FFCP PHASE1:Hg19::chr1:59165724..59165751,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114803 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29401 | |||
|TSSclassifier=strong | |||
|UniProt=Q5VVJ2 | |||
|association_with_transcript=0bp_to_ENST00000466774,ENST00000483003,ENST00000489282,NM_001085487,uc001czd.2,uc009wab.1_5end | |||
|description=CAGE_peak_1_at_MYSM1_5end | |||
|id=chr1:59165724..59165751,- | |||
|ontology_enrichment_celltype=CL:0000037!5.38e-25!172;CL:0000566!5.38e-25!172;CL:0000738!8.40e-23!140;CL:0002032!1.35e-22!165;CL:0000837!1.35e-22!165;CL:0000988!3.67e-22!182;CL:0002031!6.89e-17!124;CL:0002087!3.80e-16!119;CL:0000763!4.23e-12!112;CL:0000049!4.23e-12!112;CL:0000838!5.33e-11!52;CL:0000542!9.21e-11!53;CL:0000051!9.21e-11!53;CL:0000766!3.91e-09!76;CL:0000791!1.79e-08!18;CL:0000789!1.79e-08!18;CL:0002420!1.79e-08!18;CL:0002419!1.79e-08!18;CL:0000790!1.79e-08!18;CL:0002057!8.24e-08!42;CL:0000557!1.89e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.78e-08;18!CL:0000789;1.78e-08;18!CL:0002419;1.78e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.44e-27,168;CL:0000738,1.08e-24,136;CL:0002032,2.76e-24,161;CL:0000837,2.76e-24,161;CL:0000988,4.81e-24,177;CL:0002031,1.47e-18,120;CL:0002087,8.20e-18,115;CL:0000763,1.60e-13,108;CL:0000049,1.60e-13,108;CL:0000838,5.33e-11,52;CL:0000542,9.21e-11,53;CL:0000051,9.21e-11,53;CL:0000766,1.22e-10,72;CL:0000557,8.29e-09,67;CL:0000791,1.79e-08,18;CL:0000789,1.79e-08,18;CL:0002420,1.79e-08,18;CL:0002419,1.79e-08,18;CL:0000790,1.79e-08,18;CL:0000860,8.24e-08,42;CL:0002057,8.24e-08,42;CL:0000839,9.17e-08,66;CL:0002009,1.19e-07,61;CL:0002194,5.76e-07,59;CL:0000576,5.76e-07,59;CL:0000040,5.76e-07,59;CL:0000559,5.76e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000790;1.78e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.33e-12!115;UBERON:0002780!1.82e-09!41;UBERON:0001890!1.82e-09!41;UBERON:0006240!1.82e-09!41;UBERON:0001049!3.95e-09!57;UBERON:0005068!3.95e-09!57;UBERON:0006241!3.95e-09!57;UBERON:0007135!3.95e-09!57;UBERON:0003080!5.85e-09!42;UBERON:0002390!1.18e-08!102;UBERON:0003061!1.18e-08!102;UBERON:0001017!3.45e-08!82;UBERON:0000955!9.14e-08!69;UBERON:0006238!9.14e-08!69;UBERON:0001893!1.03e-07!34;UBERON:0002616!1.40e-07!59;UBERON:0002020!1.82e-07!34;UBERON:0003528!1.82e-07!34;UBERON:0001869!2.05e-07!32;UBERON:0000073!2.13e-07!94;UBERON:0001016!2.13e-07!94;UBERON:0005743!2.28e-07!86;UBERON:0002791!2.62e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.12e-07;41!UBERON:0001890;7.12e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.01e-12,114;UBERON:0002390,7.52e-10,98;UBERON:0003061,7.52e-10,98;UBERON:0001049,1.50e-09,56;UBERON:0005068,1.50e-09,56;UBERON:0006241,1.50e-09,56;UBERON:0007135,1.50e-09,56;UBERON:0002780,1.82e-09,41;UBERON:0001890,1.82e-09,41;UBERON:0003080,1.82e-09,41;UBERON:0006240,1.82e-09,41;UBERON:0000073,3.53e-09,53;UBERON:0002616,3.53e-09,53;UBERON:0001017,1.71e-08,81;UBERON:0001016,1.88e-08,89;UBERON:0000955,4.32e-08,68;UBERON:0006238,4.32e-08,68;UBERON:0001893,1.03e-07,34;UBERON:0002193,1.20e-07,108;UBERON:0003528,1.82e-07,34;UBERON:0002020,1.82e-07,34;UBERON:0001869,2.05e-07,32;UBERON:0002791,3.10e-07,32;UBERON:0001474,3.36e-07,82 | |||
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| |||
|short_description=p1@MYSM1 | |||
}} |
Revision as of 18:42, 10 January 2014
Short description: | p1@MYSM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MYSM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000466774, ENST00000483003, ENST00000489282, NM_001085487, uc001czd.2, uc009wab.1_5end |
EntrezGene: | MYSM1 |
HGNC: | 29401 |
UniProt: | Q5VVJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.44e-27 | 168 |
leukocyte | 1.08e-24 | 136 |
hematopoietic oligopotent progenitor cell | 2.76e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.76e-24 | 161 |
hematopoietic cell | 4.81e-24 | 177 |
hematopoietic lineage restricted progenitor cell | 1.47e-18 | 120 |
nongranular leukocyte | 8.20e-18 | 115 |
myeloid cell | 1.60e-13 | 108 |
common myeloid progenitor | 1.60e-13 | 108 |
lymphoid lineage restricted progenitor cell | 5.33e-11 | 52 |
lymphocyte | 9.21e-11 | 53 |
common lymphoid progenitor | 9.21e-11 | 53 |
myeloid leukocyte | 1.22e-10 | 72 |
granulocyte monocyte progenitor cell | 8.29e-09 | 67 |
mature alpha-beta T cell | 1.79e-08 | 18 |
alpha-beta T cell | 1.79e-08 | 18 |
immature T cell | 1.79e-08 | 18 |
mature T cell | 1.79e-08 | 18 |
immature alpha-beta T cell | 1.79e-08 | 18 |
classical monocyte | 8.24e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.24e-08 | 42 |
myeloid lineage restricted progenitor cell | 9.17e-08 | 66 |
macrophage dendritic cell progenitor | 1.19e-07 | 61 |
monopoietic cell | 5.76e-07 | 59 |
monocyte | 5.76e-07 | 59 |
monoblast | 5.76e-07 | 59 |
promonocyte | 5.76e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.01e-12 | 114 |
hematopoietic system | 7.52e-10 | 98 |
blood island | 7.52e-10 | 98 |
neural tube | 1.50e-09 | 56 |
neural rod | 1.50e-09 | 56 |
future spinal cord | 1.50e-09 | 56 |
neural keel | 1.50e-09 | 56 |
regional part of forebrain | 1.82e-09 | 41 |
forebrain | 1.82e-09 | 41 |
anterior neural tube | 1.82e-09 | 41 |
future forebrain | 1.82e-09 | 41 |
regional part of nervous system | 3.53e-09 | 53 |
regional part of brain | 3.53e-09 | 53 |
central nervous system | 1.71e-08 | 81 |
nervous system | 1.88e-08 | 89 |
brain | 4.32e-08 | 68 |
future brain | 4.32e-08 | 68 |
telencephalon | 1.03e-07 | 34 |
hemolymphoid system | 1.20e-07 | 108 |
brain grey matter | 1.82e-07 | 34 |
gray matter | 1.82e-07 | 34 |
cerebral hemisphere | 2.05e-07 | 32 |
regional part of telencephalon | 3.10e-07 | 32 |
bone element | 3.36e-07 | 82 |