FFCP PHASE1:Hg19::chr20:33735020..33735036,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:33735020..33735036,- to FFCP PHASE1:Hg19::chr20:33735020..33735036,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55741 | |EntrezGene=55741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15877 | |HGNC=15877 | ||
|TSSclassifier=strong | |||
|UniProt=B4E1F4 | |UniProt=B4E1F4 | ||
|association_with_transcript=104bp_to_ENST00000542871_5end | |||
|cluster_id=chr20:33735020..33735036,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_5_at_EDEM2_5end | |||
|id=chr20:33735020..33735036,- | |||
|ontology_enrichment_celltype=CL:0000557!4.53e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.65e-26;39!CL:0000234;2.65e-26;39!CL:0000860;4.25e-21;33!CL:0002057;4.25e-21;33!CL:0000097;9.32e-16;5!CL:0000235;7.04e-13;6!CL:0000766;3.37e-12;69!CL:0000576;1.49e-10;48!CL:0000163;8.64e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,6.96e-27,66;CL:0000557,2.05e-26,67;CL:0000473,3.61e-25,48;CL:0000234,3.61e-25,48;CL:0000766,2.89e-24,72;CL:0002194,2.42e-19,59;CL:0000576,2.42e-19,59;CL:0000040,2.42e-19,59;CL:0000559,2.42e-19,59;CL:0002009,1.37e-18,61;CL:0000860,7.78e-17,42;CL:0002057,7.78e-17,42;CL:0000097,8.69e-16,5;CL:0002028,8.69e-16,5;CL:0000763,1.26e-14,108;CL:0000049,1.26e-14,108;CL:0000235,9.63e-13,6;CL:0002031,1.07e-12,120;CL:0000988,4.14e-11,177;CL:0000738,1.17e-10,136;CL:0000163,8.32e-09,9;CL:0002032,2.69e-08,161;CL:0000837,2.69e-08,161;CL:0002087,3.63e-08,115;CL:0000037,9.17e-08,168 | |||
|ontology_enrichment_development_v019=CL:0002057;7.36e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.37e-07!80;UBERON:0001474!8.93e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.04e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.54e-23,76;UBERON:0002390,1.72e-22,98;UBERON:0003061,1.72e-22,98;UBERON:0001474,9.60e-21,82;UBERON:0002193,6.50e-20,108;UBERON:0004765,1.74e-18,90;UBERON:0002405,9.69e-18,93;UBERON:0001434,3.59e-16,100;UBERON:0003081,4.70e-12,203;UBERON:0002204,8.19e-10,167;UBERON:0000926,1.76e-08,315;UBERON:0004120,1.76e-08,315;UBERON:0006603,1.76e-08,315;UBERON:0002331,8.08e-08,10;UBERON:0000358,8.08e-08,10;UBERON:0000307,8.08e-08,10;UBERON:0000091,8.08e-08,10;UBERON:0000087,8.08e-08,10;UBERON:0007010,8.08e-08,10;UBERON:0007806,8.08e-08,10;UBERON:0008780,8.08e-08,10;UBERON:0005728,8.08e-08,10 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,1.89515962028049,0,0.491467873003018,0,0.436882744260345,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.152826811495903,0,0.157421562627358,0.393364276848904,0,0,0.919421224478927,0,0.739508020333575,0.154934401160603,0,0.293600439334847,0,0,0,0,0,0,0,0,0.242584061187816,0.464858073811369,1.23350366406548,1.23882548358041,21.2892370318391,22.5421421745609,21.9928473796384,0,0.645484683583826,0,0,0,0.674170453335254,0,0.641858054152187,1.27867425159808,7.58657990429447,8.57693727773017,11.5080682643827,0.290209238628584,1.13477044938228,0.622822248995575,22.1098825425934,20.3378338183879,30.4064382587163,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0.393010762749165,0.411202997999018,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0,0.328875809207352,0,0,0,0.267540828089713,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,1.45990461090791,0.0945348171640679,0,0.263504357079378,0.0654895377488563,0.728590576585084,0,0,0.696518949197069,0.930705723632056,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0.71153252537342,0,0.402829317109147,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0.264818361626438,0.573673241497627,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0.423863802319124,0,0.206105058476878,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,0,0,0,0,0.193260853163297,0,0,0.365921118388786,0.662648841607426,0.69716365721711,0.310983165046111,0.252320850875628,1.09493207722749,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0.474541238222193,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.171567810298526,0.219500570817251,0,0,0.0925884451585296,0,0,1.44331342025273,0.231860809950154,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0.246217006087397,5.14809383306323,1.33768046059855,0,0.16798212819886,0,0.268675568108545,0,0,7.8826118063351,7.66021375915067,2.90259361757081,0.576479813667846,1.2624243342638,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0.600686115687835,0,0,0.43596006883328,0.22001485746285,0.775630294546667,0,0,0,0,0.257207374262142,0,0.799266537048298,0,0,0,0,0,1.58390374586686,0.301439377059586,0,0.299918973546171,3.64871341923571,1.00451418286425,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27407504055985,0,0,0,0.0868836144680828,0,0,0,0,0.213455115606889,0,0,0,0.248107807818777,0.153461973288062,0,0.384417447767103,0,0.160853921143607,1.48418066444991,0.154209693802656,0.355123450626254,0.0821271560138091,1.03850885836724,0.348631135379878,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0.784349769176855,0,0,0,0,0.431831832204279,0,0,1.00337954770971,0.254876273045038,0,0.223874754722178,0,0.261435451024901,0,0.328014645699706,0,0.206082023295445,0,0.082509499920588,0,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0.413509717453592,0.107420244868274,0,0.340906509664404,0.0890320356467374,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,0,0.286249773483982,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0.117812402345686,0.808729926293264,1.58510321173008,0,0.48763373908959,0,1.05650146756755,0,0,0,0.551365343546124,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0.0982490410131212,0,0,0,0,0.75894634753143,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0.854592569019785,0.962479855263359,0,0,0,0.0711418433484141,0,0.399158742865633,0,0.635020748171649,0.649243880549111,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0,0.223676107892416,0,0.19538809540204,0.278406173895242,0,0.540911356951966,0.33307196799782,0,0,0.293016358543788,0,0,0.568272293612826,0,0,0,0,0,0.111308705022906,0.16480387422676,0.422250816255987,0.19924798825107,0.276283915531148,0.251932747854276,0.102268682502155,0.369254416383208,0.311039587661807,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0,0,0,0,0.23056390438806,0.0897576444097721,0.108647371922008,0,0.274792780205587,0,0,0.627921025580099,0.332423363800313,0,0,0.167821586975843,0.189753732724185,0,0.210998064528027,0.979396848954886,0.282706142867882,0.216388639742091,0,0,0,2.37216902944498,2.71840665682306,1.46190729307638,0.067401132980677,0,0,0,0.19566461893209,0.485560759068186,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0.783532859223623,0.34945333648406,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,0,0,0,0.137041924646751,0,0.126621591911757,0.195551382734803,0.160317640503067,0.213452994739353,0.19980960958213,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0.42976544141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| 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| ||
|short_description=p5@EDEM2 | |||
}} | }} |
Latest revision as of 19:09, 15 September 2015
Short description: | p5@EDEM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_EDEM2_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 104bp_to_ENST00000542871_5end |
EntrezGene: | EDEM2 |
HGNC: | 15877 |
UniProt: | B4E1F4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 6.96e-27 | 66 |
granulocyte monocyte progenitor cell | 2.05e-26 | 67 |
defensive cell | 3.61e-25 | 48 |
phagocyte | 3.61e-25 | 48 |
myeloid leukocyte | 2.89e-24 | 72 |
monopoietic cell | 2.42e-19 | 59 |
monocyte | 2.42e-19 | 59 |
monoblast | 2.42e-19 | 59 |
promonocyte | 2.42e-19 | 59 |
macrophage dendritic cell progenitor | 1.37e-18 | 61 |
classical monocyte | 7.78e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.78e-17 | 42 |
mast cell | 8.69e-16 | 5 |
basophil mast progenitor cell | 8.69e-16 | 5 |
myeloid cell | 1.26e-14 | 108 |
common myeloid progenitor | 1.26e-14 | 108 |
macrophage | 9.63e-13 | 6 |
hematopoietic lineage restricted progenitor cell | 1.07e-12 | 120 |
hematopoietic cell | 4.14e-11 | 177 |
leukocyte | 1.17e-10 | 136 |
endocrine cell | 8.32e-09 | 9 |
hematopoietic oligopotent progenitor cell | 2.69e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.69e-08 | 161 |
nongranular leukocyte | 3.63e-08 | 115 |
hematopoietic stem cell | 9.17e-08 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.54e-23 | 76 |
hematopoietic system | 1.72e-22 | 98 |
blood island | 1.72e-22 | 98 |
bone element | 9.60e-21 | 82 |
hemolymphoid system | 6.50e-20 | 108 |
skeletal element | 1.74e-18 | 90 |
immune system | 9.69e-18 | 93 |
skeletal system | 3.59e-16 | 100 |
lateral plate mesoderm | 4.70e-12 | 203 |
musculoskeletal system | 8.19e-10 | 167 |
mesoderm | 1.76e-08 | 315 |
mesoderm-derived structure | 1.76e-08 | 315 |
presumptive mesoderm | 1.76e-08 | 315 |
umbilical cord | 8.08e-08 | 10 |
blastocyst | 8.08e-08 | 10 |
blastula | 8.08e-08 | 10 |
bilaminar disc | 8.08e-08 | 10 |
inner cell mass | 8.08e-08 | 10 |
cleaving embryo | 8.08e-08 | 10 |
connecting stalk | 8.08e-08 | 10 |
inner cell mass derived epiblast | 8.08e-08 | 10 |
extraembryonic mesoderm | 8.08e-08 | 10 |