FFCP PHASE1:Hg19::chr20:19716226..19716237,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr20:19716226..19716237,- | |||
|id=chr20:19716226..19716237,- | |||
|ontology_enrichment_celltype=CL:0002057!5.86e-63!42;CL:0000860!3.18e-58!45;CL:0002194!2.54e-44!63;CL:0000576!2.54e-44!63;CL:0000040!2.54e-44!63;CL:0000559!2.54e-44!63;CL:0002009!1.01e-42!65;CL:0000839!6.57e-42!70;CL:0000557!1.85e-38!71;CL:0000766!6.55e-38!76;CL:0000763!7.76e-25!112;CL:0000049!7.76e-25!112;CL:0002087!1.80e-24!119;CL:0002031!4.19e-23!124;CL:0000738!6.49e-21!140;CL:0000037!1.45e-16!172;CL:0000566!1.45e-16!172;CL:0002032!2.13e-16!165;CL:0000837!2.13e-16!165;CL:0000988!3.62e-15!182;CL:0002393!1.61e-09!9;CL:0002397!1.61e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-27;33!CL:0002057;1.27e-27;33!CL:0002393;2.53e-25;6!CL:0002397;2.53e-25;6!CL:0000576;1.60e-22;48!CL:0000473;1.14e-20;39!CL:0000234;1.14e-20;39!CL:0002591;1.33e-17;1!CL:0000766;1.28e-16;69!CL:0002087;1.94e-08;104!CL:0000763;5.75e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.15e-46,42;CL:0002057,1.15e-46,42;CL:0000473,9.28e-41,48;CL:0000234,9.28e-41,48;CL:0002194,1.75e-32,59;CL:0000576,1.75e-32,59;CL:0000040,1.75e-32,59;CL:0000559,1.75e-32,59;CL:0002009,2.05e-31,61;CL:0000839,5.09e-29,66;CL:0000557,1.39e-28,67;CL:0000766,1.41e-26,72;CL:0002591,1.44e-17,1;CL:0000763,1.50e-17,108;CL:0000049,1.50e-17,108;CL:0002393,3.74e-17,9;CL:0002397,3.74e-17,9;CL:0002087,1.92e-16,115;CL:0002031,9.94e-16,120;CL:0000738,8.59e-14,136;CL:0002032,1.59e-11,161;CL:0000837,1.59e-11,161;CL:0000037,5.20e-11,168;CL:0000988,2.09e-10,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.01e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.97e-33!80;UBERON:0001474!2.20e-30!86;UBERON:0002390!4.66e-28!102;UBERON:0003061!4.66e-28!102;UBERON:0004765!1.50e-26!101;UBERON:0001434!1.50e-26!101;UBERON:0002193!8.35e-25!112;UBERON:0002405!3.09e-22!115;UBERON:0002204!1.14e-18!167;UBERON:0003081!2.24e-12!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;1.78e-09;2!UBERON:0002012;1.78e-09;2!UBERON:0008886;1.78e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.68e-25,76;UBERON:0001474,2.73e-23,82;UBERON:0004765,3.55e-21,90;UBERON:0002405,1.78e-20,93;UBERON:0002390,2.10e-19,98;UBERON:0003061,2.10e-19,98;UBERON:0001434,5.28e-19,100;UBERON:0002193,1.50e-17,108;UBERON:0002204,2.60e-13,167;UBERON:0003081,8.49e-11,203;UBERON:0000078,1.86e-09,2;UBERON:0007497,1.86e-09,2;UBERON:0003643,1.86e-09,2;UBERON:0003504,1.86e-09,2;UBERON:0003469,1.86e-09,2;UBERON:0003496,1.86e-09,2;UBERON:0002012,1.86e-09,2;UBERON:0008886,1.86e-09,2;UBERON:0007303,1.86e-09,2;UBERON:0002061,1.86e-09,2;UBERON:0005432,1.86e-09,2;UBERON:0004363,1.86e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,0,4.9859586767869,3.00816671205213,1.73608696572681,0,0,0,0.436194716338694,0,0.242584061187816,0.464858073811369,0,0,0.28769239232215,0.512321413058201,0.47296445977717,10.3423704220986,3.87290810150296,2.70852973188684,0,0,0.674170453335254,11.6311879100943,5.1348644332175,8.31138263538754,0,0.199463657621632,0,0.290209238628584,0.56738522469114,0.622822248995575,1.25624332628372,0.521482918420201,0.65156653411535,0.605399502633369,1.10483290796269,0,0,0.212604299965044,0.209658645508376,0.336985893439485,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:19716226..19716237,- | |||
}} |
Revision as of 10:25, 21 January 2014
Short description: | p@chr20:19716226..19716237, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:19716226..19716237, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.15e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-46 | 42 |
defensive cell | 9.28e-41 | 48 |
phagocyte | 9.28e-41 | 48 |
monopoietic cell | 1.75e-32 | 59 |
monocyte | 1.75e-32 | 59 |
monoblast | 1.75e-32 | 59 |
promonocyte | 1.75e-32 | 59 |
macrophage dendritic cell progenitor | 2.05e-31 | 61 |
myeloid lineage restricted progenitor cell | 5.09e-29 | 66 |
granulocyte monocyte progenitor cell | 1.39e-28 | 67 |
myeloid leukocyte | 1.41e-26 | 72 |
smooth muscle cell of the pulmonary artery | 1.44e-17 | 1 |
myeloid cell | 1.50e-17 | 108 |
common myeloid progenitor | 1.50e-17 | 108 |
intermediate monocyte | 3.74e-17 | 9 |
CD14-positive, CD16-positive monocyte | 3.74e-17 | 9 |
nongranular leukocyte | 1.92e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 9.94e-16 | 120 |
leukocyte | 8.59e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.59e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-11 | 161 |
hematopoietic stem cell | 5.20e-11 | 168 |
hematopoietic cell | 2.09e-10 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.68e-25 | 76 |
bone element | 2.73e-23 | 82 |
skeletal element | 3.55e-21 | 90 |
immune system | 1.78e-20 | 93 |
hematopoietic system | 2.10e-19 | 98 |
blood island | 2.10e-19 | 98 |
skeletal system | 5.28e-19 | 100 |
hemolymphoid system | 1.50e-17 | 108 |
musculoskeletal system | 2.60e-13 | 167 |
lateral plate mesoderm | 8.49e-11 | 203 |
mixed ectoderm/mesoderm/endoderm-derived structure | 1.86e-09 | 2 |
developing epithelial placode | 1.86e-09 | 2 |
respiratory system arterial blood vessel | 1.86e-09 | 2 |
respiratory system blood vessel | 1.86e-09 | 2 |
respiratory system artery | 1.86e-09 | 2 |
head blood vessel | 1.86e-09 | 2 |
pulmonary artery | 1.86e-09 | 2 |
pulmonary vascular system | 1.86e-09 | 2 |
pharyngeal vasculature | 1.86e-09 | 2 |
truncus arteriosus | 1.86e-09 | 2 |
aortic sac | 1.86e-09 | 2 |
pharyngeal arch artery | 1.86e-09 | 2 |