FFCP PHASE1:Hg19::chr16:3064836..3064855,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:3064836..3064855,+ | |||
|coexpression_cluster_id=C1028 | |coexpression_cluster_id=C1028 | ||
|description=CAGE_peak_at_chr16:3064836..3064855,+ | |description=CAGE_peak_at_chr16:3064836..3064855,+ | ||
|id=chr16:3064836..3064855,+ | |id=chr16:3064836..3064855,+ | ||
|ontology_enrichment_celltype=CL:0000039!4.17e-33!7;CL:0000586!4.17e-33!7;CL:0002322!7.53e-25!5;CL:1000507!3.04e-19!12;CL:1000494!3.04e-19!12;CL:1000449!1.21e-18!16;CL:1000497!1.99e-16!18;CL:0002518!1.99e-16!18;CL:0002681!3.74e-13!13;CL:0002584!3.74e-13!13;CL:0000066!1.26e-08!254;CL:0000540!2.67e-08!6;CL:0000031!2.67e-08!6;CL:0000404!2.67e-08!6;CL:0000075!7.37e-08!27;CL:0000239!2.12e-07!3;CL:1000615!2.12e-07!3;CL:0002306!2.12e-07!3;CL:0002605!4.27e-07!3 | |ontology_enrichment_celltype=CL:0000039!4.17e-33!7;CL:0000586!4.17e-33!7;CL:0002322!7.53e-25!5;CL:1000507!3.04e-19!12;CL:1000494!3.04e-19!12;CL:1000449!1.21e-18!16;CL:1000497!1.99e-16!18;CL:0002518!1.99e-16!18;CL:0002681!3.74e-13!13;CL:0002584!3.74e-13!13;CL:0000066!1.26e-08!254;CL:0000540!2.67e-08!6;CL:0000031!2.67e-08!6;CL:0000404!2.67e-08!6;CL:0000075!7.37e-08!27;CL:0000239!2.12e-07!3;CL:1000615!2.12e-07!3;CL:0002306!2.12e-07!3;CL:0002605!4.27e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.13e-33;5!CL:1000449;1.78e-17;15!CL:1000507;5.98e-17;10!CL:1000494;5.98e-17;10!CL:0000540;1.09e-16;6!CL:0000404;1.09e-16;6!CL:1000497;2.05e-15;17!CL:0002518;2.05e-15;17!CL:0000039;6.64e-14;7!CL:0000586;6.64e-14;7!CL:0002321;2.44e-11;15!CL:0002681;1.66e-08;12!CL:0002584;1.66e-08;12!CL:1000746;5.67e-07;7!CL:1000612;5.67e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.40e-33,5;CL:1000449,2.27e-17,15;CL:1000507,7.99e-17,10;CL:1000494,7.99e-17,10;CL:0000540,1.18e-16,6;CL:0000031,1.18e-16,6;CL:0000404,1.18e-16,6;CL:1000497,2.53e-15,17;CL:0002518,2.53e-15,17;CL:0000039,5.44e-14,7;CL:0000586,5.44e-14,7;CL:0000047,1.22e-12,8;CL:0002681,1.91e-08,12;CL:0002584,1.91e-08,12;CL:1000746,6.20e-07,7;CL:1000612,6.20e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;1.09e-16;6 | |||
|ontology_enrichment_disease=DOID:3095!3.46e-20!22;DOID:2994!3.46e-20!22 | |ontology_enrichment_disease=DOID:3095!3.46e-20!22;DOID:2994!3.46e-20!22 | ||
|ontology_enrichment_disease_v019=DOID:1799;6.61e-12;1!DOID:10165;6.61e-12;1!DOID:1798;6.61e-12;1!DOID:3095;9.57e-12;22!DOID:2994;9.57e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,6.26e-12,1;DOID:10165,6.26e-12,1;DOID:1798,6.26e-12,1;DOID:3095,8.94e-12,22;DOID:2994,8.94e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0009773!3.04e-19!12;UBERON:0001231!3.04e-19!12;UBERON:0004810!3.04e-19!12;UBERON:0004211!1.21e-18!16;UBERON:0001285!1.21e-18!16;UBERON:0007684!1.21e-18!16;UBERON:0003220!1.21e-18!16;UBERON:0004208!1.21e-18!16;UBERON:0006555!1.80e-17!17;UBERON:0005103!1.80e-17!17;UBERON:0000083!1.80e-17!17;UBERON:0009201!1.80e-17!17;UBERON:0004819!1.80e-17!17;UBERON:0006553!1.80e-17!17;UBERON:0003074!1.80e-17!17;UBERON:0003060!1.80e-17!17;UBERON:0000080!1.99e-16!18;UBERON:0002120!1.99e-16!18;UBERON:0004875!1.99e-16!18;UBERON:0005721!1.99e-16!18;UBERON:0005754!1.99e-16!18;UBERON:0007297!1.99e-16!18;UBERON:0004876!1.17e-14!20;UBERON:0003887!6.75e-14!21;UBERON:0002113!3.72e-13!27;UBERON:0003918!3.72e-13!27;UBERON:0005095!3.72e-13!27;UBERON:0007687!3.72e-13!27;UBERON:0001225!3.74e-13!13;UBERON:0008987!3.74e-13!13;UBERON:0003886!3.15e-12!63;UBERON:0000058!5.62e-11!26;UBERON:0000489!7.47e-11!32;UBERON:0002553!1.05e-10!70;UBERON:0001851!1.43e-10!16;UBERON:0000353!6.53e-10!17;UBERON:0000473!9.69e-10!8;UBERON:0005172!1.88e-08!55;UBERON:0005173!1.88e-08!55;UBERON:0006554!1.80e-07!44;UBERON:0002417!2.03e-07!61;UBERON:0000916!2.03e-07!61;UBERON:0006853!2.12e-07!3;UBERON:0007685!2.12e-07!3;UBERON:0004134!2.12e-07!3;UBERON:0000466!2.40e-07!126;UBERON:0003064!2.45e-07!37;UBERON:0000464!2.47e-07!104;UBERON:0001008!2.85e-07!45;UBERON:0003135!4.21e-07!11 | |ontology_enrichment_uberon=UBERON:0009773!3.04e-19!12;UBERON:0001231!3.04e-19!12;UBERON:0004810!3.04e-19!12;UBERON:0004211!1.21e-18!16;UBERON:0001285!1.21e-18!16;UBERON:0007684!1.21e-18!16;UBERON:0003220!1.21e-18!16;UBERON:0004208!1.21e-18!16;UBERON:0006555!1.80e-17!17;UBERON:0005103!1.80e-17!17;UBERON:0000083!1.80e-17!17;UBERON:0009201!1.80e-17!17;UBERON:0004819!1.80e-17!17;UBERON:0006553!1.80e-17!17;UBERON:0003074!1.80e-17!17;UBERON:0003060!1.80e-17!17;UBERON:0000080!1.99e-16!18;UBERON:0002120!1.99e-16!18;UBERON:0004875!1.99e-16!18;UBERON:0005721!1.99e-16!18;UBERON:0005754!1.99e-16!18;UBERON:0007297!1.99e-16!18;UBERON:0004876!1.17e-14!20;UBERON:0003887!6.75e-14!21;UBERON:0002113!3.72e-13!27;UBERON:0003918!3.72e-13!27;UBERON:0005095!3.72e-13!27;UBERON:0007687!3.72e-13!27;UBERON:0001225!3.74e-13!13;UBERON:0008987!3.74e-13!13;UBERON:0003886!3.15e-12!63;UBERON:0000058!5.62e-11!26;UBERON:0000489!7.47e-11!32;UBERON:0002553!1.05e-10!70;UBERON:0001851!1.43e-10!16;UBERON:0000353!6.53e-10!17;UBERON:0000473!9.69e-10!8;UBERON:0005172!1.88e-08!55;UBERON:0005173!1.88e-08!55;UBERON:0006554!1.80e-07!44;UBERON:0002417!2.03e-07!61;UBERON:0000916!2.03e-07!61;UBERON:0006853!2.12e-07!3;UBERON:0007685!2.12e-07!3;UBERON:0004134!2.12e-07!3;UBERON:0000466!2.40e-07!126;UBERON:0003064!2.45e-07!37;UBERON:0000464!2.47e-07!104;UBERON:0001008!2.85e-07!45;UBERON:0003135!4.21e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.78e-17;15!UBERON:0004819;1.78e-17;15!UBERON:0001285;1.78e-17;15!UBERON:0007684;1.78e-17;15!UBERON:0004211;5.98e-17;10!UBERON:0009773;5.98e-17;10!UBERON:0001231;5.98e-17;10!UBERON:0004810;5.98e-17;10!UBERON:0002113;6.76e-11;24!UBERON:0011143;6.76e-11;24!UBERON:0000489;5.36e-09;29!UBERON:0006554;1.08e-08;30!UBERON:0001008;1.08e-08;30!UBERON:0001225;1.66e-08;12!UBERON:0008987;1.66e-08;12!UBERON:0000074;5.67e-07;7!UBERON:0001229;5.67e-07;7!UBERON:0001851;6.70e-07;15!UBERON:0000353;6.70e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.27e-17,15;UBERON:0009773,2.27e-17,15;UBERON:0001231,2.27e-17,15;UBERON:0001285,2.27e-17,15;UBERON:0007684,2.27e-17,15;UBERON:0004208,2.27e-17,15;UBERON:0004810,7.99e-17,10;UBERON:0006555,2.78e-16,16;UBERON:0004819,2.78e-16,16;UBERON:0002113,5.44e-10,26;UBERON:0003918,5.44e-10,26;UBERON:0011143,5.44e-10,26;UBERON:0005095,5.44e-10,26;UBERON:0007687,5.44e-10,26;UBERON:0001225,1.91e-08,12;UBERON:0008987,1.91e-08,12;UBERON:0000489,2.33e-08,31;UBERON:0010532,6.20e-07,7;UBERON:0000074,6.20e-07,7;UBERON:0001229,6.20e-07,7;UBERON:0001230,6.20e-07,7;UBERON:0003220,6.20e-07,7;UBERON:0005749,6.20e-07,7;UBERON:0004199,6.20e-07,7;UBERON:0004209,6.20e-07,7;UBERON:0004198,6.20e-07,7;UBERON:0001851,7.50e-07,15;UBERON:0000353,7.50e-07,15 | |||
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|short_description=p@chr16:3064836..3064855,+ | |short_description=p@chr16:3064836..3064855,+ | ||
}} | }} |
Latest revision as of 08:13, 25 July 2015
Short description: | p@chr16:3064836..3064855, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3064836..3064855, + |
Coexpression cluster: | C1028_Alveolar_Renal_iPS_teratocarcinoma_H9_HES3GFP_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.40e-33 | 5 |
epithelial cell of nephron | 2.27e-17 | 15 |
kidney tubule cell | 7.99e-17 | 10 |
nephron tubule epithelial cell | 7.99e-17 | 10 |
neuron | 1.18e-16 | 6 |
neuroblast | 1.18e-16 | 6 |
electrically signaling cell | 1.18e-16 | 6 |
kidney cell | 2.53e-15 | 17 |
kidney epithelial cell | 2.53e-15 | 17 |
germ line cell | 5.44e-14 | 7 |
germ cell | 5.44e-14 | 7 |
neuronal stem cell | 1.22e-12 | 8 |
kidney cortical cell | 1.91e-08 | 12 |
renal cortical epithelial cell | 1.91e-08 | 12 |
glomerular cell | 6.20e-07 | 7 |
kidney corpuscule cell | 6.20e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.27e-17 | 15 |
renal tubule | 2.27e-17 | 15 |
nephron tubule | 2.27e-17 | 15 |
nephron | 2.27e-17 | 15 |
uriniferous tubule | 2.27e-17 | 15 |
nephrogenic mesenchyme | 2.27e-17 | 15 |
nephron tubule epithelium | 7.99e-17 | 10 |
excretory tube | 2.78e-16 | 16 |
kidney epithelium | 2.78e-16 | 16 |
kidney | 5.44e-10 | 26 |
kidney mesenchyme | 5.44e-10 | 26 |
upper urinary tract | 5.44e-10 | 26 |
kidney rudiment | 5.44e-10 | 26 |
kidney field | 5.44e-10 | 26 |
cortex of kidney | 1.91e-08 | 12 |
renal parenchyma | 1.91e-08 | 12 |
cavitated compound organ | 2.33e-08 | 31 |
primitive nephron | 6.20e-07 | 7 |
renal glomerulus | 6.20e-07 | 7 |
renal corpuscle | 6.20e-07 | 7 |
glomerular capsule | 6.20e-07 | 7 |
metanephric mesenchyme | 6.20e-07 | 7 |
glomerular tuft | 6.20e-07 | 7 |
S-shaped body | 6.20e-07 | 7 |
renal vesicle | 6.20e-07 | 7 |
comma-shaped body | 6.20e-07 | 7 |
cortex | 7.50e-07 | 15 |
parenchyma | 7.50e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.26e-12 | 1 |
endocrine pancreas cancer | 6.26e-12 | 1 |
pancreatic endocrine carcinoma | 6.26e-12 | 1 |
germ cell and embryonal cancer | 8.94e-12 | 22 |
germ cell cancer | 8.94e-12 | 22 |