Personal tools

FF:11285-116I7: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008372
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000171
|is_a=EFO:0002091;;FF:0000171
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11087
|name=Smooth Muscle Cells - Carotid, donor1
|name=Smooth Muscle Cells - Carotid, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=GTF2A1,2:1.68618812167;ZNF238:1.4358384422;NFE2L1:1.35254632068;GZF1:1.2264715041;GLI1..3:1.20170416652;TLX1..3_NFIC{dimer}:1.16016550468;HIF1A:1.07574254346;IKZF1:1.07495708304;TFAP4:0.969689327549;CRX:0.959198975896;HES1:0.942868114378;HAND1,2:0.929240555066;MYBL2:0.919451723164;ALX4:0.872470587276;EBF1:0.871145772021;XCPE1{core}:0.860130293304;PATZ1:0.854464484019;ZNF148:0.850815788065;TEAD1:0.794260643141;TAL1_TCF{3,4,12}:0.788713962911;TBX4,5:0.765842562037;MTF1:0.72510595567;GFI1B:0.715862851202;PBX1:0.711481328825;ZIC1..3:0.704994015961;ZNF423:0.692343781053;LHX3,4:0.654354054451;TFAP2B:0.649087542907;ZBTB6:0.647615631273;POU3F1..4:0.645938248218;TFCP2:0.625242724992;GTF2I:0.624106816504;NANOG{mouse}:0.623498189553;HOX{A5,B5}:0.62030619294;AHR_ARNT_ARNT2:0.611708018655;PAX5:0.578330153858;SRF:0.55893654191;POU2F1..3:0.558395860791;FOS_FOS{B,L1}_JUN{B,D}:0.518277610985;TFAP2{A,C}:0.503781738733;NANOG:0.50339047801;NFE2L2:0.503294674558;TBP:0.480044668893;PRDM1:0.476668528892;HIC1:0.47584171706;NFATC1..3:0.473791146428;NKX2-2,8:0.471130753371;HMX1:0.467491399187;TP53:0.456894095084;NFIX:0.454997797754;BACH2:0.448813396373;YY1:0.43903945662;EGR1..3:0.431148776896;MTE{core}:0.418042296253;ESR1:0.416790786119;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.398489938713;bHLH_family:0.398146548545;STAT2,4,6:0.386636946664;RXR{A,B,G}:0.383442734425;EN1,2:0.374490362192;MYFfamily:0.372000270323;MZF1:0.369241918026;GCM1,2:0.368127649824;RREB1:0.366143953858;GFI1:0.352613847968;ONECUT1,2:0.352120275307;SOX17:0.342729401195;NR1H4:0.319961843031;ATF6:0.3119512466;KLF4:0.289417810175;HLF:0.287125544275;MAZ:0.286436168567;PPARG:0.28083356203;HSF1,2:0.27210862691;STAT5{A,B}:0.252049157816;SPZ1:0.251394206745;NR5A1,2:0.24248105868;AR:0.239596692295;SP1:0.236961573251;FOSL2:0.23463220602;MED-1{core}:0.226222865923;VSX1,2:0.217202457688;NR3C1:0.198530718467;CEBPA,B_DDIT3:0.193885230089;ADNP_IRX_SIX_ZHX:0.171206370654;PRRX1,2:0.152367433137;NFE2:0.146168057858;SOX{8,9,10}:0.13875431452;ESRRA:0.136659259584;LEF1_TCF7_TCF7L1,2:0.118578032812;NKX6-1,2:0.116119088708;HNF1A:0.112270607794;NHLH1,2:0.0995410092266;TLX2:0.0812580562272;TFDP1:0.0755650397765;FOX{I1,J2}:0.0677078535535;PAX3,7:0.0544177872206;RFX1:0.0540753022066;RXRA_VDR{dimer}:0.0270018667857;ELK1,4_GABP{A,B1}:0.0218393614721;XBP1:0.0118540554674;PAX1,9:0.00593304420847;GATA4:-0.0113893695899;ZNF143:-0.0211061845042;ZFP161:-0.0329331623418;MAFB:-0.033330939816;FOXL1:-0.034147814216;E2F1..5:-0.0406263691828;CDC5L:-0.0423321759582;SMAD1..7,9:-0.0732116822621;UFEwm:-0.086489868024;POU5F1:-0.0896057047745;REST:-0.0960668492113;EP300:-0.0965396043563;MEF2{A,B,C,D}:-0.116139744273;ZNF384:-0.121473734871;EVI1:-0.125325626569;POU6F1:-0.126803543798;NRF1:-0.151424140076;MYB:-0.152508707199;HBP1_HMGB_SSRP1_UBTF:-0.155916754942;NFKB1_REL_RELA:-0.15676681761;NKX3-1:-0.172666945599;NKX3-2:-0.176709140759;HOX{A4,D4}:-0.187248720097;PAX8:-0.191693078752;PAX6:-0.191981698814;HNF4A_NR2F1,2:-0.201473911464;RUNX1..3:-0.229199714409;TOPORS:-0.237653185408;FOXO1,3,4:-0.241443595864;POU1F1:-0.26425172135;JUN:-0.282211795691;ATF2:-0.283119101239;ELF1,2,4:-0.292239879996;IRF1,2:-0.294718285049;STAT1,3:-0.301915802876;GATA6:-0.31008312061;CREB1:-0.323337171759;FOXM1:-0.324900423653;ETS1,2:-0.35029130252;SOX2:-0.359122009668;DMAP1_NCOR{1,2}_SMARC:-0.391251376025;TGIF1:-0.40411518141;NFY{A,B,C}:-0.40417501709;NFIL3:-0.412677568401;SPIB:-0.414872093991;NR6A1:-0.446169134545;PAX2:-0.459218784636;HOXA9_MEIS1:-0.474510878033;SOX5:-0.477508811135;IRF7:-0.479045806133;BPTF:-0.479723223155;HOX{A6,A7,B6,B7}:-0.481377649504;SPI1:-0.52501145627;DBP:-0.552895478881;FOXQ1:-0.6712648178;ATF5_CREB3:-0.676381548734;FOX{D1,D2}:-0.677628270374;LMO2:-0.680505941141;ATF4:-0.685606401443;BREu{core}:-0.687578029977;RORA:-0.694048187319;FOXP3:-0.731290220257;CUX2:-0.731641885546;FOXD3:-0.742769409079;SREBF1,2:-0.754626324932;ALX1:-0.781586853458;FOXN1:-0.782756670006;NKX2-3_NKX2-5:-0.784436866644;ARID5B:-0.799890842329;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.806707112129;NKX2-1,4:-0.851457786128;FOXA2:-0.877159229341;RFX2..5_RFXANK_RFXAP:-0.889182644201;AIRE:-0.889644459057;PDX1:-0.890400661175;HMGA1,2:-0.937466425527;SNAI1..3:-0.945699409819;ZEB1:-0.946479240259;FOX{F1,F2,J1}:-1.01670080565;PAX4:-1.01685687724;TEF:-1.01760703613;OCT4_SOX2{dimer}:-1.04436863952;MYOD1:-1.1419747356;RBPJ:-1.18551686789;CDX1,2,4:-1.24853415385;PITX1..3:-1.27062414712;FOXP1:-1.33143505272;ZBTB16:-1.64574836118;T:-1.64775769849;IKZF2:-2.02824491428
|top_motifs=GTF2A1,2:1.68618812167;ZNF238:1.4358384422;NFE2L1:1.35254632068;GZF1:1.2264715041;GLI1..3:1.20170416652;TLX1..3_NFIC{dimer}:1.16016550468;HIF1A:1.07574254346;IKZF1:1.07495708304;TFAP4:0.969689327549;CRX:0.959198975896;HES1:0.942868114378;HAND1,2:0.929240555066;MYBL2:0.919451723164;ALX4:0.872470587276;EBF1:0.871145772021;XCPE1{core}:0.860130293304;PATZ1:0.854464484019;ZNF148:0.850815788065;TEAD1:0.794260643141;TAL1_TCF{3,4,12}:0.788713962911;TBX4,5:0.765842562037;MTF1:0.72510595567;GFI1B:0.715862851202;PBX1:0.711481328825;ZIC1..3:0.704994015961;ZNF423:0.692343781053;LHX3,4:0.654354054451;TFAP2B:0.649087542907;ZBTB6:0.647615631273;POU3F1..4:0.645938248218;TFCP2:0.625242724992;GTF2I:0.624106816504;NANOG{mouse}:0.623498189553;HOX{A5,B5}:0.62030619294;AHR_ARNT_ARNT2:0.611708018655;PAX5:0.578330153858;SRF:0.55893654191;POU2F1..3:0.558395860791;FOS_FOS{B,L1}_JUN{B,D}:0.518277610985;TFAP2{A,C}:0.503781738733;NANOG:0.50339047801;NFE2L2:0.503294674558;TBP:0.480044668893;PRDM1:0.476668528892;HIC1:0.47584171706;NFATC1..3:0.473791146428;NKX2-2,8:0.471130753371;HMX1:0.467491399187;TP53:0.456894095084;NFIX:0.454997797754;BACH2:0.448813396373;YY1:0.43903945662;EGR1..3:0.431148776896;MTE{core}:0.418042296253;ESR1:0.416790786119;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.398489938713;bHLH_family:0.398146548545;STAT2,4,6:0.386636946664;RXR{A,B,G}:0.383442734425;EN1,2:0.374490362192;MYFfamily:0.372000270323;MZF1:0.369241918026;GCM1,2:0.368127649824;RREB1:0.366143953858;GFI1:0.352613847968;ONECUT1,2:0.352120275307;SOX17:0.342729401195;NR1H4:0.319961843031;ATF6:0.3119512466;KLF4:0.289417810175;HLF:0.287125544275;MAZ:0.286436168567;PPARG:0.28083356203;HSF1,2:0.27210862691;STAT5{A,B}:0.252049157816;SPZ1:0.251394206745;NR5A1,2:0.24248105868;AR:0.239596692295;SP1:0.236961573251;FOSL2:0.23463220602;MED-1{core}:0.226222865923;VSX1,2:0.217202457688;NR3C1:0.198530718467;CEBPA,B_DDIT3:0.193885230089;ADNP_IRX_SIX_ZHX:0.171206370654;PRRX1,2:0.152367433137;NFE2:0.146168057858;SOX{8,9,10}:0.13875431452;ESRRA:0.136659259584;LEF1_TCF7_TCF7L1,2:0.118578032812;NKX6-1,2:0.116119088708;HNF1A:0.112270607794;NHLH1,2:0.0995410092266;TLX2:0.0812580562272;TFDP1:0.0755650397765;FOX{I1,J2}:0.0677078535535;PAX3,7:0.0544177872206;RFX1:0.0540753022066;RXRA_VDR{dimer}:0.0270018667857;ELK1,4_GABP{A,B1}:0.0218393614721;XBP1:0.0118540554674;PAX1,9:0.00593304420847;GATA4:-0.0113893695899;ZNF143:-0.0211061845042;ZFP161:-0.0329331623418;MAFB:-0.033330939816;FOXL1:-0.034147814216;E2F1..5:-0.0406263691828;CDC5L:-0.0423321759582;SMAD1..7,9:-0.0732116822621;UFEwm:-0.086489868024;POU5F1:-0.0896057047745;REST:-0.0960668492113;EP300:-0.0965396043563;MEF2{A,B,C,D}:-0.116139744273;ZNF384:-0.121473734871;EVI1:-0.125325626569;POU6F1:-0.126803543798;NRF1:-0.151424140076;MYB:-0.152508707199;HBP1_HMGB_SSRP1_UBTF:-0.155916754942;NFKB1_REL_RELA:-0.15676681761;NKX3-1:-0.172666945599;NKX3-2:-0.176709140759;HOX{A4,D4}:-0.187248720097;PAX8:-0.191693078752;PAX6:-0.191981698814;HNF4A_NR2F1,2:-0.201473911464;RUNX1..3:-0.229199714409;TOPORS:-0.237653185408;FOXO1,3,4:-0.241443595864;POU1F1:-0.26425172135;JUN:-0.282211795691;ATF2:-0.283119101239;ELF1,2,4:-0.292239879996;IRF1,2:-0.294718285049;STAT1,3:-0.301915802876;GATA6:-0.31008312061;CREB1:-0.323337171759;FOXM1:-0.324900423653;ETS1,2:-0.35029130252;SOX2:-0.359122009668;DMAP1_NCOR{1,2}_SMARC:-0.391251376025;TGIF1:-0.40411518141;NFY{A,B,C}:-0.40417501709;NFIL3:-0.412677568401;SPIB:-0.414872093991;NR6A1:-0.446169134545;PAX2:-0.459218784636;HOXA9_MEIS1:-0.474510878033;SOX5:-0.477508811135;IRF7:-0.479045806133;BPTF:-0.479723223155;HOX{A6,A7,B6,B7}:-0.481377649504;SPI1:-0.52501145627;DBP:-0.552895478881;FOXQ1:-0.6712648178;ATF5_CREB3:-0.676381548734;FOX{D1,D2}:-0.677628270374;LMO2:-0.680505941141;ATF4:-0.685606401443;BREu{core}:-0.687578029977;RORA:-0.694048187319;FOXP3:-0.731290220257;CUX2:-0.731641885546;FOXD3:-0.742769409079;SREBF1,2:-0.754626324932;ALX1:-0.781586853458;FOXN1:-0.782756670006;NKX2-3_NKX2-5:-0.784436866644;ARID5B:-0.799890842329;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.806707112129;NKX2-1,4:-0.851457786128;FOXA2:-0.877159229341;RFX2..5_RFXANK_RFXAP:-0.889182644201;AIRE:-0.889644459057;PDX1:-0.890400661175;HMGA1,2:-0.937466425527;SNAI1..3:-0.945699409819;ZEB1:-0.946479240259;FOX{F1,F2,J1}:-1.01670080565;PAX4:-1.01685687724;TEF:-1.01760703613;OCT4_SOX2{dimer}:-1.04436863952;MYOD1:-1.1419747356;RBPJ:-1.18551686789;CDX1,2,4:-1.24853415385;PITX1..3:-1.27062414712;FOXP1:-1.33143505272;ZBTB16:-1.64574836118;T:-1.64775769849;IKZF2:-2.02824491428
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008372
|accession_numbers=DRX008480;DRR009352;DRZ000777;DRZ002162;CAGE
|library_id=CNhs11087
}}
}}

Revision as of 18:56, 16 October 2013


Name:Smooth Muscle Cells - Carotid, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuecarotid artery
dev stageNA
sexunknown
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2435
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008372
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.202
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.221
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.638
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.214
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.413
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.344
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.371
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.534
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.413
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0244
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.291
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.507
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.509
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.291
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.291
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11087

Jaspar motifP-value
MA0002.20.723
MA0003.10.295
MA0004.10.532
MA0006.10.416
MA0007.10.209
MA0009.10.226
MA0014.10.834
MA0017.10.526
MA0018.20.0298
MA0019.10.157
MA0024.10.484
MA0025.10.521
MA0027.10.867
MA0028.10.488
MA0029.10.798
MA0030.10.892
MA0031.10.497
MA0035.20.726
MA0038.10.624
MA0039.20.88
MA0040.10.496
MA0041.10.384
MA0042.10.572
MA0043.10.222
MA0046.10.281
MA0047.20.886
MA0048.10.242
MA0050.10.19
MA0051.10.826
MA0052.10.354
MA0055.10.675
MA0057.10.426
MA0058.10.339
MA0059.10.483
MA0060.10.262
MA0061.10.816
MA0062.20.00511
MA0065.20.0661
MA0066.10.804
MA0067.10.104
MA0068.10.281
MA0069.10.695
MA0070.10.731
MA0071.10.952
MA0072.10.773
MA0073.10.884
MA0074.10.393
MA0076.10.454
MA0077.10.69
MA0078.10.799
MA0079.20.199
MA0080.21.24228e-5
MA0081.10.264
MA0083.10.00962
MA0084.10.664
MA0087.10.704
MA0088.10.528
MA0090.10.00274
MA0091.10.267
MA0092.10.524
MA0093.10.586
MA0099.22.69868e-9
MA0100.10.16
MA0101.10.537
MA0102.20.347
MA0103.10.00133
MA0104.20.246
MA0105.10.508
MA0106.10.587
MA0107.10.83
MA0108.26.71568e-7
MA0111.10.0176
MA0112.20.668
MA0113.10.608
MA0114.10.17
MA0115.10.743
MA0116.10.613
MA0117.10.528
MA0119.10.472
MA0122.10.708
MA0124.10.841
MA0125.10.756
MA0131.10.84
MA0135.10.37
MA0136.13.45129e-4
MA0137.20.298
MA0138.20.665
MA0139.10.663
MA0140.10.588
MA0141.10.77
MA0142.10.57
MA0143.10.347
MA0144.10.995
MA0145.10.485
MA0146.10.207
MA0147.10.403
MA0148.11
MA0149.10.655
MA0150.10.258
MA0152.10.468
MA0153.10.166
MA0154.10.947
MA0155.10.224
MA0156.10.00594
MA0157.10.557
MA0159.10.39
MA0160.10.53
MA0162.10.237
MA0163.10.382
MA0164.10.436
MA0258.10.775
MA0259.10.938



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11087

Novel motifP-value
10.131
100.0811
1000.327
1010.0949
1020.15
1030.884
1040.236
1050.734
1060.757
1070.284
1080.465
1090.665
110.816
1100.607
1110.0026
1120.361
1130.0086
1140.491
1150.906
1160.0623
1170.435
1180.25
1190.084
120.437
1200.977
1210.695
1220.846
1230.00349
1240.857
1250.498
1260.549
1270.656
1280.856
1290.403
130.147
1300.0241
1310.382
1320.64
1330.152
1340.267
1350.832
1360.413
1370.122
1380.273
1390.445
140.63
1400.0289
1410.0481
1420.916
1430.373
1440.447
1450.487
1460.143
1470.226
1480.0273
1490.156
150.477
1500.412
1510.801
1520.0541
1530.527
1540.536
1550.0712
1560.769
1570.493
1580.00139
1590.299
160.627
1600.625
1610.867
1620.809
1630.963
1640.824
1650.53
1660.66
1670.155
1680.598
1690.215
170.795
180.405
190.253
20.135
200.221
210.589
220.237
230.865
240.511
250.0786
260.561
270.691
280.0473
290.731
30.495
300.0685
310.863
320.00107
330.954
340.261
350.713
360.139
370.878
380.43
390.281
40.61
400.452
410.476
420.772
430.797
440.297
450.329
460.857
470.731
480.832
490.131
50.841
500.371
510.944
520.96
530.187
540.976
550.588
560.69
570.627
580.176
590.232
60.635
600.498
610.384
620.208
630.868
640.722
650.726
660.804
670.776
680.0538
690.642
70.187
700.983
710.523
720.523
730.03
740.836
750.988
760.476
770.126
780.0796
790.196
80.763
800.584
810.401
820.485
830.576
840.718
850.929
860.919
870.0294
880.125
890.248
90.154
900.13
910.965
920.858
930.485
940.451
950.928
960.196
970.611
980.444
990.00564



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11087


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002596 (smooth muscle cell of the carotid artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005396 (carotid artery segment)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000171 (human smooth muscle cell of the carotid artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11285-116I7&oldid=3076700"