FFCP PHASE1:Hg19::chr12:48152480..48152492,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=10411 | |EntrezGene=entrezgene:10411 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=16629 | |HGNC=HGNC:16629 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=O95398 | |UniProt=uniprot:O95398 | ||
|association_with_transcript=-52bp_to_ENST00000395358,ENST00000449771_5end | |association_with_transcript=-52bp_to_ENST00000395358,ENST00000449771_5end | ||
|cluster_id=chr12:48152480..48152492,- | |||
|description=CAGE_peak_8_at_RAPGEF3_5end | |description=CAGE_peak_8_at_RAPGEF3_5end | ||
|id=chr12:48152480..48152492,- | |id=chr12:48152480..48152492,- | ||
Revision as of 08:48, 24 July 2015
| Short description: | p8@RAPGEF3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_8_at_RAPGEF3_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -52bp_to_ENST00000395358, ENST00000449771_5end |
| EntrezGene: | 10411 |
| HGNC: | 16629 |
| UniProt: | O95398 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p8@RAPGEF3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| brush border epithelial cell | 2.78e-20 | 3 |
| kidney cortex tubule cell | 2.78e-20 | 3 |
| epithelial cell of proximal tubule | 2.78e-20 | 3 |
| kidney cell | 2.05e-09 | 17 |
| kidney epithelial cell | 2.05e-09 | 17 |
| kidney cortical cell | 8.70e-09 | 12 |
| renal cortical epithelial cell | 8.70e-09 | 12 |
| mucus secreting cell | 7.45e-08 | 1 |
| epithelial cell of nephron | 4.76e-07 | 15 |
Showing 1 to 9 of 9 entries
| Ontology term | p-value | n |
|---|---|---|
| renal cortex tubule | 2.78e-20 | 3 |
| region of nephron tubule | 2.78e-20 | 3 |
| proximal tubule | 2.78e-20 | 3 |
| male genital duct | 1.02e-19 | 3 |
| internal male genitalia | 1.02e-19 | 3 |
| kidney | 1.59e-18 | 26 |
| kidney mesenchyme | 1.59e-18 | 26 |
| upper urinary tract | 1.59e-18 | 26 |
| kidney rudiment | 1.59e-18 | 26 |
| kidney field | 1.59e-18 | 26 |
Showing 1 to 10 of 61 entries
| Ontology term | p-value | n |
|---|---|---|
| mucinous adenocarcinoma | 7.45e-08 | 1 |
Showing 1 to 1 of 1 entries
