FFCP PHASE1:Mm9::chr7:31936446..31936467,-: Difference between revisions
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{{FFCP|EntrezGene=52857|HGNC=|MCL_coexpression_id=7|UniProt=Q8VEF1,F8WJ74|association_with_transcript=-377bp_to_ENSMUST00000001280,ENSMUST00000085636,NM_027898,uc009gif.1,uc009gig.1_5end|description=CAGE_peak_3_at_Gramd1a_5end|id=chr7:31936446..31936467,-|ontology_enrichment_celltype=CL:0000838!1.40e-09!12;CL:0000084!2.82e-09!11;CL:0000827!2.82e-09!11;CL:0000542!2.52e-08!13;CL:0000051!2.52e-08!13;CL:0000791!6.29e-08!9;CL:0000789!6.29e-08!9;CL:0002420!6.29e-08!9;CL:0002419!6.29e-08!9;CL:0000790!6.29e-08!9;CL:0000624!2.48e-07!8;CL:0000738!6.70e-07!17;CL:0002087!6.70e-07!17|ontology_enrichment_celltype_v019_2=CL:0000084,6.42e-36,11;CL:0000827,6.42e-36,11;CL:0000838,9.28e-33,12;CL:0000542,4.39e-30,13;CL:0000051,4.39e-30,13;CL:0000791,6.72e-30,9;CL:0000789,6.72e-30,9;CL:0002420,6.72e-30,9;CL:0002419,6.72e-30,9;CL:0000790,6.72e-30,9;CL:0000624,3.00e-27,8;CL:0000738,1.58e-22,17;CL:0002087,1.58e-22,17;CL:0000893,6.62e-21,6;CL:0002489,6.62e-21,6;CL:0000898,6.62e-21,6;CL:0000809,6.62e-21,6;CL:0000810,6.62e-21,6;CL:0000895,6.62e-21,6;CL:0000808,6.62e-21,6;CL:0000894,6.62e-21,6;CL:0000806,6.62e-21,6;CL:0000807,6.62e-21,6;CL:0000805,6.62e-21,6;CL:0002425,6.62e-21,6;CL:0002436,6.62e-21,6;CL:0002427,6.62e-21,6;CL:0002428,6.62e-21,6;CL:0002429,6.62e-21,6;CL:0002433,6.62e-21,6;CL:0002431,6.62e-21,6;CL:0002432,6.62e-21,6;CL:0002031,1.16e-14,25;CL:0000034,3.03e-11,97;CL:0000988,5.26e-11,32;CL:0002032,5.26e-11,32;CL:0000037,5.26e-11,32;CL:0000837,5.26e-11,32;CL:0002613,3.14e-10,3;CL:0000723,1.75e-08,91;CL:0000048,1.75e-08,91;CL:0002320,4.86e-07,46;CL:0000134,4.86e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!6.72e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.19e-16,5;UBERON:0002435,2.19e-16,5;UBERON:0000204,2.19e-16,5;UBERON:0010082,2.19e-16,5;UBERON:0002370,8.79e-11,23;UBERON:0000974,8.79e-11,23;UBERON:0004807,8.79e-11,23;UBERON:0005058,8.79e-11,23;UBERON:0003351,8.79e-11,23;UBERON:0009113,8.79e-11,23;UBERON:0003295,8.79e-11,23;UBERON:0009722,8.79e-11,23;UBERON:0005562,8.79e-11,23;UBERON:0007690,8.79e-11,23;UBERON:0006562,2.86e-10,24;UBERON:0003408,2.86e-10,24;UBERON:0001557,2.86e-10,24;UBERON:0001042,2.86e-10,24;UBERON:0008814,2.86e-10,24;UBERON:0009145,2.86e-10,24;UBERON:0002420,3.67e-10,8;UBERON:0007245,3.67e-10,8;UBERON:0010009,3.67e-10,8;UBERON:0010011,3.67e-10,8;UBERON:0000454,3.67e-10,8;UBERON:0000072,5.83e-09,27;UBERON:0004177,3.08e-08,29;UBERON:0005057,3.08e-08,29;UBERON:0002384,4.86e-07,46|phase1_expression=0,0,0,0,0,0,0,2.06597317506522,6.47628121897667,7.95819389494778,1.36974374580404,2.39316476986009,1.19840510951844,2.27293046289393,0,0,0,0.157731082679119,0,0.42438965179803,0.255129870453209,1.19149141441062,1.56719873483361,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0.418531630736908,0,0,2.35292595212406,0.683045484958446,0.485510353031154,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0.439372365468944,0.194429899074283,0.419959264876088,0,0.503347818173209,1.45072428402269,1.00828139742739,0,0,0,0.809265843438391,0.528990979272033,1.90149421051854,0,0,0,0,0,0.299600110518405,0,0.622137673850866,1.21505344498522,0.210324961351382,0.856952953211411,0,0.61245399607477,0.862609239164127,1.83843757322004,0,0.255374676170375,0,1.31886287730194,1.00636407962651,1.56274011167028,0,0.56276261003168,0.15279824777681,1.17851434189467,0.284743361598206,0.745597783301202,0,0.151143120213571,0.869593466105033,0,0,0,0,0,0.140444420131752,0.340860645156116,0.519572009205738,0,0,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0.173485326766136,0,0.461230994512117,0.150722640552623,0.23517741427141,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0.209446706813455,0.255457055208591,0.479260498023681,0,0.889491589511453,0.149790639404823,1.37250180845588,1.88481528169297,0.347648640384553,0,0.83115217823824,0,0.101839363850316,0.248813941220186,0,0,0.130120442962704,0.229902104433473,0.180062129805349,0.150704817835715,0.204109497453984,0.2562274405697,0.468508622798644,0,0.215567992932842,0.567318240503458,0.879755620819744,0,0.556094498451196,0,0.61734640922383,0.59710280045548,0,0.51469581422943,0.568326998791185,0,0.234526059981096,0,0.23674473558521,0,0.154267112887378,0.465067889500816,0,0,0,0.164167464079095,0.0810688095458557,0.146199987425332,0.439100230582101,0.134206418760372,0.210289948564127,0.308713837137853,0,0,0,0.464473343720877,0.128867461322093,0.403367049246685,0,0.190225626112559,0,0.164698954724011,0,0,0,0,0,0,0,0.228497025219458,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0,0.470996183524124,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0.238043640886014,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0.172684981865896,0.289298117163023,0,0.54390568381871,0,0,0.481651769963376,0,0,0,0.315508219416257,0,0.861693590931196,0,0.445597348164788,0.566153061577665,0.404810701674894,0,0.395287777946524,0.321321316421807,0.141940085208269,0,0,0.164970122972535,0,0.485561272309963,0.302323556964751,0,0,0.307435147943927,0,0,0,0.316036757935816,0,0,0,0.540183282093931,0.258717367565509,0,0,0.535106452806212,0.493647061806363,0.913394847343798,0,0,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0,0,0,0.341741761595705,0.619160603889667,0.370389054739423,0.188368457004691,0,0.228778173206523,1.18984900995699,1.39951452323658,1.10559979043539,0,0.316335993581135,0.406638934253697,0.432021363287205,0.209088296014469,0,0.269728692769641,0,0,0,0,0,0,0.330916980914195,0.194451188344048,0.258319646955462,0.337912250981556,0.117357238645754,0.13020438484395,0.104859344425711,0,0,0,0.405450430580328,0.308132871494482,0,1.07416017400489,0.79472541912506,0.240390899039938,0.590758108698309,0.706765149637033,0.457240839929999,0.907435666231565,0.38983152295901,1.25075394132428,2.68816875017609,0,0,0.269141569828427,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.512200817262403,0,0.209613162627982,0,0.222246727801615,0.206035057238894,0.64183841918363,0.758091635291392,0.50695859978048,0.565879024158229,0.187283014939765,0.256100609619477,0.287177344778066,0,0.231768651889711,0.38581844092741,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0.282328141245992,0.0846146078916765,0.182927972872773,0,0,0,0,0.0985044823755635,0.409231043169689,0.464810523557898,0,0.249810577937946,0,0.214871054048298,0.382576664137687,0,0|short_description=p3@Gramd1a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:52857 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VEF1,uniprot:F8WJ74 | |||
|association_with_transcript=-377bp_to_ENSMUST00000001280,ENSMUST00000085636,NM_027898,uc009gif.1,uc009gig.1_5end | |||
|cluster_id=chr7:31936446..31936467,- | |||
|description=CAGE_peak_3_at_Gramd1a_5end | |||
|id=chr7:31936446..31936467,- | |||
|ontology_enrichment_celltype=CL:0000838!1.40e-09!12;CL:0000084!2.82e-09!11;CL:0000827!2.82e-09!11;CL:0000542!2.52e-08!13;CL:0000051!2.52e-08!13;CL:0000791!6.29e-08!9;CL:0000789!6.29e-08!9;CL:0002420!6.29e-08!9;CL:0002419!6.29e-08!9;CL:0000790!6.29e-08!9;CL:0000624!2.48e-07!8;CL:0000738!6.70e-07!17;CL:0002087!6.70e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.42e-36,11;CL:0000827,6.42e-36,11;CL:0000838,9.28e-33,12;CL:0000542,4.39e-30,13;CL:0000051,4.39e-30,13;CL:0000791,6.72e-30,9;CL:0000789,6.72e-30,9;CL:0002420,6.72e-30,9;CL:0002419,6.72e-30,9;CL:0000790,6.72e-30,9;CL:0000624,3.00e-27,8;CL:0000738,1.58e-22,17;CL:0002087,1.58e-22,17;CL:0000893,6.62e-21,6;CL:0002489,6.62e-21,6;CL:0000898,6.62e-21,6;CL:0000809,6.62e-21,6;CL:0000810,6.62e-21,6;CL:0000895,6.62e-21,6;CL:0000808,6.62e-21,6;CL:0000894,6.62e-21,6;CL:0000806,6.62e-21,6;CL:0000807,6.62e-21,6;CL:0000805,6.62e-21,6;CL:0002425,6.62e-21,6;CL:0002436,6.62e-21,6;CL:0002427,6.62e-21,6;CL:0002428,6.62e-21,6;CL:0002429,6.62e-21,6;CL:0002433,6.62e-21,6;CL:0002431,6.62e-21,6;CL:0002432,6.62e-21,6;CL:0002031,1.16e-14,25;CL:0000034,3.03e-11,97;CL:0000988,5.26e-11,32;CL:0002032,5.26e-11,32;CL:0000037,5.26e-11,32;CL:0000837,5.26e-11,32;CL:0002613,3.14e-10,3;CL:0000723,1.75e-08,91;CL:0000048,1.75e-08,91;CL:0002320,4.86e-07,46;CL:0000134,4.86e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!6.72e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.19e-16,5;UBERON:0002435,2.19e-16,5;UBERON:0000204,2.19e-16,5;UBERON:0010082,2.19e-16,5;UBERON:0002370,8.79e-11,23;UBERON:0000974,8.79e-11,23;UBERON:0004807,8.79e-11,23;UBERON:0005058,8.79e-11,23;UBERON:0003351,8.79e-11,23;UBERON:0009113,8.79e-11,23;UBERON:0003295,8.79e-11,23;UBERON:0009722,8.79e-11,23;UBERON:0005562,8.79e-11,23;UBERON:0007690,8.79e-11,23;UBERON:0006562,2.86e-10,24;UBERON:0003408,2.86e-10,24;UBERON:0001557,2.86e-10,24;UBERON:0001042,2.86e-10,24;UBERON:0008814,2.86e-10,24;UBERON:0009145,2.86e-10,24;UBERON:0002420,3.67e-10,8;UBERON:0007245,3.67e-10,8;UBERON:0010009,3.67e-10,8;UBERON:0010011,3.67e-10,8;UBERON:0000454,3.67e-10,8;UBERON:0000072,5.83e-09,27;UBERON:0004177,3.08e-08,29;UBERON:0005057,3.08e-08,29;UBERON:0002384,4.86e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,2.06597317506522,6.47628121897667,7.95819389494778,1.36974374580404,2.39316476986009,1.19840510951844,2.27293046289393,0,0,0,0.157731082679119,0,0.42438965179803,0.255129870453209,1.19149141441062,1.56719873483361,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0.418531630736908,0,0,2.35292595212406,0.683045484958446,0.485510353031154,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0.439372365468944,0.194429899074283,0.419959264876088,0,0.503347818173209,1.45072428402269,1.00828139742739,0,0,0,0.809265843438391,0.528990979272033,1.90149421051854,0,0,0,0,0,0.299600110518405,0,0.622137673850866,1.21505344498522,0.210324961351382,0.856952953211411,0,0.61245399607477,0.862609239164127,1.83843757322004,0,0.255374676170375,0,1.31886287730194,1.00636407962651,1.56274011167028,0,0.56276261003168,0.15279824777681,1.17851434189467,0.284743361598206,0.745597783301202,0,0.151143120213571,0.869593466105033,0,0,0,0,0,0.140444420131752,0.340860645156116,0.519572009205738,0,0,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0.173485326766136,0,0.461230994512117,0.150722640552623,0.23517741427141,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0.209446706813455,0.255457055208591,0.479260498023681,0,0.889491589511453,0.149790639404823,1.37250180845588,1.88481528169297,0.347648640384553,0,0.83115217823824,0,0.101839363850316,0.248813941220186,0,0,0.130120442962704,0.229902104433473,0.180062129805349,0.150704817835715,0.204109497453984,0.2562274405697,0.468508622798644,0,0.215567992932842,0.567318240503458,0.879755620819744,0,0.556094498451196,0,0.61734640922383,0.59710280045548,0,0.51469581422943,0.568326998791185,0,0.234526059981096,0,0.23674473558521,0,0.154267112887378,0.465067889500816,0,0,0,0.164167464079095,0.0810688095458557,0.146199987425332,0.439100230582101,0.134206418760372,0.210289948564127,0.308713837137853,0,0,0,0.464473343720877,0.128867461322093,0.403367049246685,0,0.190225626112559,0,0.164698954724011,0,0,0,0,0,0,0,0.228497025219458,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0,0.470996183524124,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0.238043640886014,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0.172684981865896,0.289298117163023,0,0.54390568381871,0,0,0.481651769963376,0,0,0,0.315508219416257,0,0.861693590931196,0,0.445597348164788,0.566153061577665,0.404810701674894,0,0.395287777946524,0.321321316421807,0.141940085208269,0,0,0.164970122972535,0,0.485561272309963,0.302323556964751,0,0,0.307435147943927,0,0,0,0.316036757935816,0,0,0,0.540183282093931,0.258717367565509,0,0,0.535106452806212,0.493647061806363,0.913394847343798,0,0,0,0,0.322928853391811,0.0603129249281559,0.119372344003136,0,0,0,0.341741761595705,0.619160603889667,0.370389054739423,0.188368457004691,0,0.228778173206523,1.18984900995699,1.39951452323658,1.10559979043539,0,0.316335993581135,0.406638934253697,0.432021363287205,0.209088296014469,0,0.269728692769641,0,0,0,0,0,0,0.330916980914195,0.194451188344048,0.258319646955462,0.337912250981556,0.117357238645754,0.13020438484395,0.104859344425711,0,0,0,0.405450430580328,0.308132871494482,0,1.07416017400489,0.79472541912506,0.240390899039938,0.590758108698309,0.706765149637033,0.457240839929999,0.907435666231565,0.38983152295901,1.25075394132428,2.68816875017609,0,0,0.269141569828427,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.512200817262403,0,0.209613162627982,0,0.222246727801615,0.206035057238894,0.64183841918363,0.758091635291392,0.50695859978048,0.565879024158229,0.187283014939765,0.256100609619477,0.287177344778066,0,0.231768651889711,0.38581844092741,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0.282328141245992,0.0846146078916765,0.182927972872773,0,0,0,0,0.0985044823755635,0.409231043169689,0.464810523557898,0,0.249810577937946,0,0.214871054048298,0.382576664137687,0,0 | |||
|short_description=p3@Gramd1a | |||
}} |
Revision as of 02:17, 5 August 2015
Short description: | p3@Gramd1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gramd1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | -377bp_to_ENSMUST00000001280, ENSMUST00000085636, NM_027898, uc009gif.1, uc009gig.1_5end |
EntrezGene: | 52857 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.19e-16 | 5 |
striatum | 2.19e-16 | 5 |
ventral part of telencephalon | 2.19e-16 | 5 |
future corpus striatum | 2.19e-16 | 5 |
thymus | 8.79e-11 | 23 |
neck | 8.79e-11 | 23 |
respiratory system epithelium | 8.79e-11 | 23 |
hemolymphoid system gland | 8.79e-11 | 23 |
pharyngeal epithelium | 8.79e-11 | 23 |
thymic region | 8.79e-11 | 23 |
pharyngeal gland | 8.79e-11 | 23 |
entire pharyngeal arch endoderm | 8.79e-11 | 23 |
thymus primordium | 8.79e-11 | 23 |
early pharyngeal endoderm | 8.79e-11 | 23 |
pharynx | 2.86e-10 | 24 |
gland of gut | 2.86e-10 | 24 |
upper respiratory tract | 2.86e-10 | 24 |
chordate pharynx | 2.86e-10 | 24 |
pharyngeal arch system | 2.86e-10 | 24 |
pharyngeal region of foregut | 2.86e-10 | 24 |
basal ganglion | 3.67e-10 | 8 |
nuclear complex of neuraxis | 3.67e-10 | 8 |
aggregate regional part of brain | 3.67e-10 | 8 |
collection of basal ganglia | 3.67e-10 | 8 |
cerebral subcortex | 3.67e-10 | 8 |
segment of respiratory tract | 5.83e-09 | 27 |
hemopoietic organ | 3.08e-08 | 29 |
immune organ | 3.08e-08 | 29 |
connective tissue | 4.86e-07 | 46 |