FFCP PHASE1:Hg19::chr10:20506553..20506556,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:20506553..20506556,+ | |||
|description=CAGE_peak_at_chr10:20506553..20506556,+ | |description=CAGE_peak_at_chr10:20506553..20506556,+ | ||
|id=chr10:20506553..20506556,+ | |id=chr10:20506553..20506556,+ | ||
|ontology_enrichment_celltype=CL:0002057!5.39e-23!42;CL:0002194!7.19e-22!63;CL:0000576!7.19e-22!63;CL:0000040!7.19e-22!63;CL:0000559!7.19e-22!63;CL:0002009!8.65e-21!65;CL:0000860!1.02e-20!45;CL:0000839!1.61e-19!70;CL:0000766!2.93e-19!76;CL:0000557!4.68e-19!71;CL:0000763!1.62e-11!112;CL:0000049!1.62e-11!112;CL:0002087!5.71e-09!119;CL:0000738!1.96e-07!140;CL:0002031!5.84e-07!124 | |ontology_enrichment_celltype=CL:0002057!5.39e-23!42;CL:0002194!7.19e-22!63;CL:0000576!7.19e-22!63;CL:0000040!7.19e-22!63;CL:0000559!7.19e-22!63;CL:0002009!8.65e-21!65;CL:0000860!1.02e-20!45;CL:0000839!1.61e-19!70;CL:0000766!2.93e-19!76;CL:0000557!4.68e-19!71;CL:0000763!1.62e-11!112;CL:0000049!1.62e-11!112;CL:0002087!5.71e-09!119;CL:0000738!1.96e-07!140;CL:0002031!5.84e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.22e-56;33!CL:0002057;7.22e-56;33!CL:0000473;1.73e-43;39!CL:0000234;1.73e-43;39!CL:0000576;1.29e-31;48!CL:0000766;6.83e-16;69!CL:0000763;1.88e-09;100!CL:0002087;4.52e-08;104!CL:0000738;3.79e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.65e-54,42;CL:0002057,4.65e-54,42;CL:0000473,5.23e-52,48;CL:0000234,5.23e-52,48;CL:0002194,9.54e-41,59;CL:0000576,9.54e-41,59;CL:0000040,9.54e-41,59;CL:0000559,9.54e-41,59;CL:0002009,2.71e-39,61;CL:0000766,2.92e-36,72;CL:0000839,4.87e-36,66;CL:0000557,1.91e-35,67;CL:0000763,8.59e-23,108;CL:0000049,8.59e-23,108;CL:0002087,4.43e-21,115;CL:0000738,4.60e-19,136;CL:0002031,5.15e-18,120;CL:0000037,1.46e-14,168;CL:0002032,7.53e-14,161;CL:0000837,7.53e-14,161;CL:0000988,1.38e-13,177 | |||
|ontology_enrichment_development_v019=CL:0002057;8.98e-37;42!CL:0000049;5.39e-11;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.64e-18!115;UBERON:0001049!2.72e-16!57;UBERON:0005068!2.72e-16!57;UBERON:0006241!2.72e-16!57;UBERON:0007135!2.72e-16!57;UBERON:0002371!1.90e-15!80;UBERON:0001017!3.79e-14!82;UBERON:0002390!3.97e-14!102;UBERON:0003061!3.97e-14!102;UBERON:0002346!5.18e-14!90;UBERON:0001474!1.71e-13!86;UBERON:0000955!2.04e-13!69;UBERON:0006238!2.04e-13!69;UBERON:0005743!6.22e-13!86;UBERON:0002780!1.03e-12!41;UBERON:0001890!1.03e-12!41;UBERON:0006240!1.03e-12!41;UBERON:0002020!1.57e-12!34;UBERON:0003528!1.57e-12!34;UBERON:0003075!1.77e-12!86;UBERON:0007284!1.77e-12!86;UBERON:0001893!2.59e-12!34;UBERON:0003080!3.11e-12!42;UBERON:0002616!5.81e-12!59;UBERON:0002791!9.89e-12!33;UBERON:0002193!1.21e-11!112;UBERON:0001869!1.01e-10!32;UBERON:0000073!1.31e-10!94;UBERON:0001016!1.31e-10!94;UBERON:0004765!1.92e-10!101;UBERON:0001434!1.92e-10!101;UBERON:0003056!3.16e-08!61;UBERON:0002308!9.81e-08!9;UBERON:0000125!9.81e-08!9;UBERON:0002405!1.08e-07!115;UBERON:0000062!1.22e-07!511;UBERON:0002619!1.55e-07!22;UBERON:0001950!3.54e-07!20;UBERON:0000956!3.62e-07!25;UBERON:0000203!3.62e-07!25;UBERON:0000922!5.82e-07!612 | |ontology_enrichment_uberon=UBERON:0007023!5.64e-18!115;UBERON:0001049!2.72e-16!57;UBERON:0005068!2.72e-16!57;UBERON:0006241!2.72e-16!57;UBERON:0007135!2.72e-16!57;UBERON:0002371!1.90e-15!80;UBERON:0001017!3.79e-14!82;UBERON:0002390!3.97e-14!102;UBERON:0003061!3.97e-14!102;UBERON:0002346!5.18e-14!90;UBERON:0001474!1.71e-13!86;UBERON:0000955!2.04e-13!69;UBERON:0006238!2.04e-13!69;UBERON:0005743!6.22e-13!86;UBERON:0002780!1.03e-12!41;UBERON:0001890!1.03e-12!41;UBERON:0006240!1.03e-12!41;UBERON:0002020!1.57e-12!34;UBERON:0003528!1.57e-12!34;UBERON:0003075!1.77e-12!86;UBERON:0007284!1.77e-12!86;UBERON:0001893!2.59e-12!34;UBERON:0003080!3.11e-12!42;UBERON:0002616!5.81e-12!59;UBERON:0002791!9.89e-12!33;UBERON:0002193!1.21e-11!112;UBERON:0001869!1.01e-10!32;UBERON:0000073!1.31e-10!94;UBERON:0001016!1.31e-10!94;UBERON:0004765!1.92e-10!101;UBERON:0001434!1.92e-10!101;UBERON:0003056!3.16e-08!61;UBERON:0002308!9.81e-08!9;UBERON:0000125!9.81e-08!9;UBERON:0002405!1.08e-07!115;UBERON:0000062!1.22e-07!511;UBERON:0002619!1.55e-07!22;UBERON:0001950!3.54e-07!20;UBERON:0000956!3.62e-07!25;UBERON:0000203!3.62e-07!25;UBERON:0000922!5.82e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0002038;2.42e-07;1!UBERON:0002171;2.42e-07;1!UBERON:0009661;2.42e-07;1!UBERON:0006518;2.42e-07;1!UBERON:0008949;2.42e-07;1!UBERON:0002950;2.42e-07;1!UBERON:0000101;2.42e-07;1!UBERON:0001891;2.42e-07;1!UBERON:0002167;2.42e-07;1!UBERON:0002784;6.25e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.53e-31,76;UBERON:0001474,2.96e-28,82;UBERON:0002390,1.77e-25,98;UBERON:0003061,1.77e-25,98;UBERON:0004765,2.17e-25,90;UBERON:0002405,1.93e-24,93;UBERON:0002193,1.00e-22,108;UBERON:0001434,1.91e-22,100;UBERON:0002204,9.28e-12,167;UBERON:0003081,4.93e-10,203;UBERON:0002171,1.42e-07,1;UBERON:0006518,1.42e-07,1;UBERON:0008949,1.42e-07,1;UBERON:0000101,1.42e-07,1;UBERON:0002167,1.42e-07,1;UBERON:0002038,2.35e-07,1;UBERON:0009661,2.35e-07,1;UBERON:0002950,2.35e-07,1;UBERON:0001891,2.35e-07,1;UBERON:0009616,2.35e-07,1;UBERON:0010286,2.35e-07,1 | |||
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| ||
|short_description=p@chr10:20506553..20506556,+ | |short_description=p@chr10:20506553..20506556,+ | ||
}} | }} |
Latest revision as of 12:29, 23 July 2015
Short description: | p@chr10:20506553..20506556, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:20506553..20506556, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.65e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-54 | 42 |
defensive cell | 5.23e-52 | 48 |
phagocyte | 5.23e-52 | 48 |
monopoietic cell | 9.54e-41 | 59 |
monocyte | 9.54e-41 | 59 |
monoblast | 9.54e-41 | 59 |
promonocyte | 9.54e-41 | 59 |
macrophage dendritic cell progenitor | 2.71e-39 | 61 |
myeloid leukocyte | 2.92e-36 | 72 |
myeloid lineage restricted progenitor cell | 4.87e-36 | 66 |
granulocyte monocyte progenitor cell | 1.91e-35 | 67 |
myeloid cell | 8.59e-23 | 108 |
common myeloid progenitor | 8.59e-23 | 108 |
nongranular leukocyte | 4.43e-21 | 115 |
leukocyte | 4.60e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 5.15e-18 | 120 |
hematopoietic stem cell | 1.46e-14 | 168 |
hematopoietic oligopotent progenitor cell | 7.53e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.53e-14 | 161 |
hematopoietic cell | 1.38e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.53e-31 | 76 |
bone element | 2.96e-28 | 82 |
hematopoietic system | 1.77e-25 | 98 |
blood island | 1.77e-25 | 98 |
skeletal element | 2.17e-25 | 90 |
immune system | 1.93e-24 | 93 |
hemolymphoid system | 1.00e-22 | 108 |
skeletal system | 1.91e-22 | 100 |
musculoskeletal system | 9.28e-12 | 167 |
lateral plate mesoderm | 4.93e-10 | 203 |
lower lobe of right lung | 1.42e-07 | 1 |
right lung lobe | 1.42e-07 | 1 |
lower lobe of lung | 1.42e-07 | 1 |
lobe of lung | 1.42e-07 | 1 |
right lung | 1.42e-07 | 1 |
substantia nigra | 2.35e-07 | 1 |
midbrain nucleus | 2.35e-07 | 1 |
regional part of midbrain | 2.35e-07 | 1 |
midbrain | 2.35e-07 | 1 |
presumptive midbrain | 2.35e-07 | 1 |
midbrain neural tube | 2.35e-07 | 1 |