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MCL coexpression mm9:81

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:11329054..11329067,+p4@Timm8a1
Mm9::chr10:117690196..117690207,+p@chr10:117690196..117690207
+
Mm9::chr10:14242869..14242871,+p1@Gm10335
Mm9::chr10:19928241..19928252,+p3@Gm6251
Mm9::chr10:38918239..38918248,+p@chr10:38918239..38918248
+
Mm9::chr10:42028226..42028231,+p@chr10:42028226..42028231
+
Mm9::chr10:69572772..69572775,+p@chr10:69572772..69572775
+
Mm9::chr11:116244019..116244031,+p1@ENSMUST00000121547
Mm9::chr11:21853106..21853115,+p1@ENSMUST00000120694
Mm9::chr11:41404512..41404517,+p1@ENSMUST00000117114
Mm9::chr11:46375506..46375508,+p1@ENSMUST00000120821
Mm9::chr11:54214454..54214478,+p2@ENSMUST00000144172
Mm9::chr11:69387321..69387335,+p@chr11:69387321..69387335
+
Mm9::chr11:69730802..69730816,+p@chr11:69730802..69730816
+
Mm9::chr11:86444564..86444566,-p1@ENSMUST00000117851
Mm9::chr11:97643691..97643713,-p1@LOC100044627
p1@Rpl23
Mm9::chr11:99793334..99793343,+p1@ENSMUST00000117567
Mm9::chr12:109951983..109951990,+p@chr12:109951983..109951990
+
Mm9::chr12:12029803..12029807,+p1@Gm4294
Mm9::chr12:48913864..48913876,+p@chr12:48913864..48913876
+
Mm9::chr13:109460770..109460775,+p1@Gm9000
Mm9::chr13:113727762..113727768,+p@chr13:113727762..113727768
+
Mm9::chr13:28349459..28349469,+p1@ENSMUST00000171255
Mm9::chr13:3298110..3298121,+p@chr13:3298110..3298121
+
Mm9::chr13:38296797..38296831,+p1@Snrnp48
Mm9::chr13:97972911..97972912,-p@chr13:97972911..97972912
-
Mm9::chr13:99586677..99586693,+p@chr13:99586677..99586693
+
Mm9::chr14:106081041..106081048,+p3@Rpl41
Mm9::chr14:65569151..65569160,+p4@Ints9
Mm9::chr14:74851342..74851343,+p@chr14:74851342..74851343
+
Mm9::chr15:102156586..102156602,+p2@Pfdn5
Mm9::chr15:102156603..102156612,+p5@Pfdn5
Mm9::chr15:102465409..102465418,+p1@ENSMUST00000038613
p1@ENSMUST00000142604
Mm9::chr15:103070873..103070884,+p1@Gm5643
Mm9::chr15:23419622..23419624,+p@chr15:23419622..23419624
+
Mm9::chr15:27566232..27566236,+p@chr15:27566232..27566236
+
Mm9::chr15:42980323..42980326,-p@chr15:42980323..42980326
-
Mm9::chr15:5066634..5066678,+p1@Gm13826
p1@Rpl37
Mm9::chr15:62717924..62717930,+p@chr15:62717924..62717930
+
Mm9::chr15:84838496..84838497,+p@chr15:84838496..84838497
+
Mm9::chr15:8864095..8864115,+p@chr15:8864095..8864115
+
Mm9::chr16:23050297..23050300,+p@chr16:23050297..23050300
+
Mm9::chr16:47212449..47212472,+p@chr16:47212449..47212472
+
Mm9::chr16:55966492..55966517,+p2@Rpl24
p2@Zbtb11
Mm9::chr17:28465521..28465536,+p1@Rpl10a
Mm9::chr17:46167589..46167592,+p@chr17:46167589..46167592
+
Mm9::chr17:71278346..71278347,+p1@Gm16519
Mm9::chr17:78890889..78890892,+p1@ENSMUST00000079363
Mm9::chr17:8358782..8358787,+p@chr17:8358782..8358787
+
Mm9::chr18:12332062..12332076,+p@chr18:12332062..12332076
+
Mm9::chr18:20841502..20841507,-p1@Gm10269
Mm9::chr18:32994963..32994967,-p@chr18:32994963..32994967
-
Mm9::chr18:35696193..35696200,+p1@ENSMUST00000081864
Mm9::chr18:35931365..35931395,+p5@Ube2d2
Mm9::chr18:47575034..47575042,-p@chr18:47575034..47575042
-
Mm9::chr18:6332585..6332607,+p3@Gm6341
p3@Rpl27
Mm9::chr19:11195841..11195860,+p@chr19:11195841..11195860
+
Mm9::chr19:11195873..11195901,+p@chr19:11195873..11195901
+
Mm9::chr19:22515503..22515521,+p@chr19:22515503..22515521
+
Mm9::chr19:23693815..23693817,+p1@ENSMUST00000104916
Mm9::chr19:24950111..24950129,+p4@Cycs
p4@Gm10053
Mm9::chr19:28817068..28817078,-p1@Gm5623
Mm9::chr19:42234118..42234125,+p@chr19:42234118..42234125
+
Mm9::chr19:6057925..6057958,+p1@Fau
Mm9::chr19:9041665..9041698,+p2@Eef1g
Mm9::chr19:9290828..9290835,+p1@ENSMUST00000073056
Mm9::chr1:158296168..158296175,+p1@Gm2000
p2@Rpl35
Mm9::chr1:39424745..39424776,+p1@Gm10191
p1@Gm13004
p1@Gm7689
p1@Gm8759
p1@LOC100505081
p1@LOC638399
p1@Rpl31
Mm9::chr1:60760757..60760764,+p1@ENSMUST00000122226
Mm9::chr1:7058444..7058445,+p@chr1:7058444..7058445
+
Mm9::chr1:72134390..72134394,+p@chr1:72134390..72134394
+
Mm9::chr1:72506032..72506037,+p1@ENSMUST00000146593
Mm9::chr1:88423263..88423297,+p1@Gm15466
p1@Ptma
Mm9::chr1:97395158..97395184,+p1@ENSMUST00000117288
Mm9::chr2:121544241..121544245,+p1@ENSMUST00000118165
Mm9::chr2:126736110..126736112,+p@chr2:126736110..126736112
+
Mm9::chr2:143681350..143681356,+p1@ENSMUST00000120038
Mm9::chr2:153651786..153651801,+p1@ENSMUST00000167274
Mm9::chr2:155505556..155505559,+p@chr2:155505556..155505559
+
Mm9::chr2:23057456..23057462,+p1@ENSMUST00000117205
Mm9::chr2:26890177..26890188,+p1@ENSMUST00000119562
Mm9::chr2:34420490..34420497,+p1@ENSMUST00000119822
Mm9::chr2:35282065..35282069,+p@chr2:35282065..35282069
+
Mm9::chr2:40411202..40411213,+p1@ENSMUST00000118928
Mm9::chr2:60173499..60173502,+p@chr2:60173499..60173502
+
Mm9::chr2:70297002..70297013,+p1@ENSMUST00000140507
Mm9::chr3:116547461..116547465,+p@chr3:116547461..116547465
+
Mm9::chr3:127215729..127215735,+p@chr3:127215729..127215735
+
Mm9::chr3:28704420..28704443,+p1@Rpl22l1
Mm9::chr3:59235156..59235161,+p@chr3:59235156..59235161
+
Mm9::chr3:89075829..89075830,+p@chr3:89075829..89075830
+
Mm9::chr3:93081986..93081994,+p1@ENSMUST00000122125
Mm9::chr3:95426158..95426169,+p1@ENSMUST00000074353
Mm9::chr4:115324924..115324925,+p1@ENSMUST00000119777
Mm9::chr4:132782458..132782461,+p@chr4:132782458..132782461
+
Mm9::chr4:151699940..151699985,+p1@LOC100504863
p1@Rpl22
Mm9::chr4:3297134..3297135,+p@chr4:3297134..3297135
+
Mm9::chr4:33051742..33051793,+p1@ENSMUST00000077575
Mm9::chr4:83243182..83243191,+p@chr4:83243182..83243191
+
Mm9::chr5:104411950..104411954,+p@chr5:104411950..104411954
+
Mm9::chr5:108946150..108946160,+p1@ENSMUST00000089781
Mm9::chr5:113307063..113307067,+p@chr5:113307063..113307067
+
Mm9::chr5:116009514..116009528,+p1@Rplp0
Mm9::chr5:124972650..124972655,+p@chr5:124972650..124972655
+
Mm9::chr5:138042787..138042788,+p@chr5:138042787..138042788
+
Mm9::chr5:147889121..147889161,+p1@Polr1d
Mm9::chr5:23356408..23356425,+p1@2700038G22Rik
p1@Snord93
Mm9::chr5:3236381..3236387,+p1@ENSMUST00000078810
Mm9::chr5:34101982..34101985,+p1@ENSMUST00000080166
p1@ENSMUST00000131139
Mm9::chr5:41733335..41733337,+p@chr5:41733335..41733337
+
Mm9::chr5:72438366..72438378,+p1@ENSMUST00000118662
Mm9::chr6:122645989..122645994,+p1@ENSMUST00000079261
Mm9::chr6:126940558..126940603,+p@chr6:126940558..126940603
+
Mm9::chr6:136810374..136810377,+p@chr6:136810374..136810377
+
Mm9::chr6:82902731..82902737,+p@chr6:82902731..82902737
+
Mm9::chr6:85026173..85026178,+p1@ENSMUST00000119728
Mm9::chr6:85839303..85839305,+p@chr6:85839303..85839305
+
Mm9::chr6:99720519..99720522,+p@chr6:99720519..99720522
+
Mm9::chr7:115006474..115006481,+p1@ENSMUST00000084759
Mm9::chr7:137145719..137145723,+p@chr7:137145719..137145723
+
Mm9::chr7:16531406..16531418,-p3@Gltscr2
Mm9::chr7:17305274..17305289,-p@chr7:17305274..17305289
-
Mm9::chr7:20497151..20497154,+p1@ENSMUST00000162324
Mm9::chr7:25647447..25647456,+p3@ENSMUST00000052897
Mm9::chr7:29135759..29135781,+p1@LOC100505015
p1@Rps16
Mm9::chr7:3655627..3655653,+p1@Rps9
Mm9::chr7:46843895..46843915,+p2@Gm2058
Mm9::chr8:126377691..126377694,+p1@ENSMUST00000118982
Mm9::chr8:19784715..19784746,+p1@ENSMUST00000081370
p2@uc009lat.1
Mm9::chr8:5639514..5639535,+p2@ENSMUST00000051687
Mm9::chr8:89571588..89571613,+p2@Gm12270
p2@Gm15483
p2@Gm6834
p2@Rps13
Mm9::chr9:119705758..119705760,+p@chr9:119705758..119705760
+
Mm9::chr9:120036897..120036911,+p1@LOC100505031
p1@LOC636901
p1@Rpsa
Mm9::chr9:123840094..123840116,+p@chr9:123840094..123840116
+
Mm9::chr9:31885816..31885825,+p@chr9:31885816..31885825
+
Mm9::chr9:40295247..40295270,+p@chr9:40295247..40295270
+
Mm9::chr9:48258361..48258369,+p4@Gm5616
p4@LOC100045968
p4@LOC100505330
p4@Nhp2l1
Mm9::chr9:48258396..48258425,+p3@Gm5616
p3@LOC100045968
p3@LOC100505330
p3@Nhp2l1
Mm9::chr9:70700352..70700381,+p1@ENSMUST00000105101
Mm9::chr9:71908703..71908704,+p1@ENSMUST00000086799
Mm9::chr9:96805814..96805823,+p@chr9:96805814..96805823
+
Mm9::chrX:124795796..124795836,+p1@ENSMUST00000121299
Mm9::chrX:137331841..137331853,+p1@ENSMUST00000117257
Mm9::chrX:138495327..138495342,+p1@ENSMUST00000121026
Mm9::chrX:151939481..151939490,-p1@ENSMUST00000121482
Mm9::chrX:153956515..153956532,-p@chrX:153956515..153956532
-
Mm9::chrX:154587757..154587760,+p1@ENSMUST00000120024
Mm9::chrX:154686705..154686706,+p1@ENSMUST00000118644
Mm9::chrX:159004741..159004750,+p1@ENSMUST00000073637
Mm9::chrX:43809518..43809524,-p1@Gm4987
Mm9::chrX:48374047..48374057,+p@chrX:48374047..48374057
+
Mm9::chrX:50125940..50125951,-p1@ENSMUST00000119571
Mm9::chrX:7624314..7624331,+p1@ENSMUST00000119726
Mm9::chrX:99384649..99384677,-p1@Rps4x


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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