FFCP PHASE1:Hg19::chr11:70963538..70963630,-
From FANTOM5_SSTAR
| Short description: | p1@SHANK2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_SHANK2_5end |
| Coexpression cluster: | C3198_salivary_breast_submaxillary_Intestinal_Hepatocyte_Prostate_thyroid |
| Association with transcript: | 0bp_to_ENST00000413503_5end |
| EntrezGene: | SHANK2 |
| HGNC: | 14295 |
| UniProt: | C9JFP8 |
| Genome view: | ZENBU |
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CAGE Expression
| Sample | p1@SHANK2 |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endodermal cell | 4.39e-23 | 58 |
| epithelial cell | 1.60e-21 | 253 |
| endo-epithelial cell | 9.51e-19 | 42 |
| respiratory epithelial cell | 3.67e-09 | 13 |
| epithelial cell of alimentary canal | 1.69e-08 | 20 |
| kidney cell | 3.44e-08 | 17 |
| kidney epithelial cell | 3.44e-08 | 17 |
| kidney tubule cell | 1.13e-07 | 10 |
| nephron tubule epithelial cell | 1.13e-07 | 10 |
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 2.48e-28 | 160 |
| endoderm | 2.48e-28 | 160 |
| presumptive endoderm | 2.48e-28 | 160 |
| digestive system | 1.78e-24 | 145 |
| digestive tract | 1.78e-24 | 145 |
| primitive gut | 1.78e-24 | 145 |
| subdivision of digestive tract | 7.27e-22 | 118 |
| trunk region element | 8.10e-19 | 101 |
| endo-epithelium | 2.88e-18 | 82 |
| subdivision of trunk | 1.27e-15 | 112 |
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 2.73e-14 | 106 |
| cell type cancer | 2.84e-13 | 143 |
| adenocarcinoma | 3.78e-09 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
