FFCP PHASE1:Hg19::chr12:113344634..113344654,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:113344634..113344654,- | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_at_chr12:113344634..113344654,- | |description=CAGE_peak_at_chr12:113344634..113344654,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000860!2.09e-35!45;CL:0002057!1.16e-31!42;CL:0002194!7.38e-28!63;CL:0000576!7.38e-28!63;CL:0000040!7.38e-28!63;CL:0000559!7.38e-28!63;CL:0002009!1.32e-26!65;CL:0000839!3.24e-25!70;CL:0000557!1.12e-24!71;CL:0000766!1.20e-23!76;CL:0002087!1.34e-18!119;CL:0002031!3.06e-17!124;CL:0000763!2.90e-16!112;CL:0000049!2.90e-16!112;CL:0000738!5.06e-16!140;CL:0002032!2.16e-13!165;CL:0000837!2.16e-13!165;CL:0000037!6.82e-13!172;CL:0000566!6.82e-13!172;CL:0000988!6.53e-12!182;CL:0002393!7.21e-07!9;CL:0002397!7.21e-07!9 | |ontology_enrichment_celltype=CL:0000860!2.09e-35!45;CL:0002057!1.16e-31!42;CL:0002194!7.38e-28!63;CL:0000576!7.38e-28!63;CL:0000040!7.38e-28!63;CL:0000559!7.38e-28!63;CL:0002009!1.32e-26!65;CL:0000839!3.24e-25!70;CL:0000557!1.12e-24!71;CL:0000766!1.20e-23!76;CL:0002087!1.34e-18!119;CL:0002031!3.06e-17!124;CL:0000763!2.90e-16!112;CL:0000049!2.90e-16!112;CL:0000738!5.06e-16!140;CL:0002032!2.16e-13!165;CL:0000837!2.16e-13!165;CL:0000037!6.82e-13!172;CL:0000566!6.82e-13!172;CL:0000988!6.53e-12!182;CL:0002393!7.21e-07!9;CL:0002397!7.21e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.20e-38;33!CL:0002057;2.20e-38;33!CL:0000473;1.31e-25;39!CL:0000234;1.31e-25;39!CL:0000576;1.91e-16;48!CL:0000766;3.22e-10;69!CL:0002087;6.38e-10;104!CL:0000763;1.51e-08;100 | |ontology_enrichment_celltype_v019=CL:0000860;2.20e-38;33!CL:0002057;2.20e-38;33!CL:0000473;1.31e-25;39!CL:0000234;1.31e-25;39!CL:0000576;1.91e-16;48!CL:0000766;3.22e-10;69!CL:0002087;6.38e-10;104!CL:0000763;1.51e-08;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.08e-34,42;CL:0002057,1.08e-34,42;CL:0000473,3.74e-30,48;CL:0000234,3.74e-30,48;CL:0002194,8.65e-24,59;CL:0000576,8.65e-24,59;CL:0000040,8.65e-24,59;CL:0000559,8.65e-24,59;CL:0002009,5.74e-23,61;CL:0000839,3.98e-21,66;CL:0000557,8.63e-21,67;CL:0000766,3.01e-19,72;CL:0002087,7.97e-16,115;CL:0002031,4.38e-15,120;CL:0000738,4.44e-13,136;CL:0000763,2.62e-12,108;CL:0000049,2.62e-12,108;CL:0002032,9.86e-11,161;CL:0000837,9.86e-11,161;CL:0000037,3.37e-10,168;CL:0000988,1.42e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;4.22e-23;42!UBERON:0005425;1.19e-11;1 | |ontology_enrichment_development_v019=CL:0002057;4.22e-23;42!UBERON:0005425;1.19e-11;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4960;1.19e-11;1!DOID:0070004;1.19e-11;1 | |ontology_enrichment_disease_v019=DOID:4960;1.19e-11;1!DOID:0070004;1.19e-11;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4960,1.32e-11,1;DOID:0070004,1.32e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!6.66e-22!80;UBERON:0002193!4.44e-20!112;UBERON:0001474!1.83e-19!86;UBERON:0002405!3.95e-19!115;UBERON:0002390!4.98e-19!102;UBERON:0003061!4.98e-19!102;UBERON:0004765!1.47e-17!101;UBERON:0001434!1.47e-17!101;UBERON:0001737!1.74e-09!9;UBERON:0002204!1.80e-07!167;UBERON:0003081!3.51e-07!216 | |ontology_enrichment_uberon=UBERON:0002371!6.66e-22!80;UBERON:0002193!4.44e-20!112;UBERON:0001474!1.83e-19!86;UBERON:0002405!3.95e-19!115;UBERON:0002390!4.98e-19!102;UBERON:0003061!4.98e-19!102;UBERON:0004765!1.47e-17!101;UBERON:0001434!1.47e-17!101;UBERON:0001737!1.74e-09!9;UBERON:0002204!1.80e-07!167;UBERON:0003081!3.51e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.19e-11;1!UBERON:0001785;1.19e-11;1!UBERON:0002464;1.19e-11;1!UBERON:0004904;1.19e-11;1!UBERON:0001021;1.19e-11;1 | |ontology_enrichment_uberon_v019=UBERON:0000941;1.19e-11;1!UBERON:0001785;1.19e-11;1!UBERON:0002464;1.19e-11;1!UBERON:0004904;1.19e-11;1!UBERON:0001021;1.19e-11;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.22e-21,76;UBERON:0001474,1.07e-19,82;UBERON:0004765,8.44e-18,90;UBERON:0002405,3.59e-17,93;UBERON:0002390,3.31e-16,98;UBERON:0003061,3.31e-16,98;UBERON:0001434,7.56e-16,100;UBERON:0002193,1.52e-14,108;UBERON:0000941,1.19e-11,1;UBERON:0001785,1.19e-11,1;UBERON:0002464,1.19e-11,1;UBERON:0004904,1.19e-11,1;UBERON:0001021,1.19e-11,1;UBERON:0003902,1.19e-11,1;UBERON:0005425,1.19e-11,1;UBERON:0002204,2.82e-10,167;UBERON:0003081,4.43e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.764134057479513,0.656804715599566,1.18066171970519,0,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0.671746422719773,0.647787332037959,0.515151135268373,0.290796477559129,0.377875943688809,0,0.232429036905685,0,0,0.575384784644301,0.512321413058201,2.36482229888585,1.72372840368309,0.645484683583826,0,0,0,0.674170453335254,17.4467818651414,8.34415470397843,6.39337125799041,1.9791078011203,0.797854630486527,0.852449501065388,24.9579945220582,7.94339314567596,4.35975574296902,0.502497330513487,0.521482918420201,0.868755378820466,19.9781835869012,18.7821594353658,30.063926806884,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.68152568894461,0,0.196709770113833,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.354920400119532,0.337169380156203,0,0.330881918197182,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.190254152234598,0.790204397959275,0,0.246217006087397,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,1.17217447210047,0,0,0.600686115687835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23213432070436,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.580537987734511,0.292357268344742,0.410577285266046,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.202210631562555,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0.828478110694391,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.489473409012935,0,0.308801447160972,0,0.176689145945881,0,0.675769762612291,0,0,0.303859956177382,0,0,0.132864840313363,0,0,0,0,0,0,1.37771983728653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.0657727735628491,0,0.111231401892069,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0.199882311849858,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0.12729431655633,0,0,0,0.134704106029175,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0.764134057479513,0.656804715599566,1.18066171970519,0,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,0,0.671746422719773,0.647787332037959,0.515151135268373,0.290796477559129,0.377875943688809,0,0.232429036905685,0,0,0.575384784644301,0.512321413058201,2.36482229888585,1.72372840368309,0.645484683583826,0,0,0,0.674170453335254,17.4467818651414,8.34415470397843,6.39337125799041,1.9791078011203,0.797854630486527,0.852449501065388,24.9579945220582,7.94339314567596,4.35975574296902,0.502497330513487,0.521482918420201,0.868755378820466,19.9781835869012,18.7821594353658,30.063926806884,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.68152568894461,0,0.196709770113833,0,0,0,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.354920400119532,0.337169380156203,0,0.330881918197182,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.190254152234598,0.790204397959275,0,0.246217006087397,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,1.17217447210047,0,0,0.600686115687835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23213432070436,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0.580537987734511,0.292357268344742,0.410577285266046,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.202210631562555,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0.828478110694391,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.489473409012935,0,0.308801447160972,0,0.176689145945881,0,0.675769762612291,0,0,0.303859956177382,0,0,0.132864840313363,0,0,0,0,0,0,1.37771983728653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.0657727735628491,0,0.111231401892069,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0.199882311849858,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0.12729431655633,0,0,0,0.134704106029175,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:113344634..113344654,- | |short_description=p@chr12:113344634..113344654,- | ||
}} | }} |
Latest revision as of 05:08, 24 July 2015
Short description: | p@chr12:113344634..113344654, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:113344634..113344654, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.08e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.08e-34 | 42 |
defensive cell | 3.74e-30 | 48 |
phagocyte | 3.74e-30 | 48 |
monopoietic cell | 8.65e-24 | 59 |
monocyte | 8.65e-24 | 59 |
monoblast | 8.65e-24 | 59 |
promonocyte | 8.65e-24 | 59 |
macrophage dendritic cell progenitor | 5.74e-23 | 61 |
myeloid lineage restricted progenitor cell | 3.98e-21 | 66 |
granulocyte monocyte progenitor cell | 8.63e-21 | 67 |
myeloid leukocyte | 3.01e-19 | 72 |
nongranular leukocyte | 7.97e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 4.38e-15 | 120 |
leukocyte | 4.44e-13 | 136 |
myeloid cell | 2.62e-12 | 108 |
common myeloid progenitor | 2.62e-12 | 108 |
hematopoietic oligopotent progenitor cell | 9.86e-11 | 161 |
hematopoietic multipotent progenitor cell | 9.86e-11 | 161 |
hematopoietic stem cell | 3.37e-10 | 168 |
hematopoietic cell | 1.42e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.22e-21 | 76 |
bone element | 1.07e-19 | 82 |
skeletal element | 8.44e-18 | 90 |
immune system | 3.59e-17 | 93 |
hematopoietic system | 3.31e-16 | 98 |
blood island | 3.31e-16 | 98 |
skeletal system | 7.56e-16 | 100 |
hemolymphoid system | 1.52e-14 | 108 |
cranial nerve II | 1.19e-11 | 1 |
cranial nerve | 1.19e-11 | 1 |
nerve trunk | 1.19e-11 | 1 |
nerve connecting eye with brain | 1.19e-11 | 1 |
nerve | 1.19e-11 | 1 |
retinal neural layer | 1.19e-11 | 1 |
presumptive neural retina | 1.19e-11 | 1 |
musculoskeletal system | 2.82e-10 | 167 |
lateral plate mesoderm | 4.43e-08 | 203 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 1.32e-11 | 1 |
myeloma | 1.32e-11 | 1 |