FFCP PHASE1:Mm9::chr3:101330969..101330979,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=88|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:101330969..101330979,+|id=chr3:101330969..101330979,+|ontology_enrichment_celltype=CL:0002563!4.75e-19!9;CL:0002251!4.75e-19!9;CL:0000239!1.19e-16!6;CL:0000677!1.19e-16!6;CL:0000212!1.19e-16!6;CL:0000584!1.19e-16!6;CL:0000066!5.67e-16!25;CL:0000075!3.62e-14!7;CL:0000223!5.15e-12!20;CL:0002076!7.40e-11!15;CL:0000473!8.29e-09!3;CL:0000627!8.29e-09!3;CL:0000682!8.29e-09!3|ontology_enrichment_celltype_v019_2=CL:0002563,2.33e-21,9;CL:0002251,2.33e-21,9;CL:0000239,3.81e-15,6;CL:0000677,3.81e-15,6;CL:0000584,3.81e-15,6;CL:0000075,5.20e-13,7;CL:0000066,6.39e-13,25;CL:0002076,1.15e-12,15;CL:0000223,2.16e-09,20;CL:0000682,5.43e-08,3;CL:0002250,8.73e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.52e-24!15;UBERON:0001242!2.09e-24!13;UBERON:0000060!2.09e-24!13;UBERON:0001262!2.09e-24!13;UBERON:0004786!2.09e-24!13;UBERON:0003350!4.75e-19!9;UBERON:0004808!4.75e-19!9;UBERON:0001277!4.75e-19!9;UBERON:0000160!5.43e-17!43;UBERON:0000485!2.51e-15!11;UBERON:0004923!2.45e-14!24;UBERON:0005409!3.04e-11!59|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.82e-32,13;UBERON:0001262,2.82e-32,13;UBERON:0004786,2.82e-32,13;UBERON:0000160,2.80e-31,31;UBERON:0000344,7.73e-28,15;UBERON:0003350,2.33e-21,9;UBERON:0004808,2.33e-21,9;UBERON:0001277,2.33e-21,9;UBERON:0005409,5.16e-20,47;UBERON:0000485,2.06e-17,11;UBERON:0004923,5.36e-17,24;UBERON:0000331,5.01e-08,3;UBERON:0002116,5.01e-08,3;UBERON:0001204,5.01e-08,3;UBERON:0001168,5.01e-08,3;UBERON:0004921,4.49e-07,114;UBERON:0001007,6.46e-07,116;UBERON:0001555,6.46e-07,116;UBERON:0007026,6.46e-07,116;UBERON:0004119,9.20e-07,118;UBERON:0000925,9.20e-07,118;UBERON:0006595,9.20e-07,118|phase1_expression=0,5.23463111459042,6.3699893514535,12.0985684522732,12.5223932486587,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,3.44539178469012,2.15380998079537,0.215471232685889,2.85035129184561,3.2763916868791,0,0,0,0,2.59966457776147,0,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0.649776417447669,0,0,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.05780226665418,0,0,0,0,0,0,1.42358718463353,0,0,0,0,4.49409704327111,0.864552199498777,1.99141273254367,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.0632365371242573,0,0.156998727841375,1.60416313098341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:101330969..101330979,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:101330969..101330979,+ | |||
|id=chr3:101330969..101330979,+ | |||
|ontology_enrichment_celltype=CL:0002563!4.75e-19!9;CL:0002251!4.75e-19!9;CL:0000239!1.19e-16!6;CL:0000677!1.19e-16!6;CL:0000212!1.19e-16!6;CL:0000584!1.19e-16!6;CL:0000066!5.67e-16!25;CL:0000075!3.62e-14!7;CL:0000223!5.15e-12!20;CL:0002076!7.40e-11!15;CL:0000473!8.29e-09!3;CL:0000627!8.29e-09!3;CL:0000682!8.29e-09!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.33e-21,9;CL:0002251,2.33e-21,9;CL:0000239,3.81e-15,6;CL:0000677,3.81e-15,6;CL:0000584,3.81e-15,6;CL:0000075,5.20e-13,7;CL:0000066,6.39e-13,25;CL:0002076,1.15e-12,15;CL:0000223,2.16e-09,20;CL:0000682,5.43e-08,3;CL:0002250,8.73e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.52e-24!15;UBERON:0001242!2.09e-24!13;UBERON:0000060!2.09e-24!13;UBERON:0001262!2.09e-24!13;UBERON:0004786!2.09e-24!13;UBERON:0003350!4.75e-19!9;UBERON:0004808!4.75e-19!9;UBERON:0001277!4.75e-19!9;UBERON:0000160!5.43e-17!43;UBERON:0000485!2.51e-15!11;UBERON:0004923!2.45e-14!24;UBERON:0005409!3.04e-11!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.82e-32,13;UBERON:0001262,2.82e-32,13;UBERON:0004786,2.82e-32,13;UBERON:0000160,2.80e-31,31;UBERON:0000344,7.73e-28,15;UBERON:0003350,2.33e-21,9;UBERON:0004808,2.33e-21,9;UBERON:0001277,2.33e-21,9;UBERON:0005409,5.16e-20,47;UBERON:0000485,2.06e-17,11;UBERON:0004923,5.36e-17,24;UBERON:0000331,5.01e-08,3;UBERON:0002116,5.01e-08,3;UBERON:0001204,5.01e-08,3;UBERON:0001168,5.01e-08,3;UBERON:0004921,4.49e-07,114;UBERON:0001007,6.46e-07,116;UBERON:0001555,6.46e-07,116;UBERON:0007026,6.46e-07,116;UBERON:0004119,9.20e-07,118;UBERON:0000925,9.20e-07,118;UBERON:0006595,9.20e-07,118 | |||
|phase1_expression=0,5.23463111459042,6.3699893514535,12.0985684522732,12.5223932486587,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,3.44539178469012,2.15380998079537,0.215471232685889,2.85035129184561,3.2763916868791,0,0,0,0,2.59966457776147,0,1.83752420636132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0.649776417447669,0,0,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.05780226665418,0,0,0,0,0,0,1.42358718463353,0,0,0,0,4.49409704327111,0.864552199498777,1.99141273254367,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.0632365371242573,0,0.156998727841375,1.60416313098341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.582961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:101330969..101330979,+ | |||
}} |
Revision as of 01:00, 14 September 2013
Short description: | p@chr3:101330969..101330979, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:101330969..101330979, + |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.33e-21 | 9 |
epithelial cell of alimentary canal | 2.33e-21 | 9 |
brush border epithelial cell | 3.81e-15 | 6 |
gut absorptive cell | 3.81e-15 | 6 |
enterocyte | 3.81e-15 | 6 |
columnar/cuboidal epithelial cell | 5.20e-13 | 7 |
epithelial cell | 6.39e-13 | 25 |
endo-epithelial cell | 1.15e-12 | 15 |
endodermal cell | 2.16e-09 | 20 |
M cell of gut | 5.43e-08 | 3 |
intestinal crypt stem cell | 8.73e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.82e-32 | 13 |
wall of intestine | 2.82e-32 | 13 |
gastrointestinal system mucosa | 2.82e-32 | 13 |
intestine | 2.80e-31 | 31 |
mucosa | 7.73e-28 | 15 |
epithelium of mucosa | 2.33e-21 | 9 |
gastrointestinal system epithelium | 2.33e-21 | 9 |
intestinal epithelium | 2.33e-21 | 9 |
gastrointestinal system | 5.16e-20 | 47 |
simple columnar epithelium | 2.06e-17 | 11 |
organ component layer | 5.36e-17 | 24 |
ileal mucosa | 5.01e-08 | 3 |
ileum | 5.01e-08 | 3 |
mucosa of small intestine | 5.01e-08 | 3 |
wall of small intestine | 5.01e-08 | 3 |
subdivision of digestive tract | 4.49e-07 | 114 |
digestive system | 6.46e-07 | 116 |
digestive tract | 6.46e-07 | 116 |
primitive gut | 6.46e-07 | 116 |
endoderm-derived structure | 9.20e-07 | 118 |
endoderm | 9.20e-07 | 118 |
presumptive endoderm | 9.20e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.