FFCP PHASE1:Hg19::chr20:49348083..49348096,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84612|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16245|TSSclassifier=S|UniProt=Q9BYG5|association_with_transcript=2bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end|coexpression_cluster_id=C1871|description=CAGE_peak_3_at_PARD6B_5end|id=chr20:49348083..49348096,+|ontology_enrichment_celltype=CL:0000066!1.69e-12!254|ontology_enrichment_celltype_v019=CL:0000039;3.59e-10;7!CL:0000586;3.59e-10;7|ontology_enrichment_celltype_v019_2=CL:0000066,1.97e-11,253;CL:0000039,1.79e-10,7;CL:0000586,1.79e-10,7|ontology_enrichment_development_v019=UBERON:0001041;3.24e-12;30!UBERON:0009117;8.80e-09;10!UBERON:0005564;8.80e-09;10|ontology_enrichment_disease=DOID:305!3.91e-32!106;DOID:0050687!2.69e-31!143;DOID:162!2.61e-25!235;DOID:14566!1.96e-24!239;DOID:299!2.53e-13!25;DOID:7!6.84e-09!39;DOID:0050686!6.61e-08!137|ontology_enrichment_disease_v019=DOID:299;5.49e-16;25!DOID:305;1.27e-09;106!DOID:7;2.22e-08;39!DOID:5093;1.26e-07;4!DOID:1612;1.26e-07;4|ontology_enrichment_disease_v019_2=DOID:305,2.73e-27,106;DOID:0050687,1.51e-25,143;DOID:299,4.44e-16,25;DOID:162,1.71e-11,235;DOID:14566,6.72e-11,239;DOID:7,7.46e-10,39;DOID:5093,1.85e-07,4;DOID:1612,1.85e-07,4|ontology_enrichment_uberon=UBERON:0005177!7.60e-11!107;UBERON:0004921!2.26e-09!129;UBERON:0004185!2.26e-09!129;UBERON:0001007!4.47e-09!155;UBERON:0001555!4.47e-09!155;UBERON:0007026!4.47e-09!155;UBERON:0000077!1.56e-08!130;UBERON:0005911!2.96e-08!82;UBERON:0000466!2.99e-08!126;UBERON:0004119!6.32e-08!169;UBERON:0000925!6.32e-08!169;UBERON:0006595!6.32e-08!169;UBERON:0005172!1.02e-07!55;UBERON:0005173!1.02e-07!55;UBERON:0005409!2.45e-07!35;UBERON:0005156!7.34e-07!59;UBERON:0000990!7.34e-07!59;UBERON:0003886!9.43e-07!63|ontology_enrichment_uberon_v019=UBERON:0000058;1.14e-10;10!UBERON:0005631;1.08e-08;10!UBERON:0000158;1.08e-08;10!UBERON:0002294;5.98e-08;7!UBERON:0001173;5.98e-08;7!UBERON:0003135;2.55e-07;11!UBERON:0002394;8.20e-07;4!UBERON:0003928;8.20e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0005177,6.38e-13,101;UBERON:0009569,9.44e-09,112;UBERON:0005172,8.09e-08,54;UBERON:0005173,8.09e-08,54;UBERON:0003135,2.01e-07,11;UBERON:0005631,3.19e-07,14;UBERON:0000158,3.19e-07,14;UBERON:0002113,4.52e-07,26;UBERON:0003918,4.52e-07,26;UBERON:0011143,4.52e-07,26;UBERON:0005095,4.52e-07,26;UBERON:0007687,4.52e-07,26;UBERON:0002323,4.90e-07,46;UBERON:0004921,5.53e-07,118;UBERON:0005911,8.12e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,1.52908960491121,0.527533956456907,0,0,0,0,0,0,0,0,0.313454721478088,1.14494394852423,0.273748850145768,0.87879847716362,0,0.164201178899891,0.0787107813136792,0,0.383829398097213,0.309632246632152,0,0,0.369754010166788,0.154934401160603,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0.411202997999018,0.334372990781356,0,0,1.94826728407911,0.222820913770347,0.294605907474837,0,0,0.25618263945135,0,0,0.276350017785848,0.579606171470105,0.14828656316206,0,1.04535523804977,0.226618685395132,0.383220493601921,0.34362744548263,0.253019692019503,0.318565414324097,0.651083453856419,0,0.451725357233318,0.255973222308837,0,0,0.821127996921047,0.403213486449465,1.06976078313403,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0.567208902984407,0,0.175669571386252,1.24430121722827,0,0,0.324547393654683,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,1.34171076742555,1.19276791489337,0.929551542956147,1.24393266018445,1.51392510525377,1.82488679537915,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0,0.435758888184812,0,0,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,10.2080403990784,0,0,0,0.301586917234893,0.185176890317059,0,0,0,0.34779121492523,0,0,0,0,25.2865407346968,24.8960987007513,0,0.234004265139238,0,0.93733833986777,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0.266422179016099,0,0,0,0,0.355391948742546,0,3.91871190177462,0.871533458600294,2.59929777073348,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0.76228387266739,0,0,0.167516265334349,0.637938751653163,0,2.99161459204025,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,7.25156697549733,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0.902399225814824,1.5403067420883,0,1.46139224653261,2.32213583564327,0,0,0,0,1.08378575017541,0.501689773854853,2.03901018436031,0.831076008928724,1.11937377361089,0,0,1.28225062558195,0.984043937099117,1.62689197332152,2.57602529119306,0.27470839445503,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84612 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16245 | |||
|TSSclassifier=S | |||
|UniProt=Q9BYG5 | |||
|association_with_transcript=2bp_to_ENST00000371610,NM_032521,uc002xvo.2_5end | |||
|coexpression_cluster_id=C1871 | |||
|description=CAGE_peak_3_at_PARD6B_5end | |||
|id=chr20:49348083..49348096,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.69e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.59e-10;7!CL:0000586;3.59e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.97e-11,253;CL:0000039,1.79e-10,7;CL:0000586,1.79e-10,7 | |||
|ontology_enrichment_development_v019=UBERON:0001041;3.24e-12;30!UBERON:0009117;8.80e-09;10!UBERON:0005564;8.80e-09;10 | |||
|ontology_enrichment_disease=DOID:305!3.91e-32!106;DOID:0050687!2.69e-31!143;DOID:162!2.61e-25!235;DOID:14566!1.96e-24!239;DOID:299!2.53e-13!25;DOID:7!6.84e-09!39;DOID:0050686!6.61e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:299;5.49e-16;25!DOID:305;1.27e-09;106!DOID:7;2.22e-08;39!DOID:5093;1.26e-07;4!DOID:1612;1.26e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.73e-27,106;DOID:0050687,1.51e-25,143;DOID:299,4.44e-16,25;DOID:162,1.71e-11,235;DOID:14566,6.72e-11,239;DOID:7,7.46e-10,39;DOID:5093,1.85e-07,4;DOID:1612,1.85e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0005177!7.60e-11!107;UBERON:0004921!2.26e-09!129;UBERON:0004185!2.26e-09!129;UBERON:0001007!4.47e-09!155;UBERON:0001555!4.47e-09!155;UBERON:0007026!4.47e-09!155;UBERON:0000077!1.56e-08!130;UBERON:0005911!2.96e-08!82;UBERON:0000466!2.99e-08!126;UBERON:0004119!6.32e-08!169;UBERON:0000925!6.32e-08!169;UBERON:0006595!6.32e-08!169;UBERON:0005172!1.02e-07!55;UBERON:0005173!1.02e-07!55;UBERON:0005409!2.45e-07!35;UBERON:0005156!7.34e-07!59;UBERON:0000990!7.34e-07!59;UBERON:0003886!9.43e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000058;1.14e-10;10!UBERON:0005631;1.08e-08;10!UBERON:0000158;1.08e-08;10!UBERON:0002294;5.98e-08;7!UBERON:0001173;5.98e-08;7!UBERON:0003135;2.55e-07;11!UBERON:0002394;8.20e-07;4!UBERON:0003928;8.20e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,6.38e-13,101;UBERON:0009569,9.44e-09,112;UBERON:0005172,8.09e-08,54;UBERON:0005173,8.09e-08,54;UBERON:0003135,2.01e-07,11;UBERON:0005631,3.19e-07,14;UBERON:0000158,3.19e-07,14;UBERON:0002113,4.52e-07,26;UBERON:0003918,4.52e-07,26;UBERON:0011143,4.52e-07,26;UBERON:0005095,4.52e-07,26;UBERON:0007687,4.52e-07,26;UBERON:0002323,4.90e-07,46;UBERON:0004921,5.53e-07,118;UBERON:0005911,8.12e-07,82 | |||
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| |||
|short_description=p3@PARD6B | |||
}} |
Revision as of 09:06, 12 September 2013
Short description: | p3@PARD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PARD6B_5end |
Coexpression cluster: | C1871_breast_MCF7_clear_renal_amniotic_leiomyoblastoma_choriocarcinoma |
Association with transcript: | 2bp_to_ENST00000371610, NM_032521, uc002xvo.2_5end |
EntrezGene: | PARD6B |
HGNC: | 16245 |
UniProt: | Q9BYG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.97e-11 | 253 |
germ line cell | 1.79e-10 | 7 |
germ cell | 1.79e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 6.38e-13 | 101 |
subdivision of trunk | 9.44e-09 | 112 |
abdomen element | 8.09e-08 | 54 |
abdominal segment element | 8.09e-08 | 54 |
male reproductive organ | 2.01e-07 | 11 |
extraembryonic membrane | 3.19e-07 | 14 |
membranous layer | 3.19e-07 | 14 |
kidney | 4.52e-07 | 26 |
kidney mesenchyme | 4.52e-07 | 26 |
upper urinary tract | 4.52e-07 | 26 |
kidney rudiment | 4.52e-07 | 26 |
kidney field | 4.52e-07 | 26 |
body cavity | 4.90e-07 | 46 |
subdivision of digestive tract | 5.53e-07 | 118 |
endo-epithelium | 8.12e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.73e-27 | 106 |
cell type cancer | 1.51e-25 | 143 |
adenocarcinoma | 4.44e-16 | 25 |
cancer | 1.71e-11 | 235 |
disease of cellular proliferation | 6.72e-11 | 239 |
disease of anatomical entity | 7.46e-10 | 39 |
thoracic cancer | 1.85e-07 | 4 |
breast cancer | 1.85e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.