FFCP PHASE1:Hg19::chr20:43030002..43030028,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3172 | |EntrezGene=3172 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5024 | |HGNC=5024 | ||
|TSSclassifier=strong | |||
|UniProt=P41235,E7ERE7,F1D8T1,F1D8S2 | |UniProt=P41235,E7ERE7,F1D8T1,F1D8S2 | ||
|association_with_transcript=78bp_to_ENST00000316099,ENST00000338692,ENST00000415691,ENST00000443598,NM_000457,NM_178849,NM_178850,uc002xly.2,uc002xlz.2,uc002xma.2,uc010ggq.2_5end | |association_with_transcript=78bp_to_ENST00000316099,ENST00000338692,ENST00000415691,ENST00000443598,NM_000457,NM_178849,NM_178850,uc002xly.2,uc002xlz.2,uc002xma.2,uc010ggq.2_5end | ||
|cluster_id=chr20:43030002..43030028,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_3_at_HNF4A_5end | |description=CAGE_peak_3_at_HNF4A_5end | ||
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|ontology_enrichment_celltype=CL:0000181!1.38e-25!12;CL:0000417!1.38e-25!12;CL:0000668!1.38e-25!12;CL:0000414!1.38e-25!12;CL:0000412!1.38e-25!12;CL:0000182!1.38e-25!12;CL:0000223!1.51e-09!59;CL:0002322!8.41e-09!5 | |ontology_enrichment_celltype=CL:0000181!1.38e-25!12;CL:0000417!1.38e-25!12;CL:0000668!1.38e-25!12;CL:0000414!1.38e-25!12;CL:0000412!1.38e-25!12;CL:0000182!1.38e-25!12;CL:0000223!1.51e-09!59;CL:0002322!8.41e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.45e-26;12!CL:0002563;2.71e-07;4 | |ontology_enrichment_celltype_v019=CL:0000182;1.45e-26;12!CL:0002563;2.71e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.51e-26,12;CL:0000223,1.27e-09,58;CL:0002563,2.58e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.32e-21;11!UBERON:0009497;5.35e-18;13!UBERON:0003104;4.37e-16;31!UBERON:0001041;6.00e-10;30!UBERON:0001045;1.59e-07;1 | |ontology_enrichment_development_v019=UBERON:0004161;2.32e-21;11!UBERON:0009497;5.35e-18;13!UBERON:0003104;4.37e-16;31!UBERON:0001041;6.00e-10;30!UBERON:0001045;1.59e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.39e-29!19;UBERON:0006925!1.39e-29!19;UBERON:0008836!1.39e-29!19;UBERON:0009854!1.36e-28!23;UBERON:0009497!5.07e-26!25;UBERON:0000015!5.07e-26!25;UBERON:0002423!5.07e-26!25;UBERON:0006235!5.07e-26!25;UBERON:0004161!5.07e-26!25;UBERON:0008835!3.06e-25!22;UBERON:0003894!3.06e-25!22;UBERON:0009856!5.35e-25!26;UBERON:0007499!6.10e-22!25;UBERON:0005057!5.20e-21!26;UBERON:0000160!8.70e-19!27;UBERON:0002365!2.94e-17!31;UBERON:0002330!2.94e-17!31;UBERON:0003929!3.87e-17!54;UBERON:0005172!7.12e-17!55;UBERON:0005173!7.12e-17!55;UBERON:0004921!3.60e-16!129;UBERON:0004185!3.60e-16!129;UBERON:0000059!1.60e-15!11;UBERON:0002368!4.97e-15!35;UBERON:0002417!6.96e-15!61;UBERON:0000916!6.96e-15!61;UBERON:0005409!4.00e-14!35;UBERON:0001007!7.50e-14!155;UBERON:0001555!7.50e-14!155;UBERON:0007026!7.50e-14!155;UBERON:0001155!1.61e-13!9;UBERON:0000949!2.45e-13!45;UBERON:0004119!3.00e-12!169;UBERON:0000925!3.00e-12!169;UBERON:0006595!3.00e-12!169;UBERON:0005911!1.08e-11!82;UBERON:0002530!1.26e-09!59;UBERON:0005177!2.11e-09!107;UBERON:0004907!3.34e-09!5;UBERON:0000077!4.60e-08!130;UBERON:0009569!1.35e-07!113;UBERON:0000466!2.73e-07!126 | |ontology_enrichment_uberon=UBERON:0002107!1.39e-29!19;UBERON:0006925!1.39e-29!19;UBERON:0008836!1.39e-29!19;UBERON:0009854!1.36e-28!23;UBERON:0009497!5.07e-26!25;UBERON:0000015!5.07e-26!25;UBERON:0002423!5.07e-26!25;UBERON:0006235!5.07e-26!25;UBERON:0004161!5.07e-26!25;UBERON:0008835!3.06e-25!22;UBERON:0003894!3.06e-25!22;UBERON:0009856!5.35e-25!26;UBERON:0007499!6.10e-22!25;UBERON:0005057!5.20e-21!26;UBERON:0000160!8.70e-19!27;UBERON:0002365!2.94e-17!31;UBERON:0002330!2.94e-17!31;UBERON:0003929!3.87e-17!54;UBERON:0005172!7.12e-17!55;UBERON:0005173!7.12e-17!55;UBERON:0004921!3.60e-16!129;UBERON:0004185!3.60e-16!129;UBERON:0000059!1.60e-15!11;UBERON:0002368!4.97e-15!35;UBERON:0002417!6.96e-15!61;UBERON:0000916!6.96e-15!61;UBERON:0005409!4.00e-14!35;UBERON:0001007!7.50e-14!155;UBERON:0001555!7.50e-14!155;UBERON:0007026!7.50e-14!155;UBERON:0001155!1.61e-13!9;UBERON:0000949!2.45e-13!45;UBERON:0004119!3.00e-12!169;UBERON:0000925!3.00e-12!169;UBERON:0006595!3.00e-12!169;UBERON:0005911!1.08e-11!82;UBERON:0002530!1.26e-09!59;UBERON:0005177!2.11e-09!107;UBERON:0004907!3.34e-09!5;UBERON:0000077!4.60e-08!130;UBERON:0009569!1.35e-07!113;UBERON:0000466!2.73e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;9.40e-34;17!UBERON:0002107;4.20e-27;19!UBERON:0006925;4.20e-27;19!UBERON:0005409;4.68e-26;22!UBERON:0000059;1.86e-20;11!UBERON:0002423;2.99e-20;25!UBERON:0001155;9.12e-18;9!UBERON:0004921;2.62e-16;33!UBERON:0002365;1.40e-15;31!UBERON:0002330;1.40e-15;31!UBERON:0001007;1.03e-13;81!UBERON:0002368;1.12e-13;33!UBERON:0002108;3.62e-12;4!UBERON:0004907;8.05e-12;5!UBERON:0000949;7.96e-10;43!UBERON:0005172;4.07e-09;52!UBERON:0005173;4.07e-09;52!UBERON:0002417;1.44e-07;58!UBERON:0000916;1.44e-07;58!UBERON:0001154;1.59e-07;1!UBERON:0001301;1.59e-07;1!UBERON:0001153;1.59e-07;1!UBERON:0009854;1.59e-07;1!UBERON:0001242;2.71e-07;4!UBERON:0001262;2.71e-07;4!UBERON:0004786;2.71e-07;4!UBERON:0004808;2.71e-07;4!UBERON:0001277;2.71e-07;4!UBERON:0001052;3.44e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000160;9.40e-34;17!UBERON:0002107;4.20e-27;19!UBERON:0006925;4.20e-27;19!UBERON:0005409;4.68e-26;22!UBERON:0000059;1.86e-20;11!UBERON:0002423;2.99e-20;25!UBERON:0001155;9.12e-18;9!UBERON:0004921;2.62e-16;33!UBERON:0002365;1.40e-15;31!UBERON:0002330;1.40e-15;31!UBERON:0001007;1.03e-13;81!UBERON:0002368;1.12e-13;33!UBERON:0002108;3.62e-12;4!UBERON:0004907;8.05e-12;5!UBERON:0000949;7.96e-10;43!UBERON:0005172;4.07e-09;52!UBERON:0005173;4.07e-09;52!UBERON:0002417;1.44e-07;58!UBERON:0000916;1.44e-07;58!UBERON:0001154;1.59e-07;1!UBERON:0001301;1.59e-07;1!UBERON:0001153;1.59e-07;1!UBERON:0009854;1.59e-07;1!UBERON:0001242;2.71e-07;4!UBERON:0001262;2.71e-07;4!UBERON:0004786;2.71e-07;4!UBERON:0004808;2.71e-07;4!UBERON:0001277;2.71e-07;4!UBERON:0001052;3.44e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.46e-34,17;UBERON:0009854,3.87e-27,23;UBERON:0002107,4.34e-27,19;UBERON:0006925,4.34e-27,19;UBERON:0008836,4.34e-27,19;UBERON:0009856,8.28e-24,26;UBERON:0008835,3.37e-23,22;UBERON:0003894,3.37e-23,22;UBERON:0005409,6.89e-23,25;UBERON:0000059,1.49e-20,11;UBERON:0007499,3.06e-20,25;UBERON:0009497,3.06e-20,25;UBERON:0000015,3.06e-20,25;UBERON:0002423,3.06e-20,25;UBERON:0006235,3.06e-20,25;UBERON:0004161,3.06e-20,25;UBERON:0004921,6.80e-20,118;UBERON:0001155,8.21e-18,9;UBERON:0002365,4.87e-16,31;UBERON:0002330,4.87e-16,31;UBERON:0001007,1.95e-15,145;UBERON:0001555,1.95e-15,145;UBERON:0007026,1.95e-15,145;UBERON:0005172,1.99e-15,54;UBERON:0005173,1.99e-15,54;UBERON:0003929,2.62e-15,54;UBERON:0002368,4.88e-14,35;UBERON:0002417,1.18e-13,60;UBERON:0000916,1.18e-13,60;UBERON:0004119,1.32e-13,160;UBERON:0000925,1.32e-13,160;UBERON:0006595,1.32e-13,160;UBERON:0002108,4.30e-12,4;UBERON:0004907,6.54e-12,5;UBERON:0005911,5.51e-11,82;UBERON:0000949,1.37e-10,45;UBERON:0002530,1.57e-09,59;UBERON:0011216,1.81e-09,223;UBERON:0005177,1.62e-08,101;UBERON:0001301,1.35e-07,1;UBERON:0001154,1.44e-07,1;UBERON:0001153,1.44e-07,1;UBERON:0001045,1.44e-07,1;UBERON:0009569,1.93e-07,112;UBERON:0001242,2.58e-07,4;UBERON:0001262,2.58e-07,4;UBERON:0004786,2.58e-07,4;UBERON:0004808,2.58e-07,4;UBERON:0001277,2.58e-07,4;UBERON:0003104,2.94e-07,160;UBERON:0009142,2.94e-07,160;UBERON:0001052,3.03e-07,4 | |||
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|short_description=p3@HNF4A | |short_description=p3@HNF4A | ||
}} | }} |
Latest revision as of 08:01, 16 September 2015
Short description: | p3@HNF4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HNF4A_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 78bp_to_ENST00000316099, ENST00000338692, ENST00000415691, ENST00000443598, NM_000457, NM_178849, NM_178850, uc002xly.2, uc002xlz.2, uc002xma.2, uc010ggq.2_5end |
EntrezGene: | HNF4A |
HGNC: | 5024 |
UniProt: | P41235E7ERE7F1D8T1F1D8S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.51e-26 | 12 |
endodermal cell | 1.27e-09 | 58 |
intestinal epithelial cell | 2.58e-07 | 4 |