FFCP PHASE1:Hg19::chr16:20912031..20912042,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57149|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25074|TSSclassifier=S|UniProt=O43325|association_with_transcript=-32bp_to_ENST00000219168,ENST00000412082,NM_001128301,NM_001128302,uc002dia.3,uc010bwl.2,uc010bwm.2_5end|coexpression_cluster_id=C3543|description=CAGE_peak_14_at_LYRM1_5end|id=chr16:20912031..20912042,+|ontology_enrichment_celltype=CL:0002139!5.25e-12!24;CL:0000115!2.92e-09!35;CL:0002078!4.55e-09!44;CL:0000213!8.83e-09!57;CL:0000215!8.83e-09!57;CL:0000071!1.40e-08!18;CL:0002546!1.40e-08!18|ontology_enrichment_celltype_v019=CL:0002138;5.68e-23;6!CL:0000115;2.16e-22;36!CL:0002139;2.85e-21;24!CL:0002188;8.83e-16;5!CL:0002078;7.84e-14;45!CL:0002618;7.35e-12;3!CL:0000213;1.30e-11;58!CL:0000215;1.30e-11;58!CL:1000746;1.97e-11;7!CL:1000612;1.97e-11;7!CL:0000136;2.84e-10;13!CL:0000228;1.61e-09;1!CL:0002372;1.61e-09;1!CL:1000449;3.91e-09;15!CL:1000497;4.47e-08;17!CL:0002518;4.47e-08;17!CL:0000071;1.58e-07;18!CL:0002681;7.25e-07;12!CL:0002584;7.25e-07;12|ontology_enrichment_celltype_v019_2=CL:0000115,3.15e-26,36;CL:0005020,5.69e-23,6;CL:0002138,5.69e-23,6;CL:0005022,5.69e-23,6;CL:0002139,3.23e-21,24;CL:0002078,1.24e-20,45;CL:0000213,1.05e-18,58;CL:0000215,1.05e-18,58;CL:0002188,1.00e-15,5;CL:0002618,6.96e-12,3;CL:1000746,2.16e-11,7;CL:1000612,2.16e-11,7;CL:0000228,1.36e-09,1;CL:0002372,1.36e-09,1;CL:0000222,2.11e-09,121;CL:1000449,3.87e-09,15;CL:0000136,5.68e-09,15;CL:1000497,4.44e-08,17;CL:0002518,4.44e-08,17;CL:0000071,1.71e-07,18;CL:0002546,1.71e-07,18;CL:0002681,7.63e-07,12;CL:0002584,7.63e-07,12|ontology_enrichment_development_v019=CL:0005022;5.68e-23;6!CL:0002546;1.58e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:6193;7.82e-10;1|ontology_enrichment_disease_v019_2=DOID:6193,8.91e-10,1|ontology_enrichment_uberon=UBERON:0000055!6.56e-10!69;UBERON:0002049!2.81e-09!79;UBERON:0007798!2.81e-09!79;UBERON:0001986!1.40e-08!18;UBERON:0004638!1.40e-08!18;UBERON:0004852!1.40e-08!18;UBERON:0004872!1.73e-08!84;UBERON:0001981!2.39e-08!60;UBERON:0007500!2.39e-08!60;UBERON:0004537!2.39e-08!60;UBERON:0006965!2.39e-08!60;UBERON:0003914!2.69e-08!118;UBERON:0004535!7.97e-08!110;UBERON:0001009!8.95e-08!113;UBERON:0000025!1.41e-07!194;UBERON:0004111!1.55e-07!241;UBERON:0006914!8.29e-07!25|ontology_enrichment_uberon_v019=UBERON:0001473;2.70e-17;8!UBERON:0004536;2.70e-17;8!UBERON:0006558;2.70e-17;8!UBERON:0002465;7.03e-14;10!UBERON:0000074;1.97e-11;7!UBERON:0001229;1.97e-11;7!UBERON:0002134;4.27e-10;1!UBERON:0005208;4.27e-10;1!UBERON:0004145;4.27e-10;1!UBERON:0005946;4.27e-10;1!UBERON:0005965;4.27e-10;1!UBERON:0002078;4.27e-10;1!UBERON:0006555;3.91e-09;15!UBERON:0004819;3.91e-09;15!UBERON:0001285;3.91e-09;15!UBERON:0007684;3.91e-09;15!UBERON:0004638;1.58e-07;18!UBERON:0001986;1.58e-07;18!UBERON:0004852;1.58e-07;18!UBERON:0002066;1.83e-07;5!UBERON:0001225;7.25e-07;12!UBERON:0008987;7.25e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0001473,2.70e-17,8;UBERON:0004536,2.70e-17,8;UBERON:0006558,2.70e-17,8;UBERON:0002465,7.03e-14,10;UBERON:0010532,2.16e-11,7;UBERON:0000074,2.16e-11,7;UBERON:0001229,2.16e-11,7;UBERON:0001230,2.16e-11,7;UBERON:0003220,2.16e-11,7;UBERON:0005749,2.16e-11,7;UBERON:0004199,2.16e-11,7;UBERON:0004209,2.16e-11,7;UBERON:0004198,2.16e-11,7;UBERON:0002134,4.09e-10,1;UBERON:0005208,4.09e-10,1;UBERON:0005946,4.09e-10,1;UBERON:0005965,4.09e-10,1;UBERON:0002078,4.09e-10,1;UBERON:0005103,4.94e-10,8;UBERON:0000083,4.94e-10,8;UBERON:0009201,4.94e-10,8;UBERON:0006553,4.94e-10,8;UBERON:0003074,4.94e-10,8;UBERON:0003060,4.94e-10,8;UBERON:0004211,3.87e-09,15;UBERON:0009773,3.87e-09,15;UBERON:0001231,3.87e-09,15;UBERON:0001285,3.87e-09,15;UBERON:0007684,3.87e-09,15;UBERON:0004208,3.87e-09,15;UBERON:0000080,5.67e-09,9;UBERON:0002120,5.67e-09,9;UBERON:0004875,5.67e-09,9;UBERON:0005721,5.67e-09,9;UBERON:0005754,5.67e-09,9;UBERON:0007297,5.67e-09,9;UBERON:0000055,1.11e-08,68;UBERON:0006555,1.41e-08,16;UBERON:0004819,1.41e-08,16;UBERON:0004638,1.71e-07,18;UBERON:0001986,1.71e-07,18;UBERON:0004852,1.71e-07,18;UBERON:0002066,1.77e-07,5;UBERON:0004876,2.00e-07,11;UBERON:0002049,2.13e-07,78;UBERON:0007798,2.13e-07,78;UBERON:0001225,7.63e-07,12;UBERON:0008987,7.63e-07,12;UBERON:0003887,7.63e-07,12|phase1_expression=0.181678379270557,0.428201047781966,0.704772020479856,0,1.78784437770915,0,0,0,1.30592814099919,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0.369363174230364,0,0.313454721478088,0.85870796139317,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0.852449501065388,0,0.56738522469114,0.622822248995575,0.502497330513487,0,0.65156653411535,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57149 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |||
|TSSclassifier=S | |||
|UniProt=O43325 | |||
|association_with_transcript=-32bp_to_ENST00000219168,ENST00000412082,NM_001128301,NM_001128302,uc002dia.3,uc010bwl.2,uc010bwm.2_5end | |||
|coexpression_cluster_id=C3543 | |||
|description=CAGE_peak_14_at_LYRM1_5end | |||
|id=chr16:20912031..20912042,+ | |||
|ontology_enrichment_celltype=CL:0002139!5.25e-12!24;CL:0000115!2.92e-09!35;CL:0002078!4.55e-09!44;CL:0000213!8.83e-09!57;CL:0000215!8.83e-09!57;CL:0000071!1.40e-08!18;CL:0002546!1.40e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0002138;5.68e-23;6!CL:0000115;2.16e-22;36!CL:0002139;2.85e-21;24!CL:0002188;8.83e-16;5!CL:0002078;7.84e-14;45!CL:0002618;7.35e-12;3!CL:0000213;1.30e-11;58!CL:0000215;1.30e-11;58!CL:1000746;1.97e-11;7!CL:1000612;1.97e-11;7!CL:0000136;2.84e-10;13!CL:0000228;1.61e-09;1!CL:0002372;1.61e-09;1!CL:1000449;3.91e-09;15!CL:1000497;4.47e-08;17!CL:0002518;4.47e-08;17!CL:0000071;1.58e-07;18!CL:0002681;7.25e-07;12!CL:0002584;7.25e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.15e-26,36;CL:0005020,5.69e-23,6;CL:0002138,5.69e-23,6;CL:0005022,5.69e-23,6;CL:0002139,3.23e-21,24;CL:0002078,1.24e-20,45;CL:0000213,1.05e-18,58;CL:0000215,1.05e-18,58;CL:0002188,1.00e-15,5;CL:0002618,6.96e-12,3;CL:1000746,2.16e-11,7;CL:1000612,2.16e-11,7;CL:0000228,1.36e-09,1;CL:0002372,1.36e-09,1;CL:0000222,2.11e-09,121;CL:1000449,3.87e-09,15;CL:0000136,5.68e-09,15;CL:1000497,4.44e-08,17;CL:0002518,4.44e-08,17;CL:0000071,1.71e-07,18;CL:0002546,1.71e-07,18;CL:0002681,7.63e-07,12;CL:0002584,7.63e-07,12 | |||
|ontology_enrichment_development_v019=CL:0005022;5.68e-23;6!CL:0002546;1.58e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;7.82e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,8.91e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000055!6.56e-10!69;UBERON:0002049!2.81e-09!79;UBERON:0007798!2.81e-09!79;UBERON:0001986!1.40e-08!18;UBERON:0004638!1.40e-08!18;UBERON:0004852!1.40e-08!18;UBERON:0004872!1.73e-08!84;UBERON:0001981!2.39e-08!60;UBERON:0007500!2.39e-08!60;UBERON:0004537!2.39e-08!60;UBERON:0006965!2.39e-08!60;UBERON:0003914!2.69e-08!118;UBERON:0004535!7.97e-08!110;UBERON:0001009!8.95e-08!113;UBERON:0000025!1.41e-07!194;UBERON:0004111!1.55e-07!241;UBERON:0006914!8.29e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;2.70e-17;8!UBERON:0004536;2.70e-17;8!UBERON:0006558;2.70e-17;8!UBERON:0002465;7.03e-14;10!UBERON:0000074;1.97e-11;7!UBERON:0001229;1.97e-11;7!UBERON:0002134;4.27e-10;1!UBERON:0005208;4.27e-10;1!UBERON:0004145;4.27e-10;1!UBERON:0005946;4.27e-10;1!UBERON:0005965;4.27e-10;1!UBERON:0002078;4.27e-10;1!UBERON:0006555;3.91e-09;15!UBERON:0004819;3.91e-09;15!UBERON:0001285;3.91e-09;15!UBERON:0007684;3.91e-09;15!UBERON:0004638;1.58e-07;18!UBERON:0001986;1.58e-07;18!UBERON:0004852;1.58e-07;18!UBERON:0002066;1.83e-07;5!UBERON:0001225;7.25e-07;12!UBERON:0008987;7.25e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,2.70e-17,8;UBERON:0004536,2.70e-17,8;UBERON:0006558,2.70e-17,8;UBERON:0002465,7.03e-14,10;UBERON:0010532,2.16e-11,7;UBERON:0000074,2.16e-11,7;UBERON:0001229,2.16e-11,7;UBERON:0001230,2.16e-11,7;UBERON:0003220,2.16e-11,7;UBERON:0005749,2.16e-11,7;UBERON:0004199,2.16e-11,7;UBERON:0004209,2.16e-11,7;UBERON:0004198,2.16e-11,7;UBERON:0002134,4.09e-10,1;UBERON:0005208,4.09e-10,1;UBERON:0005946,4.09e-10,1;UBERON:0005965,4.09e-10,1;UBERON:0002078,4.09e-10,1;UBERON:0005103,4.94e-10,8;UBERON:0000083,4.94e-10,8;UBERON:0009201,4.94e-10,8;UBERON:0006553,4.94e-10,8;UBERON:0003074,4.94e-10,8;UBERON:0003060,4.94e-10,8;UBERON:0004211,3.87e-09,15;UBERON:0009773,3.87e-09,15;UBERON:0001231,3.87e-09,15;UBERON:0001285,3.87e-09,15;UBERON:0007684,3.87e-09,15;UBERON:0004208,3.87e-09,15;UBERON:0000080,5.67e-09,9;UBERON:0002120,5.67e-09,9;UBERON:0004875,5.67e-09,9;UBERON:0005721,5.67e-09,9;UBERON:0005754,5.67e-09,9;UBERON:0007297,5.67e-09,9;UBERON:0000055,1.11e-08,68;UBERON:0006555,1.41e-08,16;UBERON:0004819,1.41e-08,16;UBERON:0004638,1.71e-07,18;UBERON:0001986,1.71e-07,18;UBERON:0004852,1.71e-07,18;UBERON:0002066,1.77e-07,5;UBERON:0004876,2.00e-07,11;UBERON:0002049,2.13e-07,78;UBERON:0007798,2.13e-07,78;UBERON:0001225,7.63e-07,12;UBERON:0008987,7.63e-07,12;UBERON:0003887,7.63e-07,12 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.704772020479856,0,1.78784437770915,0,0,0,1.30592814099919,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0.369363174230364,0,0.313454721478088,0.85870796139317,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0.852449501065388,0,0.56738522469114,0.622822248995575,0.502497330513487,0,0.65156653411535,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0.130979075497713,0,0,0.649094787309367,0.348259474598534,0.132957960518865,0,0,0,0.596287222100115,0,2.08284300964557,0.56530794192401,0,0.825354125820202,0.208994966536811,0,0.71153252537342,1.33888245105868,1.20848795132744,0,0.488124115096339,0.367663080345869,0.81014194788176,1.3394959242612,1.34717623575702,0.675668882899933,0,0.949265659568129,0.549605231791222,0,0,0,0,0.25326102332916,0.529636723252875,0.860509862246441,0.354668382198357,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.340296549480063,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0.252320850875628,0,0,0,0,0.928735856063958,0,0,0,0,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.231860809950154,0.117408694235822,3.60916119402685,6.48179717607255,3.23432058798817,0,0,0,0,0.148631162288728,0,0,0,0,0.290633938513962,0,0.492663237895943,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0.128343036279748,0,0,0.773288812777695,0.502548796003046,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0,0.117141414992713,1.20378439891088,0,0,0,0.184369168541703,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,0,0.200506470303285,0,0.229628896329213,0,0,0,0.0770153371044148,0,1.46139224653261,0,2.27466768141793,0.850468526382578,1.29549549661284,4.62681758070868,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0.170453254832202,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0.823611089208164,0,0.202182481573316,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0.281695602532241,0.143411352204052,0.0982490410131212,0.7133421029625,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,5.01268954180134,0.169291777801603,0.1605880751037,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.439524537815682,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,0.796991953004279,0,0,0.102268682502155,0.123084805461069,0,0,0.537063524026827,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0.158936578980379,0,0,0.424059214301822,0,0,0.353830258013357,0,0,0,0,0,0,0.702793337176017,0,0,0.242780379534093,0,0,0,0.442306057399416,0.150323419414493,0,0,0,0.313932918407225,0,0.284609546029793,0,0,0,0,0,2.0638323896594,0,0.146178634172371,0,0,0.176512253383001,0,0,0,0.0633107959558787,0.195551382734803,0.240476460754601,0.426905989478705,0,0.144090417154106,0,0,0,0,0.235694034616795,0.951329442515298,0.104602846312333,0.101998217636322,0,0.600420288709789,0,0,0,0,0.558564802544508,0,5.0251111720377,0,0,0.446342914883745,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0,0.415440338029185,0,0,0.0607495566580247,0,0.236417121897595,0,0.105600336519406,0,0,0,0.662091970365432,0,0.542999601753713,0,0,0,0,0.170388021785422,0.226624183040251,0.146552233678082,0,0.258565912723101,0,0,0,0,0,0,0.496166021811951,0,0,0,0.544017803369474,1.5041393641362,0.306345576763462,1.31149052283922,0,0,0.122026264901963,0,1.72022758707021,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0.251567901752575,0.889811221596536,0.228840068396924,0.151230923763239,0.310874401165561,0.295710299979268,0,0.449803112163605,0.155262956876259,0.414706207840855,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0.343395705182793,0.336749488765919,0,0.192619830407303,0.643324774124777,0.521988583930423,0,0,0.244736704506468,0,2.16161013012681,0,0.176689145945881,0,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0.422624246717254,0.19998739585493,0,0,0,0.184105950251841,0,0,0,0.21564962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| |||
|short_description=p14@LYRM1 | |||
}} |
Revision as of 09:37, 11 September 2013
Short description: | p14@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_LYRM1_5end |
Coexpression cluster: | C3543_heart_Lymphatic_mature_retinoblastoma_medulla_Renal_Endothelial |
Association with transcript: | -32bp_to_ENST00000219168, ENST00000412082, NM_001128301, NM_001128302, uc002dia.3, uc010bwl.2, uc010bwm.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.15e-26 | 36 |
lymphangioblast | 5.69e-23 | 6 |
endothelial cell of lymphatic vessel | 5.69e-23 | 6 |
vascular lymphangioblast | 5.69e-23 | 6 |
endothelial cell of vascular tree | 3.23e-21 | 24 |
meso-epithelial cell | 1.24e-20 | 45 |
lining cell | 1.05e-18 | 58 |
barrier cell | 1.05e-18 | 58 |
glomerular endothelial cell | 1.00e-15 | 5 |
endothelial cell of umbilical vein | 6.96e-12 | 3 |
glomerular cell | 2.16e-11 | 7 |
kidney corpuscule cell | 2.16e-11 | 7 |
multinucleate cell | 1.36e-09 | 1 |
myotube | 1.36e-09 | 1 |
mesodermal cell | 2.11e-09 | 121 |
epithelial cell of nephron | 3.87e-09 | 15 |
fat cell | 5.68e-09 | 15 |
kidney cell | 4.44e-08 | 17 |
kidney epithelial cell | 4.44e-08 | 17 |
blood vessel endothelial cell | 1.71e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.71e-07 | 18 |
kidney cortical cell | 7.63e-07 | 12 |
renal cortical epithelial cell | 7.63e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 8.91e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.