FF:10696-109G3
From FANTOM5_SSTAR
Name: | mesodermal tumor cell line:HIRS-BM |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
Download raw sequence, BAM & CTSS | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12191
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12191
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.176 |
10 | 10 | 0.0551 |
100 | 100 | 0.125 |
101 | 101 | 0.377 |
102 | 102 | 0.0912 |
103 | 103 | 0.421 |
104 | 104 | 0.186 |
105 | 105 | 0.0449 |
106 | 106 | 0.154 |
107 | 107 | 0.269 |
108 | 108 | 0.345 |
109 | 109 | 0.121 |
11 | 11 | 0.324 |
110 | 110 | 0.339 |
111 | 111 | 0.0723 |
112 | 112 | 0.668 |
113 | 113 | 0.946 |
114 | 114 | 0.393 |
115 | 115 | 0.00524 |
116 | 116 | 0.22 |
117 | 117 | 0.0388 |
118 | 118 | 0.192 |
119 | 119 | 0.567 |
12 | 12 | 0.303 |
120 | 120 | 0.462 |
121 | 121 | 0.513 |
122 | 122 | 0.865 |
123 | 123 | 0.0666 |
124 | 124 | 0.913 |
125 | 125 | 0.694 |
126 | 126 | 0.476 |
127 | 127 | 0.81 |
128 | 128 | 0.876 |
129 | 129 | 0.158 |
13 | 13 | 0.0816 |
130 | 130 | 0.0705 |
131 | 131 | 0.186 |
132 | 132 | 0.858 |
133 | 133 | 0.1 |
134 | 134 | 0.5 |
135 | 135 | 0.471 |
136 | 136 | 0.181 |
137 | 137 | 0.937 |
138 | 138 | 0.512 |
139 | 139 | 0.8 |
14 | 14 | 0.986 |
140 | 140 | 0.449 |
141 | 141 | 0.94 |
142 | 142 | 0.595 |
143 | 143 | 0.409 |
144 | 144 | 0.854 |
145 | 145 | 0.864 |
146 | 146 | 0.0854 |
147 | 147 | 0.61 |
148 | 148 | 0.0358 |
149 | 149 | 0.374 |
15 | 15 | 0.181 |
150 | 150 | 0.911 |
151 | 151 | 0.951 |
152 | 152 | 0.682 |
153 | 153 | 0.323 |
154 | 154 | 0.736 |
155 | 155 | 0.0722 |
156 | 156 | 0.61 |
157 | 157 | 0.631 |
158 | 158 | 0.867 |
159 | 159 | 0.483 |
16 | 16 | 0.881 |
160 | 160 | 0.122 |
161 | 161 | 0.173 |
162 | 162 | 0.462 |
163 | 163 | 0.683 |
164 | 164 | 0.034 |
165 | 165 | 0.253 |
166 | 166 | 0.0438 |
167 | 167 | 0.112 |
168 | 168 | 0.395 |
169 | 169 | 0.296 |
17 | 17 | 0.574 |
18 | 18 | 0.241 |
19 | 19 | 0.846 |
2 | 2 | 0.685 |
20 | 20 | 0.34 |
21 | 21 | 0.349 |
22 | 22 | 0.915 |
23 | 23 | 0.0942 |
24 | 24 | 0.773 |
25 | 25 | 0.44 |
26 | 26 | 0.271 |
27 | 27 | 0.861 |
28 | 28 | 0.427 |
29 | 29 | 0.133 |
3 | 3 | 0.356 |
30 | 30 | 0.176 |
31 | 31 | 0.277 |
32 | 32 | 0.6 |
33 | 33 | 0.327 |
34 | 34 | 0.343 |
35 | 35 | 0.522 |
36 | 36 | 0.241 |
37 | 37 | 0.136 |
38 | 38 | 0.724 |
39 | 39 | 0.571 |
4 | 4 | 0.866 |
40 | 40 | 0.111 |
41 | 41 | 0.186 |
42 | 42 | 0.756 |
43 | 43 | 0.833 |
44 | 44 | 0.00796 |
45 | 45 | 0.162 |
46 | 46 | 0.372 |
47 | 47 | 0.11 |
48 | 48 | 0.152 |
49 | 49 | 0.926 |
5 | 5 | 0.202 |
50 | 50 | 0.758 |
51 | 51 | 0.936 |
52 | 52 | 0.804 |
53 | 53 | 0.72 |
54 | 54 | 0.487 |
55 | 55 | 0.125 |
56 | 56 | 0.881 |
57 | 57 | 0.776 |
58 | 58 | 0.38 |
59 | 59 | 0.936 |
6 | 6 | 0.503 |
60 | 60 | 0.738 |
61 | 61 | 0.152 |
62 | 62 | 0.283 |
63 | 63 | 0.955 |
64 | 64 | 0.47 |
65 | 65 | 0.818 |
66 | 66 | 0.227 |
67 | 67 | 0.804 |
68 | 68 | 0.547 |
69 | 69 | 0.946 |
7 | 7 | 0.998 |
70 | 70 | 0.431 |
71 | 71 | 0.0263 |
72 | 72 | 0.657 |
73 | 73 | 0.259 |
74 | 74 | 0.492 |
75 | 75 | 0.0364 |
76 | 76 | 0.144 |
77 | 77 | 0.814 |
78 | 78 | 0.676 |
79 | 79 | 0.139 |
8 | 8 | 0.226 |
80 | 80 | 0.00483 |
81 | 81 | 0.622 |
82 | 82 | 0.46 |
83 | 83 | 0.614 |
84 | 84 | 0.069 |
85 | 85 | 0.494 |
86 | 86 | 0.541 |
87 | 87 | 0.275 |
88 | 88 | 0.492 |
89 | 89 | 0.87 |
9 | 9 | 0.322 |
90 | 90 | 0.515 |
91 | 91 | 0.761 |
92 | 92 | 0.658 |
93 | 93 | 0.149 |
94 | 94 | 0.885 |
95 | 95 | 0.071 |
96 | 96 | 0.0757 |
97 | 97 | 0.102 |
98 | 98 | 0.0584 |
99 | 99 | 0.509 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12191
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000222 (mesodermal cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0002321 (embryonic cell)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA