FFCP PHASE1:Hg19::chr9:130912603..130912639,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:130912603..130912639,- | |||
|coexpression_cluster_id=C484 | |||
|description=CAGE_peak_at_chr9:130912603..130912639,- | |description=CAGE_peak_at_chr9:130912603..130912639,- | ||
|id=chr9:130912603..130912639,- | |id=chr9:130912603..130912639,- | ||
|ontology_enrichment_celltype=CL:0002076!2.15e-23!43;CL:0000066!2.40e-22!254;CL:0000223!4.84e-21!59;CL:0002251!1.67e-10!21;CL:0002368!3.57e-10!13 | |ontology_enrichment_celltype=CL:0002076!2.15e-23!43;CL:0000066!2.40e-22!254;CL:0000223!4.84e-21!59;CL:0002251!1.67e-10!21;CL:0002368!3.57e-10!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;5.95e-14;42!CL:0002368;1.39e-10;13!CL:0002621;1.21e-09;3!CL:1000415;1.80e-07;2!CL:0002251;7.52e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.73e-20,42;CL:0000066,3.27e-16,253;CL:0000223,8.36e-15,58;CL:0002368,1.20e-10,13;CL:0002621,1.35e-09,3;CL:1000415,2.01e-07,2;CL:0002251,7.75e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;6.88e-09;58!UBERON:0008814;2.99e-07;2!UBERON:0010056;2.99e-07;2 | |||
|ontology_enrichment_disease=DOID:305!3.66e-17!106;DOID:1749!2.55e-16!14;DOID:299!1.05e-10!25;DOID:0050687!2.35e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:299;4.96e-11;25!DOID:1749;2.99e-10;14!DOID:3493;1.44e-07;2!DOID:4929;2.21e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.61e-15,106;DOID:299,4.35e-11,25;DOID:1749,2.81e-10,14;DOID:0050687,2.61e-09,143;DOID:3493,1.37e-07,2;DOID:4929,2.22e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.24e-25!169;UBERON:0000925!2.24e-25!169;UBERON:0006595!2.24e-25!169;UBERON:0001007!2.33e-21!155;UBERON:0001555!2.33e-21!155;UBERON:0007026!2.33e-21!155;UBERON:0000077!9.18e-18!130;UBERON:0004921!1.00e-16!129;UBERON:0004185!1.00e-16!129;UBERON:0000161!1.69e-16!35;UBERON:0001004!9.30e-16!72;UBERON:0000466!6.62e-15!126;UBERON:0001041!8.84e-14!98;UBERON:0000464!4.75e-13!104;UBERON:0000166!7.36e-13!21;UBERON:0005911!1.15e-12!82;UBERON:0005177!4.87e-11!107;UBERON:0002294!1.02e-10!7;UBERON:0001173!1.02e-10!7;UBERON:0004912!1.02e-10!7;UBERON:0000065!4.23e-10!53;UBERON:0000165!1.05e-09!28;UBERON:0000930!1.05e-09!28;UBERON:0003104!4.72e-09!238;UBERON:0009142!4.72e-09!238;UBERON:0005178!1.44e-07!34;UBERON:0002224!1.44e-07!34;UBERON:0001008!2.43e-07!45;UBERON:0005181!3.13e-07!35;UBERON:0009569!3.52e-07!113;UBERON:0003064!3.71e-07!37;UBERON:0003929!4.10e-07!54;UBERON:0002553!5.76e-07!70;UBERON:0000344!7.58e-07!12;UBERON:0003729!9.38e-07!5;UBERON:0002394!9.95e-07!4;UBERON:0003928!9.95e-07!4 | |ontology_enrichment_uberon=UBERON:0004119!2.24e-25!169;UBERON:0000925!2.24e-25!169;UBERON:0006595!2.24e-25!169;UBERON:0001007!2.33e-21!155;UBERON:0001555!2.33e-21!155;UBERON:0007026!2.33e-21!155;UBERON:0000077!9.18e-18!130;UBERON:0004921!1.00e-16!129;UBERON:0004185!1.00e-16!129;UBERON:0000161!1.69e-16!35;UBERON:0001004!9.30e-16!72;UBERON:0000466!6.62e-15!126;UBERON:0001041!8.84e-14!98;UBERON:0000464!4.75e-13!104;UBERON:0000166!7.36e-13!21;UBERON:0005911!1.15e-12!82;UBERON:0005177!4.87e-11!107;UBERON:0002294!1.02e-10!7;UBERON:0001173!1.02e-10!7;UBERON:0004912!1.02e-10!7;UBERON:0000065!4.23e-10!53;UBERON:0000165!1.05e-09!28;UBERON:0000930!1.05e-09!28;UBERON:0003104!4.72e-09!238;UBERON:0009142!4.72e-09!238;UBERON:0005178!1.44e-07!34;UBERON:0002224!1.44e-07!34;UBERON:0001008!2.43e-07!45;UBERON:0005181!3.13e-07!35;UBERON:0009569!3.52e-07!113;UBERON:0003064!3.71e-07!37;UBERON:0003929!4.10e-07!54;UBERON:0002553!5.76e-07!70;UBERON:0000344!7.58e-07!12;UBERON:0003729!9.38e-07!5;UBERON:0002394!9.95e-07!4;UBERON:0003928!9.95e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002294;3.24e-11;7!UBERON:0001173;3.24e-11;7!UBERON:0001723;9.66e-10;3!UBERON:0001033;9.66e-10;3!UBERON:0001949;1.21e-09;3!UBERON:0000161;4.47e-09;19!UBERON:0000166;4.47e-09;19!UBERON:0000165;5.72e-09;28!UBERON:0006562;8.97e-08;2!UBERON:0002394;1.21e-07;4!UBERON:0003928;1.21e-07;4!UBERON:0005181;1.31e-07;35!UBERON:0004807;1.64e-07;22!UBERON:0001041;1.65e-07;14!UBERON:0003126;2.67e-07;7!UBERON:0001005;2.67e-07;7!UBERON:0003127;2.81e-07;2!UBERON:0001829;2.99e-07;2!UBERON:0005178;3.27e-07;34!UBERON:0002224;3.27e-07;34!UBERON:0007196;6.61e-07;15!UBERON:0001558;6.61e-07;15!UBERON:0000344;8.99e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.40e-17,160;UBERON:0000925,8.40e-17,160;UBERON:0006595,8.40e-17,160;UBERON:0001004,9.39e-16,74;UBERON:0001007,1.01e-15,145;UBERON:0001555,1.01e-15,145;UBERON:0007026,1.01e-15,145;UBERON:0004921,2.49e-14,118;UBERON:0001041,4.45e-14,87;UBERON:0000161,1.44e-13,36;UBERON:0000065,4.60e-12,54;UBERON:0000166,5.41e-12,22;UBERON:0001723,7.81e-10,3;UBERON:0001033,7.81e-10,3;UBERON:0010056,7.81e-10,3;UBERON:0001949,1.35e-09,3;UBERON:0005911,9.80e-09,82;UBERON:0002294,1.21e-08,9;UBERON:0001173,1.21e-08,9;UBERON:0004912,1.21e-08,9;UBERON:0000165,1.28e-08,29;UBERON:0000930,1.28e-08,29;UBERON:0005178,1.90e-08,34;UBERON:0002224,1.90e-08,34;UBERON:0005181,3.83e-08,35;UBERON:0000072,4.03e-08,47;UBERON:0003127,2.22e-07,2;UBERON:0003126,2.65e-07,7;UBERON:0001005,2.65e-07,7;UBERON:0001829,2.68e-07,2;UBERON:0005177,3.28e-07,101;UBERON:0006562,5.22e-07,11;UBERON:0007196,6.19e-07,15;UBERON:0001558,6.19e-07,15;UBERON:0000344,9.86e-07,20 | |||
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|short_description=p@chr9:130912603..130912639,- | |short_description=p@chr9:130912603..130912639,- | ||
}} | }} |
Latest revision as of 23:07, 31 July 2015
Short description: | p@chr9:130912603..130912639, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:130912603..130912639, - |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.73e-20 | 42 |
epithelial cell | 3.27e-16 | 253 |
endodermal cell | 8.36e-15 | 58 |
respiratory epithelial cell | 1.20e-10 | 13 |
gingival epithelial cell | 1.35e-09 | 3 |
epithelial cell of gall bladder | 2.01e-07 | 2 |
epithelial cell of alimentary canal | 7.75e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.40e-17 | 160 |
endoderm | 8.40e-17 | 160 |
presumptive endoderm | 8.40e-17 | 160 |
respiratory system | 9.39e-16 | 74 |
digestive system | 1.01e-15 | 145 |
digestive tract | 1.01e-15 | 145 |
primitive gut | 1.01e-15 | 145 |
subdivision of digestive tract | 2.49e-14 | 118 |
foregut | 4.45e-14 | 87 |
orifice | 1.44e-13 | 36 |
respiratory tract | 4.60e-12 | 54 |
oral opening | 5.41e-12 | 22 |
tongue | 7.81e-10 | 3 |
gustatory system | 7.81e-10 | 3 |
future tongue | 7.81e-10 | 3 |
gingival epithelium | 1.35e-09 | 3 |
endo-epithelium | 9.80e-09 | 82 |
biliary system | 1.21e-08 | 9 |
biliary tree | 1.21e-08 | 9 |
biliary bud | 1.21e-08 | 9 |
mouth | 1.28e-08 | 29 |
stomodeum | 1.28e-08 | 29 |
thoracic cavity element | 1.90e-08 | 34 |
thoracic cavity | 1.90e-08 | 34 |
thoracic segment organ | 3.83e-08 | 35 |
segment of respiratory tract | 4.03e-08 | 47 |
open tracheal system trachea | 2.22e-07 | 2 |
trachea | 2.65e-07 | 7 |
respiratory airway | 2.65e-07 | 7 |
major salivary gland | 2.68e-07 | 2 |
trunk region element | 3.28e-07 | 101 |
pharynx | 5.22e-07 | 11 |
tracheobronchial tree | 6.19e-07 | 15 |
lower respiratory tract | 6.19e-07 | 15 |
mucosa | 9.86e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.61e-15 | 106 |
adenocarcinoma | 4.35e-11 | 25 |
squamous cell carcinoma | 2.81e-10 | 14 |
cell type cancer | 2.61e-09 | 143 |
signet ring cell adenocarcinoma | 1.37e-07 | 2 |
tubular adenocarcinoma | 2.22e-07 | 2 |