FFCP PHASE1:Hg19::chr6:160101463..160101476,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6648|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=11180|TSSclassifier=S|UniProt=|association_with_transcript=-60bp_to_uc003qsf.3_5end|coexpression_cluster_id=C107|description=CAGE_peak_24_at_SOD2_5end|id=chr6:160101463..160101476,-|ontology_enrichment_celltype=CL:0002057!7.69e-23!42;CL:0000860!2.94e-20!45;CL:0002194!1.74e-16!63;CL:0000576!1.74e-16!63;CL:0000040!1.74e-16!63;CL:0000559!1.74e-16!63;CL:0000766!7.34e-16!76;CL:0002009!1.79e-15!65;CL:0000839!3.11e-13!70;CL:0000557!7.89e-13!71;CL:0000763!1.33e-08!112;CL:0000049!1.33e-08!112|ontology_enrichment_celltype_v019=CL:0000860;3.76e-42;33!CL:0002057;3.76e-42;33!CL:0000473;5.62e-36;39!CL:0000234;5.62e-36;39!CL:0000576;1.16e-21;48!CL:0000766;1.51e-19;69!CL:0000775;5.86e-10;3!CL:0002623;7.97e-09;3!CL:0000763;1.10e-08;100|ontology_enrichment_celltype_v019_2=CL:0000473,8.66e-45,48;CL:0000234,8.66e-45,48;CL:0000860,2.10e-41,42;CL:0002057,2.10e-41,42;CL:0000766,7.11e-36,72;CL:0002194,3.82e-34,59;CL:0000576,3.82e-34,59;CL:0000040,3.82e-34,59;CL:0000559,3.82e-34,59;CL:0002009,8.98e-33,61;CL:0000839,1.05e-29,66;CL:0000557,3.79e-29,67;CL:0000763,5.77e-21,108;CL:0000049,5.77e-21,108;CL:0000738,5.31e-16,136;CL:0002087,5.85e-15,115;CL:0002031,5.17e-14,120;CL:0002032,3.64e-12,161;CL:0000837,3.64e-12,161;CL:0000037,2.65e-11,168;CL:0000988,2.66e-10,177;CL:0000775,6.51e-10,3;CL:0002623,9.68e-09,3|ontology_enrichment_development_v019=CL:0002057;1.49e-31;42!CL:0000049;8.00e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.88e-14!115;UBERON:0002371!5.31e-12!80;UBERON:0002193!9.76e-12!112;UBERON:0002390!7.55e-11!102;UBERON:0003061!7.55e-11!102;UBERON:0001474!4.39e-10!86;UBERON:0007023!5.21e-10!115;UBERON:0004765!6.74e-10!101;UBERON:0001434!6.74e-10!101;UBERON:0002204!1.14e-07!167|ontology_enrichment_uberon_v019=UBERON:0002133;6.26e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.04e-26,76;UBERON:0002405,1.94e-25,93;UBERON:0001474,3.61e-24,82;UBERON:0002193,1.17e-23,108;UBERON:0001434,4.79e-23,100;UBERON:0002390,6.97e-22,98;UBERON:0003061,6.97e-22,98;UBERON:0004765,2.61e-21,90;UBERON:0002204,3.57e-16,167;UBERON:0003081,9.25e-11,203;UBERON:0002133,6.19e-07,2|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0.602694528023977,2.19093027116212,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0.154934401160603,0,0,0,2.20598892217156,2.38711957787437,0,0,0,0.581592955118259,0.377875943688809,0.727752183563449,3.71886459049095,4.93401465626191,4.33588919253145,8.34307937734236,3.07392847834921,1.6553756092201,5.86067657252252,5.16387746867061,5.41705946377367,2.25890807451126,2.18324920046277,2.02251136000576,6.42776173978895,2.24650318953266,8.95071976118658,0.989553900560148,1.19678194572979,0.852449501065388,15.6712988859435,4.53908179752912,11.8336227309159,5.7787193009051,8.86520961314342,0.65156653411535,6.65939452896706,4.41933163185078,5.06339819905415,0.211255286311942,0,0,0.112328631146495,0,0.32145117339416,0,0,0.182664153764634,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0.869079113764942,0,2.43317435151318,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0.183201743930407,2.63560834872127,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.538842688278752,0,0,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0,0,0,1.48360157567134,0,0,0,0,0,0,0,1.20190447125277,0,0,0,0,0.300091096084402,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0.272746120590835,0,0,0.132529768321485,0,0,0,0.36497735907583,0,0.643240938192885,0,2.3218396401599,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0,0,0,0,0,6.33775174109154,4.91413608338813,1.18157981336281,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,1.01056513432752,4.62985512576611,3.99533719692656,0,0,0.492434012174795,0.234004265139238,0.445893486866185,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,1.09970290300263,2.43247561282381,2.00902836572851,10.5416969741516,0,0,0,0,1.02738161275192,0,0.112085143993527,0,0,0,0,0,0,0,0,6.74106321552464,20.9413021442817,2.07207756718018,0.36807447515742,0,0.271265023699736,1.03985430765404,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0.74709290462411,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0,0,0,0.0920809889358963,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0.322260734604821,0.145016693914229,0.170453254832202,0,0.165284915360978,0.192190067365106,0,0.20231556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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-60bp_to_uc003qsf.3_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_24_at_SOD2_5end | |||
|id=chr6:160101463..160101476,- | |||
|ontology_enrichment_celltype=CL:0002057!7.69e-23!42;CL:0000860!2.94e-20!45;CL:0002194!1.74e-16!63;CL:0000576!1.74e-16!63;CL:0000040!1.74e-16!63;CL:0000559!1.74e-16!63;CL:0000766!7.34e-16!76;CL:0002009!1.79e-15!65;CL:0000839!3.11e-13!70;CL:0000557!7.89e-13!71;CL:0000763!1.33e-08!112;CL:0000049!1.33e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.76e-42;33!CL:0002057;3.76e-42;33!CL:0000473;5.62e-36;39!CL:0000234;5.62e-36;39!CL:0000576;1.16e-21;48!CL:0000766;1.51e-19;69!CL:0000775;5.86e-10;3!CL:0002623;7.97e-09;3!CL:0000763;1.10e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.66e-45,48;CL:0000234,8.66e-45,48;CL:0000860,2.10e-41,42;CL:0002057,2.10e-41,42;CL:0000766,7.11e-36,72;CL:0002194,3.82e-34,59;CL:0000576,3.82e-34,59;CL:0000040,3.82e-34,59;CL:0000559,3.82e-34,59;CL:0002009,8.98e-33,61;CL:0000839,1.05e-29,66;CL:0000557,3.79e-29,67;CL:0000763,5.77e-21,108;CL:0000049,5.77e-21,108;CL:0000738,5.31e-16,136;CL:0002087,5.85e-15,115;CL:0002031,5.17e-14,120;CL:0002032,3.64e-12,161;CL:0000837,3.64e-12,161;CL:0000037,2.65e-11,168;CL:0000988,2.66e-10,177;CL:0000775,6.51e-10,3;CL:0002623,9.68e-09,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.49e-31;42!CL:0000049;8.00e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.88e-14!115;UBERON:0002371!5.31e-12!80;UBERON:0002193!9.76e-12!112;UBERON:0002390!7.55e-11!102;UBERON:0003061!7.55e-11!102;UBERON:0001474!4.39e-10!86;UBERON:0007023!5.21e-10!115;UBERON:0004765!6.74e-10!101;UBERON:0001434!6.74e-10!101;UBERON:0002204!1.14e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;6.26e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.04e-26,76;UBERON:0002405,1.94e-25,93;UBERON:0001474,3.61e-24,82;UBERON:0002193,1.17e-23,108;UBERON:0001434,4.79e-23,100;UBERON:0002390,6.97e-22,98;UBERON:0003061,6.97e-22,98;UBERON:0004765,2.61e-21,90;UBERON:0002204,3.57e-16,167;UBERON:0003081,9.25e-11,203;UBERON:0002133,6.19e-07,2 | |||
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| |||
|short_description=p24@SOD2 | |||
}} |
Revision as of 19:05, 13 September 2013
Short description: | p24@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_24_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | -60bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.66e-45 | 48 |
phagocyte | 8.66e-45 | 48 |
classical monocyte | 2.10e-41 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.10e-41 | 42 |
myeloid leukocyte | 7.11e-36 | 72 |
monopoietic cell | 3.82e-34 | 59 |
monocyte | 3.82e-34 | 59 |
monoblast | 3.82e-34 | 59 |
promonocyte | 3.82e-34 | 59 |
macrophage dendritic cell progenitor | 8.98e-33 | 61 |
myeloid lineage restricted progenitor cell | 1.05e-29 | 66 |
granulocyte monocyte progenitor cell | 3.79e-29 | 67 |
myeloid cell | 5.77e-21 | 108 |
common myeloid progenitor | 5.77e-21 | 108 |
leukocyte | 5.31e-16 | 136 |
nongranular leukocyte | 5.85e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 5.17e-14 | 120 |
hematopoietic oligopotent progenitor cell | 3.64e-12 | 161 |
hematopoietic multipotent progenitor cell | 3.64e-12 | 161 |
hematopoietic stem cell | 2.65e-11 | 168 |
hematopoietic cell | 2.66e-10 | 177 |
neutrophil | 6.51e-10 | 3 |
acinar cell of salivary gland | 9.68e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.04e-26 | 76 |
immune system | 1.94e-25 | 93 |
bone element | 3.61e-24 | 82 |
hemolymphoid system | 1.17e-23 | 108 |
skeletal system | 4.79e-23 | 100 |
hematopoietic system | 6.97e-22 | 98 |
blood island | 6.97e-22 | 98 |
skeletal element | 2.61e-21 | 90 |
musculoskeletal system | 3.57e-16 | 167 |
lateral plate mesoderm | 9.25e-11 | 203 |
atrioventricular valve | 6.19e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.