FFCP PHASE1:Mm9::chr10:42580554..42580565,+: Difference between revisions
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{{FFCP|EntrezGene=268297|HGNC=|MCL_coexpression_id=40|UniProt=Q80VG1|association_with_transcript=-33bp_to_ENSMUST00000105494_5end|description=CAGE_peak_5_at_Scml4_5end|id=chr10:42580554..42580565,+|ontology_enrichment_celltype=CL:0000838!3.75e-10!12;CL:0000084!3.32e-09!11;CL:0000827!3.32e-09!11;CL:0000542!4.78e-09!13;CL:0000051!4.78e-09!13;CL:0000791!8.25e-09!9;CL:0000789!8.25e-09!9;CL:0002420!8.25e-09!9;CL:0002419!8.25e-09!9;CL:0000790!8.25e-09!9;CL:0000624!8.03e-08!8;CL:0000117!2.28e-07!23;CL:0000337!2.28e-07!23;CL:0002031!8.65e-07!25|ontology_enrichment_celltype_v019_2=CL:0000791,7.47e-22,9;CL:0000789,7.47e-22,9;CL:0002420,7.47e-22,9;CL:0002419,7.47e-22,9;CL:0000790,7.47e-22,9;CL:0002031,2.58e-21,25;CL:0000838,5.27e-21,12;CL:0000542,2.65e-19,13;CL:0000051,2.65e-19,13;CL:0000624,3.24e-18,8;CL:0000084,9.92e-18,11;CL:0000827,9.92e-18,11;CL:0000988,3.46e-16,32;CL:0002032,3.46e-16,32;CL:0000037,3.46e-16,32;CL:0000837,3.46e-16,32;CL:0000738,1.71e-14,17;CL:0002087,1.71e-14,17;CL:0000893,3.93e-11,6;CL:0002489,3.93e-11,6;CL:0000898,3.93e-11,6;CL:0000809,3.93e-11,6;CL:0000810,3.93e-11,6;CL:0000895,3.93e-11,6;CL:0000808,3.93e-11,6;CL:0000894,3.93e-11,6;CL:0000806,3.93e-11,6;CL:0000807,3.93e-11,6;CL:0000805,3.93e-11,6;CL:0002425,3.93e-11,6;CL:0002436,3.93e-11,6;CL:0002427,3.93e-11,6;CL:0002428,3.93e-11,6;CL:0002429,3.93e-11,6;CL:0002433,3.93e-11,6;CL:0002431,3.93e-11,6;CL:0002432,3.93e-11,6;CL:0000553,1.13e-10,6;CL:0000556,1.13e-10,6;CL:0002320,1.32e-10,46;CL:0000134,1.32e-10,46;CL:0000219,1.03e-08,54;CL:0000723,2.85e-08,91;CL:0000048,2.85e-08,91;CL:0000034,1.41e-07,97;CL:0000050,3.80e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!9.07e-13!29;UBERON:0002370!1.38e-11!23;UBERON:0000974!1.38e-11!23;UBERON:0004807!1.38e-11!23;UBERON:0005058!1.38e-11!23;UBERON:0003351!1.38e-11!23;UBERON:0009113!1.38e-11!23;UBERON:0003295!1.38e-11!23;UBERON:0009722!1.38e-11!23;UBERON:0005562!1.38e-11!23;UBERON:0007690!1.38e-11!23;UBERON:0002193!6.36e-11!48;UBERON:0006562!8.26e-11!24;UBERON:0003408!8.26e-11!24;UBERON:0001557!8.26e-11!24;UBERON:0001042!8.26e-11!24;UBERON:0008814!8.26e-11!24;UBERON:0009145!8.26e-11!24;UBERON:0002390!2.96e-09!45;UBERON:0003061!2.96e-09!45;UBERON:0000072!7.48e-09!27;UBERON:0000063!2.26e-07!35|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.37e-13,48;UBERON:0002405,1.37e-13,48;UBERON:0002370,1.74e-12,23;UBERON:0000974,1.74e-12,23;UBERON:0004807,1.74e-12,23;UBERON:0005058,1.74e-12,23;UBERON:0003351,1.74e-12,23;UBERON:0009113,1.74e-12,23;UBERON:0003295,1.74e-12,23;UBERON:0009722,1.74e-12,23;UBERON:0005562,1.74e-12,23;UBERON:0007690,1.74e-12,23;UBERON:0002390,1.95e-12,45;UBERON:0003061,1.95e-12,45;UBERON:0006562,6.57e-12,24;UBERON:0003408,6.57e-12,24;UBERON:0001557,6.57e-12,24;UBERON:0001042,6.57e-12,24;UBERON:0008814,6.57e-12,24;UBERON:0009145,6.57e-12,24;UBERON:0002384,1.32e-10,46;UBERON:0000072,1.96e-10,27;UBERON:0004177,1.28e-09,29;UBERON:0005057,1.28e-09,29;UBERON:0000077,9.83e-08,35;UBERON:0007811,1.76e-07,36|phase1_expression=0,0,0,0,0,0.33575854382378,0.233612640595526,15.4947988129892,1.54867594366833,2.57470978954193,0.34243593645101,0.0797721589953364,22.5984963509192,15.6482520330005,0,1.01237633694913,0,4.57420139769445,2.60517423850904,4.66828616977833,0,0.0992909512008853,0.261199789138935,0.159992422793407,0.91763712426868,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,2.85230430298152,13.7818806982155,13.779845764841,0,0,0,0.809265843438391,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0,0.270011876663381,0,0,0,0.61245399607477,0.670918297127655,0,1.10115880999389,0.127687338085188,0.153606533256243,1.05509030184155,0.914876436024097,0.52091337055676,0.279182999001381,0,0.45839474333043,0.589257170947335,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,5.95557132388495,0.29688427812965,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0.255457055208591,0.11981512450592,0,0.254140454146129,0,0,0.753926112677186,0,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162137619091711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.38992817423824,0,0,0.398282546508734,0,0,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,1.10374698521893,0.160550589987792,0.117211686592203,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0.329940245945071,0,0,0,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0.177340233642274,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0.683483523191411,0,0,0.565105371014073,0.820165366326151,0.457556346413045,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89606672376907,0,0.308132871494482,0.389762468933385,0.716106782669926,1.39076948346885,0.961563596159751,0.738447635872886,0.302899349844443,0.914481679859998,0.504130925684203,1.46186821109629,1.82802499116626,2.33753804363138,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0,0,0,0.685082519770642,0,0,0,0,0,0,0,0.512200817262403,0,0,0,0,0,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.128050304809739,0.0574354689556133,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0.249810577937946,0.233931608445408,0,0,0,0.231867835620421|short_description=p5@Scml4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:268297 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80VG1 | |||
|association_with_transcript=-33bp_to_ENSMUST00000105494_5end | |||
|cluster_id=chr10:42580554..42580565,+ | |||
|description=CAGE_peak_5_at_Scml4_5end | |||
|id=chr10:42580554..42580565,+ | |||
|ontology_enrichment_celltype=CL:0000838!3.75e-10!12;CL:0000084!3.32e-09!11;CL:0000827!3.32e-09!11;CL:0000542!4.78e-09!13;CL:0000051!4.78e-09!13;CL:0000791!8.25e-09!9;CL:0000789!8.25e-09!9;CL:0002420!8.25e-09!9;CL:0002419!8.25e-09!9;CL:0000790!8.25e-09!9;CL:0000624!8.03e-08!8;CL:0000117!2.28e-07!23;CL:0000337!2.28e-07!23;CL:0002031!8.65e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.47e-22,9;CL:0000789,7.47e-22,9;CL:0002420,7.47e-22,9;CL:0002419,7.47e-22,9;CL:0000790,7.47e-22,9;CL:0002031,2.58e-21,25;CL:0000838,5.27e-21,12;CL:0000542,2.65e-19,13;CL:0000051,2.65e-19,13;CL:0000624,3.24e-18,8;CL:0000084,9.92e-18,11;CL:0000827,9.92e-18,11;CL:0000988,3.46e-16,32;CL:0002032,3.46e-16,32;CL:0000037,3.46e-16,32;CL:0000837,3.46e-16,32;CL:0000738,1.71e-14,17;CL:0002087,1.71e-14,17;CL:0000893,3.93e-11,6;CL:0002489,3.93e-11,6;CL:0000898,3.93e-11,6;CL:0000809,3.93e-11,6;CL:0000810,3.93e-11,6;CL:0000895,3.93e-11,6;CL:0000808,3.93e-11,6;CL:0000894,3.93e-11,6;CL:0000806,3.93e-11,6;CL:0000807,3.93e-11,6;CL:0000805,3.93e-11,6;CL:0002425,3.93e-11,6;CL:0002436,3.93e-11,6;CL:0002427,3.93e-11,6;CL:0002428,3.93e-11,6;CL:0002429,3.93e-11,6;CL:0002433,3.93e-11,6;CL:0002431,3.93e-11,6;CL:0002432,3.93e-11,6;CL:0000553,1.13e-10,6;CL:0000556,1.13e-10,6;CL:0002320,1.32e-10,46;CL:0000134,1.32e-10,46;CL:0000219,1.03e-08,54;CL:0000723,2.85e-08,91;CL:0000048,2.85e-08,91;CL:0000034,1.41e-07,97;CL:0000050,3.80e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!9.07e-13!29;UBERON:0002370!1.38e-11!23;UBERON:0000974!1.38e-11!23;UBERON:0004807!1.38e-11!23;UBERON:0005058!1.38e-11!23;UBERON:0003351!1.38e-11!23;UBERON:0009113!1.38e-11!23;UBERON:0003295!1.38e-11!23;UBERON:0009722!1.38e-11!23;UBERON:0005562!1.38e-11!23;UBERON:0007690!1.38e-11!23;UBERON:0002193!6.36e-11!48;UBERON:0006562!8.26e-11!24;UBERON:0003408!8.26e-11!24;UBERON:0001557!8.26e-11!24;UBERON:0001042!8.26e-11!24;UBERON:0008814!8.26e-11!24;UBERON:0009145!8.26e-11!24;UBERON:0002390!2.96e-09!45;UBERON:0003061!2.96e-09!45;UBERON:0000072!7.48e-09!27;UBERON:0000063!2.26e-07!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.37e-13,48;UBERON:0002405,1.37e-13,48;UBERON:0002370,1.74e-12,23;UBERON:0000974,1.74e-12,23;UBERON:0004807,1.74e-12,23;UBERON:0005058,1.74e-12,23;UBERON:0003351,1.74e-12,23;UBERON:0009113,1.74e-12,23;UBERON:0003295,1.74e-12,23;UBERON:0009722,1.74e-12,23;UBERON:0005562,1.74e-12,23;UBERON:0007690,1.74e-12,23;UBERON:0002390,1.95e-12,45;UBERON:0003061,1.95e-12,45;UBERON:0006562,6.57e-12,24;UBERON:0003408,6.57e-12,24;UBERON:0001557,6.57e-12,24;UBERON:0001042,6.57e-12,24;UBERON:0008814,6.57e-12,24;UBERON:0009145,6.57e-12,24;UBERON:0002384,1.32e-10,46;UBERON:0000072,1.96e-10,27;UBERON:0004177,1.28e-09,29;UBERON:0005057,1.28e-09,29;UBERON:0000077,9.83e-08,35;UBERON:0007811,1.76e-07,36 | |||
|phase1_expression=0,0,0,0,0,0.33575854382378,0.233612640595526,15.4947988129892,1.54867594366833,2.57470978954193,0.34243593645101,0.0797721589953364,22.5984963509192,15.6482520330005,0,1.01237633694913,0,4.57420139769445,2.60517423850904,4.66828616977833,0,0.0992909512008853,0.261199789138935,0.159992422793407,0.91763712426868,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,2.85230430298152,13.7818806982155,13.779845764841,0,0,0,0.809265843438391,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0,0.270011876663381,0,0,0,0.61245399607477,0.670918297127655,0,1.10115880999389,0.127687338085188,0.153606533256243,1.05509030184155,0.914876436024097,0.52091337055676,0.279182999001381,0,0.45839474333043,0.589257170947335,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,5.95557132388495,0.29688427812965,0,0,0,0,0.23517741427141,0,0,0.144599356919912,0,0,0,0.484875253135222,0,0,0,0.255457055208591,0.11981512450592,0,0.254140454146129,0,0,0.753926112677186,0,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162137619091711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.38992817423824,0,0,0.398282546508734,0,0,0,0,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,1.10374698521893,0.160550589987792,0.117211686592203,0,0.252470927204373,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0.329940245945071,0,0,0,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0.177340233642274,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0.683483523191411,0,0,0.565105371014073,0.820165366326151,0.457556346413045,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89606672376907,0,0.308132871494482,0.389762468933385,0.716106782669926,1.39076948346885,0.961563596159751,0.738447635872886,0.302899349844443,0.914481679859998,0.504130925684203,1.46186821109629,1.82802499116626,2.33753804363138,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0,0,0,0.685082519770642,0,0,0,0,0,0,0,0.512200817262403,0,0,0,0,0,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.128050304809739,0.0574354689556133,0,0,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0.249810577937946,0.233931608445408,0,0,0,0.231867835620421 | |||
|short_description=p5@Scml4 | |||
}} |
Revision as of 09:36, 4 August 2015
Short description: | p5@Scml4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Scml4_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | -33bp_to_ENSMUST00000105494_5end |
EntrezGene: | 268297 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.37e-13 | 48 |
immune system | 1.37e-13 | 48 |
thymus | 1.74e-12 | 23 |
neck | 1.74e-12 | 23 |
respiratory system epithelium | 1.74e-12 | 23 |
hemolymphoid system gland | 1.74e-12 | 23 |
pharyngeal epithelium | 1.74e-12 | 23 |
thymic region | 1.74e-12 | 23 |
pharyngeal gland | 1.74e-12 | 23 |
entire pharyngeal arch endoderm | 1.74e-12 | 23 |
thymus primordium | 1.74e-12 | 23 |
early pharyngeal endoderm | 1.74e-12 | 23 |
hematopoietic system | 1.95e-12 | 45 |
blood island | 1.95e-12 | 45 |
pharynx | 6.57e-12 | 24 |
gland of gut | 6.57e-12 | 24 |
upper respiratory tract | 6.57e-12 | 24 |
chordate pharynx | 6.57e-12 | 24 |
pharyngeal arch system | 6.57e-12 | 24 |
pharyngeal region of foregut | 6.57e-12 | 24 |
connective tissue | 1.32e-10 | 46 |
segment of respiratory tract | 1.96e-10 | 27 |
hemopoietic organ | 1.28e-09 | 29 |
immune organ | 1.28e-09 | 29 |
mixed endoderm/mesoderm-derived structure | 9.83e-08 | 35 |
craniocervical region | 1.76e-07 | 36 |