myt1;;chr10:42303410..42303422,-!p3@Nr2e1!0.81!5.43!Nr2e1;;chr15:76353005..76353021,-!p2@Scrt1!0.81!5.43!Scrt1;;chr2:115891534..115891589,-!p1@Meis2!0.80!82.08!Meis2;;chr1:191994550..191994623,-!p1@Prox1!0.80!39.82!Prox1;;chr8:94881733..94881790,+!p1@Irx5!0.80!10.96!Irx5;;chr11:85646341..85646352,+!p3@Tbx2!0.80!10.96!Tbx2;;chr7:38554745..38554756,-!p7@Zfp536!0.80!5.34!Zfp536;;chr5:106887496..106887515,-!p2@Barhl2!0.80!5.34!Barhl2;;chr10:12810631..12810649,+!p1@Plagl1!0.79!148.14!Plagl1;;chr12:12948633..12948651,-!p1@Mycn!0.79!54.35!Mycn;;chr4:148178529..148178548,+!p3@Casz1!0.79!13.02!Casz1;;chr9:31720843..31720888,-!p1@Barx2!0.79!5.81!Barx2;;chr11:21901608..21901634,-!p1@Otx1!0.79!5.15!Otx1;;chr4:122673187..122673201,+!p2@Mycl1!0.78!9.46!Mycl1;;chr11:98789140..98789168,+!p5@Rara!0.78!8.43!Rara;;chr2:17976799..17976829,+!p5@Mllt10!0.78!6.28!Mllt10;;chr17:48015839..48015915,-!p3@Foxp4!0.78!6.00!Foxp4;;chr7:38557887..38557910,-!p5@Zfp536!0.78!5.06!Zfp536;;chr9:118387300..118387317,+!p1@Eomes!0.78!5.06!Eomes;;chr1:19202185..19202187,+!p9@Tfap2b!0.78!4.97!Tfap2b;;chr13:40826119..40826131,-!p7@Tfap2a!0.78!4.97!Tfap2a;;chr4:13670499..13670526,+!p2@Runx1t1!0.77!11.43!Runx1t1;;chr13:72766250..72766273,+!p1@Irx2!0.77!7.87!Irx2;;chr17:86020336..86020352,+!p8@Six3!0.77!4.87!Six3;;chr2:105509100..105509107,+!p6@Pax6!0.77!4.87!Pax6;;chr15:75447162..75447217,+!p2@Zfp41!0.76!15.27!Zfp41;;chr18:66098752..66098757,-!p3@Rax!0.76!4.78!Rax;;chr19:46222859..46222876,-!p1@Pitx3!0.76!4.78!Pitx3;;chr6:70906450..70906454,+!p1@Foxi3!0.76!4.78!Foxi3;;chr5:114724042..114724090,-!p2@Foxn4!0.76!4.78!Foxn4;;chr9:96159147..96159204,+!p2@Tfdp2!0.75!9.18!Tfdp2;;chr9:106356278..106356292,+!p3@Pcbp4!0.75!8.43!Pcbp4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72631..25372684,-!p1@Zfp575!0.27!4.40!Zfp575;;chr17:22362583..22362606,-!p1@Gm4944!0.27!4.31!Gm4944;;chr18:35721916..35721927,+!p3@Matr3!0.27!3.94!Matr3;;chr12:75009172..75009223,+!p3@Hif1a!0.27!3.37!Hif1a;;chr6:134780163..134780197,+!p2@Crebl2!0.27!3.19!Crebl2;;chr9:72122680..72122693,+!p2@Zfp280d!0.27!3.00!Zfp280d;;chr4:54960387..54960415,+!p4@Zfp462!0.27!2.81!Zfp462;;chr7:87171256..87171280,+!p4@Zfp710!0.27!2.53!Zfp710;;chr5:22940353..22940372,+!p3@Mll5!0.27!2.44!Mll5;;chr7:25862363..25862382,+!p2@Zfp574!0.27!2.25!Zfp574;;chr10:127896265..127896276,+!p4@Smarcc2!0.27!2.16!Smarcc2;;chr15:100382267..100382287,-!p3@Tfcp2!0.27!1.97!Tfcp2;;chr17:46520492..46520515,+!p4@Zfp318!0.27!1.59!Zfp318;;chr7:25292310..25292329,+!p5@Zfp428!0.27!1.59!Zfp428;;chr10:30562617..30562637,-!p2@Hey2!0.27!1.31!Hey2;;chr15:40486854..40486867,+!p7@Zfpm2!0.27!1.22!Zfpm2;;chr6:14851547..14851571,+!p7@Foxp2!0.27!1.22!Foxp2;;chr7:52472041..52472065,+!p2@Tead2!0.27!1.12!Tead2;;chr7:144506051..144506062,-!p5@Ebf3!0.27!0.84!Ebf3;;chr10:106931839..106931851,-!p3@Myf6!0.27!0.84!Myf6;;chr10:119913954..119913972,-!p8@Hmga2!0.27!0.84!Hmga2;;chr1:169528457..169528482,+!p3@Rxrg!0.27!0.84!Rxrg;;chr1:169528433..169528456,+!p10@Rxrg!0.27!0.84!Rxrg;;chr2:38194778..38194798,+!p3@Lhx2!0.27!0.84!Lhx2;;chr1:91827728..91827743,-!p2@Gbx2!0.27!0.84!Gbx2;;chr2:65768149..65768173,+!p4@Csrnp3!0.27!0.84!Csrnp3;;chr1:179374862..179374873,+!p6@Zfp238!0.27!0.84!Zfp238;;chr2:151907604..151907629,+!p4@Scrt2!0.27!0.84!Scrt2;;chr2:105515863..105515873,+!p8@Pax6!0.27!0.84!Pax6;;chr4:150482353..150482386,-!p6@Camta1!0.27!0.84!Camta1;;chr2:81893447..81893468,+!p2@Zfp804a!0.27!0.84!Zfp804a;;chr15:75578748..75578752,-!p1@Mafa!0.27!0.84!Mafa;;chr14:122874718..122874729,+!p3@Zic2!0.27!0.84!Zic2;;chr12:28027256..28027282,-!p2@Sox11!0.27!0.84!Sox11;;chr12:30213392..30213414,+!p8@Myt1l!0.27!0.84!Myt1l;;chr12:30220046..30220070,+!p6@Myt1l!0.27!0.84!Myt1l;;chr12:37835248..37835260,+!p4@Meox2!0.27!0.84!Meox2;;chr19:46222739..46222745,-!p2@Pitx3!0.27!0.84!Pitx3;;chr17:86020357..86020366,+!p11@Six3!0.27!0.84!Six3;;chrX:34442842..34442866,-!p3@Nkrf!0.27!0.84!Nkrf;;chr3:30993974..30994045,+!p1@Skil!0.26!45.26!Skil;;chr15:81575569..81575599,+!p2@Zc3h7b!0.26!17.52!Zc3h7b;;chr7:28516417..28516460,+!p1@Zfp60!0.26!13.59!Zfp60;;chr1:170362040..170362113,-!p2@Pbx1!0.26!12.27!Pbx1;;chr7:134170660..134170711,-!p6@Maz!0.26!8.71!Maz;;chr2:119698241..119698291,+!p2@Mga!0.26!7.50!Mga;;chr16:42875952..42875974,+!p4@Zbtb20!0.26!5.53!Zbtb20;;chr19:8876976..8877011,+!p1@Zbtb3!0.26!4.78!Zbtb3;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.26!3.19!Zbtb11;;chr4:154010409..154010466,-!p2@Prdm16!0.26!3.09!Prdm16;;chr5:145962744..145962760,-!p2@Zkscan14!0.26!2.62!Zkscan14;;chr7:148513574..148513593,-!p5@Deaf1!0.26!2.53!Deaf1;;chr11:5761979..5761992,+!p2@Aebp1!0.26!2.53!Aebp1;;chr17:4994491..4994531,+!p6@Arid1b!0.26!2.53!Arid1b;;chr19:28085997..28086028,-!p7@Rfx3!0.26!2.25!Rfx3;;chr4:133309830..133309841,-!p10@Arid1a!0.26!2.06!Arid1a;;chr11:121380594..121380609,-!p2@Zfp750!0.26!2.06!Zfp750;;chr7:28516464..28516475,+!p3@Zfp60!0.26!1.69!Zfp60;;chr6:83391668..83391678,-!p3@Tet3!0.26!1.69!Tet3;;chr6:53523346..53523353,+!p3@Creb5!0.26!1.50!Creb5;;chr13:37870253..37870272,+!p13@Rreb1!0.26!1.50!Rreb1;;chr1:64168228..64168250,-!p7@Klf7!0.26!1.41!Klf7;;chr3:133207369..133207376,-!p3@Tet2!0.26!1.31!Tet2;;chr4:32325955..32325971,+!p3@Bach2!0.26!1.31!Bach2;;chr3:95032184..95032195,-!p4@Mllt11!0.26!1.22!Mllt11;;chr3:95032213..95032226,-!p6@Mllt11!0.26!1.12!Mllt11;;chr10:127896295..127896304,+!p6@Smarcc2!0.26!1.12!Smarcc2;;chr9:110034519..110034606,+!p1@Smarcc1!0.25!69.90!Smarcc1;;chr19:53384985..53385042,+!p1@Mxi1!0.25!49.94!Mxi1;;chr18:24113169..24113205,+!p1@Zfp397!0.25!42.07!Zfp397;;chr7:117205217..117205246,+!p1@Zfp143!0.25!30.64!Zfp143;;chr15:102034070..102034124,+!p1@Zfp740!0.25!26.42!Zfp740;;chr13:44826722..44826742,+!p1@Jarid2!0.25!25.49!Jarid2;;chr1:33871252..33871313,-!p2@Zfp451!0.25!18.74!Zfp451;;chr9:36954842..36954908,-!p1@Pknox2!0.25!17.99!Pknox2;;chr10:126726055..126726091,-!p2@Mbd6!0.25!12.46!Mbd6;;chr7:17200422..17200487,-!p3@Grlf1!0.25!9.74!Grlf1;;chr8:97856080..97856150,-!p2@Zfp319!0.25!8.71!Zfp319;;chr6:118405493..118405536,-!p1@Zfp248!0.25!5.34!Zfp248;;chr7:105851808..105851822,+!p3@Prkrir!0.25!4.97!Prkrir;;chr2:119698528..119698571,+!p3@Mga!0.25!4.97!Mga;;chr7:30638630..30638702,-!p1@Zfp940!0.25!4.69!Zfp940;;chr16:4214034..4214070,-!p@chr16:4214034..4214070,-!0.25!4.22!Crebbp;;chr15:76755836..76755867,-!p1@Zfp647!0.25!3.94!Zfp647;;chr4:13670571..13670625,+!p1@Runx1t1!0.25!3.65!Runx1t1;;chr3:30500978..30501018,+!p1@Mynn!0.25!3.56!Mynn;;chr2:17986419..17986443,+!p3@Mllt10!0.25!3.56!Mllt10;;chr6:51382677..51382783,+!p1@Nfe2l3!0.25!3.37!Nfe2l3;;chr7:50817629..50817652,+!p1@LOC100505180,p1@Zfp658!0.25!3.19!Zfp658;;chr17:15701263..15701277,-!p2@Prdm9!0.25!3.09!Prdm9;;chr6:92042363..92042413,+!p3@Nr2c2!0.25!3.09!Nr2c2;;chr1:170361826..170361844,-!p9@Pbx1!0.25!2.81!Pbx1;;chr17:46520518..46520571,+!p2@Zfp318!0.25!2.72!Zfp318;;chr5:22939771..22939797,+!p4@Mll5!0.25!2.62!Mll5;;chr5:122500142..122500167,-!p2@Cux2!0.25!2.62!Cux2;;chr14:76814883..76814898,+!p9@Tsc22d1!0.25!2.44!Tsc22d1;;chr18:3337465..3337498,-!p6@Crem!0.25!2.34!Crem;;chr18:76400986..76401016,+!p5@Smad2!0.25!2.34!Smad2;;chr11:62602947..62602980,-!p2@Zfp286!0.25!2.34!Zfp286;;chr18:69839537..69839544,+!p13@Tcf4!0.25!1.97!Tcf4;;chr10:62327990..62328025,-!p2@Tet1!0.25!1.69!Tet1;;chr10:79896129..79896163,-!p6@Tcf3!0.25!1.69!Tcf3;;chr12:3806513..3806527,+!p9@Dnmt3a!0.25!1.59!Dnmt3a;;chr1:13364153..13364156,-!p5@Ncoa2!0.25!1.59!Ncoa2;;chr2:156666435..156666476,+!p4@Tgif2!0.25!1.12!Tgif2;;chr2:180377386..180377462,-!p1@Tcfl5!0.25!1.12!Tcfl5;;chr9:96159427..96159432,+!p11@Tfdp2!0.25!1.12!Tfdp2;;chr13:31898529..31898542,+!p5@Foxc1!0.25!1.12!Foxc1;;chr7:134169357..134169366,-!p18@Maz!0.25!1.12!Maz;;chr4:150513630..150513686,-!p4@Camta1!0.25!1.03!Camta1;;chr5:138558139..138558214,+!p1@Zscan21!0.24!43.01!Zscan21;;chr7:30954720..30954785,-!p1@LOC677248,p1@Zfp146!0.24!40.20!Zfp146;;chr2:84877369..84877459,+!p1@Ssrp1!0.24!32.61!Ssrp1;;chr1:136456767..136456790,+!p2@Kdm5b!0.24!32.33!Kdm5b;;chr1:136456734..136456757,+!p3@Kdm5b!0.24!19.21!Kdm5b;;chr9:121669118..121669179,+!p1@Zfp651!0.24!16.12!Zfp651;;chr3:94641350..94641380,+!p1@Pogz!0.24!15.18!Pogz;;chr17:23723181..23723236,-!p1@Zfp13!0.24!14.34!Zfp13;;chr14:31832369..31832400,+!p3@Pbrm1!0.24!12.65!Pbrm1;;chr8:81552152..81552208,+!p1@Zfp827!0.24!10.78!Zfp827;;chr5:24107779..24107825,-!p1@Smarcd3!0.24!9.84!Smarcd3;;chr1:162964925..162964963,-!p1@Zbtb37!0.24!9.56!Zbtb37;;chr15:76287876..76287894,+!p1@Scx!0.24!7.87!Scx;;chr15:100325682..100325698,-!p1@Csrnp2!0.24!6.65!Csrnp2;;chrX:45245679..45245702,-!p1@Smarca1!0.24!6.28!Smarca1;;chrX:132420525..132420558,+!p3@Bhlhb9!0.24!5.90!Bhlhb9;;chr2:44968721..44968734,-!p6@Zeb2!0.24!5.15!Zeb2;;chr12:119539902..119539931,-!p2@Sp4!0.24!5.06!Sp4;;chr15:100430414..100430470,-!p1@Pou6f1!0.24!4.12!Pou6f1;;chrX:20527723..20527739,-!p2@Elk1!0.24!3.84!Elk1;;chrX:92906980..92907024,+!p2@Zc3h12b!0.24!3.19!Zc3h12b;;chr15:76181718..76181729,+!p3@Maf1!0.24!3.09!Maf1;;chr3:90097217..90097233,+!p3@Gatad2b!0.24!3.00!Gatad2b;;chr5:34163132..34163158,+!p3@Whsc1!0.24!2.44!Whsc1;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.24!2.34!D630045J12Rik;;chr13:44826634..44826645,+!p7@Jarid2!0.24!2.25!Jarid2;;chr9:121668850..121668885,+!p2@Zfp651!0.24!2.16!Zfp651;;chrX:103124736..103124747,-!p6@Atrx!0.24!2.06!Atrx;;chr10:119913792..119913820,-!p5@Hmga2!0.24!1.87!Hmga2;;chr5:125342568..125342602,+!p2@Zfp664!0.24!1.78!Zfp664;;chr7:4947625..4947634,-!p6@Zfp579!0.24!1.78!Zfp579;;chr11:116196664..116196679,-!p1@Foxj1!0.24!1.59!Foxj1;;chr4:122911056..122911065,+!p2@Heyl!0.24!1.59!Heyl;;chr11:44431016..44431045,+!p5@Ebf1!0.24!1.41!Ebf1;;chr13:64254437..64254453,-!p4@Zfp367!0.24!1.31!Zfp367;;chr1:120950197..120950215,-!p5@Gli2!0.24!1.31!Gli2;;chr18:69753168..69753186,+!p12@Tcf4!0.24!1.31!Tcf4;;chr17:35031524..35031539,+!p4@Zbtb12!0.24!1.22!Zbtb12;;chr10:67375223..67375240,-!p4@Zfp365!0.24!0.94!Zfp365;;chr11:98826216..98826227,+!p10@Rara!0.24!0.75!Rara;;chr16:95808192..95808202,-!p2@Erg!0.24!0.75!Erg;;chr17:48015824..48015836,-!p11@Foxp4!0.24!0.75!Foxp4;;chr4:107107224..107107259,+!p2@Glis1!0.24!0.75!Glis1;;chr9:59797525..59797538,-!p2@Nr2e3!0.24!0.75!Nr2e3;;chr9:106355745..106355766,+!p7@Pcbp4!0.24!0.75!Pcbp4;;chr14:17407671..17407684,-!p7@Rarb!0.24!0.75!Rarb;;chr13:44936077..44936096,+!p9@Jarid2!0.24!0.75!Jarid2;;chr14:17408052..17408073,-!p5@Rarb!0.24!0.75!Rarb;;chr2:181501822..181501834,+!p8@Myt1!0.24!0.75!Myt1;;chr2:172376261..172376267,+!p4@Tfap2c!0.24!0.75!Tfap2c;;chr19:59245978..59245982,-!p1@Vax1!0.24!0.75!Vax1;;chr1:169619683..169619694,+!p1@Lmx1a!0.24!0.75!Lmx1a;;chr1:179372514..179372525,+!p7@Zfp238!0.24!0.75!Zfp238;;
@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs11205
-|library_id_phase_based=1:CNhs11205
+|library_id_phase_based=2:CNhs11205
 |name=eyeball, neonate N02
 |namespace=FANTOM5
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11205,LSID747,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.131713697865146,0.0293485553947582,0,0,0,0,0.253477801576497,0,0.037299153056083,0,0,0.401586219699776,0,0,0,0,0,0,0.0952401364521265,0,0,0,0,0,0,0,0,0,0,0,0,0.0131579697709253,0.491317929419206,0,0,0,0,0.074598306112166,0.126479584939619,0.128175149360281,0.0605964008823334,0.0114968112361089,0.498953624019984,0,0,0,0,0,0,0,0,0,0.0388988969149198,0,0,-0.0271066506485206,0,0,0,0,0.0388988969149198,0,0.0876557865529054,0.0388988969149198,0.074598306112166,0.090359819034015,0.109015968643056,0.0533041376918634,0.974041513457688,0.112007612814646,0,0.129962014347658,0.141638515398019,0.0766785470831839,0.0388988969149198,0,0.144385406628466,0.0596896043481859,-0.352972686093609,0.0594101077492107,0.0177064270232298,0,0,0,0.0388988969149198,0,-0.107341114909838,-0.0535391209419944,-0.106491973572289,0.0388988969149198,0,0,0,0

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FF:1551-44G8: Difference between revisions

From FANTOM5_SSTAR

Revision as of 10:44, 28 November 2014

CNhs11205

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0