FFCP PHASE1:Hg19::chr20:43729759..43729774,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:43729759..43729774,- to FFCP PHASE1:Hg19::chr20:43729759..43729774,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3787 | |EntrezGene=3787 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6300 | |HGNC=6300 | ||
|TSSclassifier=strong | |||
|UniProt=Q96KK3,A2RUL8 | |UniProt=Q96KK3,A2RUL8 | ||
|association_with_transcript=-6bp_to_ENST00000306117,NM_002251,uc002xnc.2,uc002xnd.2_5end | |||
|cluster_id=chr20:43729759..43729774,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_KCNS1_5end | |||
|id=chr20:43729759..43729774,- | |||
|ontology_enrichment_celltype=CL:1000507!3.89e-09!12;CL:1000494!3.89e-09!12;CL:1000497!9.41e-09!18;CL:0002518!9.41e-09!18;CL:1000449!2.87e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.91e-20;10!CL:1000494;5.91e-20;10!CL:1000449;7.50e-13;15!CL:1000497;3.51e-11;17!CL:0002518;3.51e-11;17!CL:0000239;7.70e-11;3!CL:1000615;7.70e-11;3!CL:0002306;7.70e-11;3!CL:0002681;2.55e-09;12!CL:0002584;2.55e-09;12!CL:0000650;3.87e-07;2!CL:1000500;3.87e-07;2!CL:1000618;3.87e-07;2!CL:1001318;3.87e-07;2!CL:0002173;3.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,8.08e-20,10;CL:1000494,8.08e-20,10;CL:1000449,9.17e-13,15;CL:1000497,4.18e-11,17;CL:0002518,4.18e-11,17;CL:0000239,7.21e-11,3;CL:1000615,7.21e-11,3;CL:0002306,7.21e-11,3;CL:0002681,3.22e-09,12;CL:0002584,3.22e-09,12;CL:0000650,6.26e-07,2;CL:1000500,6.26e-07,2;CL:1000618,6.26e-07,2;CL:1001318,6.26e-07,2;CL:0002173,6.26e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!3.09e-18!22;UBERON:0001950!2.08e-16!20;UBERON:0000956!2.75e-15!25;UBERON:0000203!2.75e-15!25;UBERON:0001869!9.04e-15!32;UBERON:0001893!1.30e-14!34;UBERON:0001017!1.18e-13!82;UBERON:0001049!1.22e-13!57;UBERON:0005068!1.22e-13!57;UBERON:0006241!1.22e-13!57;UBERON:0007135!1.22e-13!57;UBERON:0002791!1.30e-13!33;UBERON:0005743!3.04e-13!86;UBERON:0002020!3.90e-13!34;UBERON:0003528!3.90e-13!34;UBERON:0002780!8.72e-13!41;UBERON:0001890!8.72e-13!41;UBERON:0006240!8.72e-13!41;UBERON:0000033!1.41e-12!123;UBERON:0000153!1.47e-12!129;UBERON:0007811!1.47e-12!129;UBERON:0003080!2.74e-12!42;UBERON:0003075!5.39e-12!86;UBERON:0007284!5.39e-12!86;UBERON:0002616!8.17e-12!59;UBERON:0000475!9.81e-12!365;UBERON:0000955!3.48e-11!69;UBERON:0006238!3.48e-11!69;UBERON:0002346!6.48e-11!90;UBERON:0000073!8.60e-11!94;UBERON:0001016!8.60e-11!94;UBERON:0000062!8.74e-11!511;UBERON:0007023!9.51e-11!115;UBERON:0000064!1.16e-10!219;UBERON:0004121!5.81e-10!169;UBERON:0003056!8.64e-10!61;UBERON:0000058!1.63e-09!26;UBERON:0000924!2.38e-09!173;UBERON:0006601!2.38e-09!173;UBERON:0009773!3.89e-09!12;UBERON:0001231!3.89e-09!12;UBERON:0004810!3.89e-09!12;UBERON:0000200!4.37e-09!6;UBERON:0004111!4.77e-09!241;UBERON:0004876!8.54e-08!20;UBERON:0000080!1.51e-07!18;UBERON:0002120!1.51e-07!18;UBERON:0004875!1.51e-07!18;UBERON:0005721!1.51e-07!18;UBERON:0005754!1.51e-07!18;UBERON:0007297!1.51e-07!18;UBERON:0000489!1.58e-07!32;UBERON:0000025!1.85e-07!194;UBERON:0000477!2.04e-07!286;UBERON:0004211!2.87e-07!16;UBERON:0001285!2.87e-07!16;UBERON:0007684!2.87e-07!16;UBERON:0003220!2.87e-07!16;UBERON:0004208!2.87e-07!16;UBERON:0003103!5.12e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.05e-40;20!UBERON:0002619;8.63e-37;22!UBERON:0000956;4.77e-32;25!UBERON:0000203;4.77e-32;25!UBERON:0001869;1.44e-27;32!UBERON:0001893;1.51e-26;34!UBERON:0002791;5.19e-24;32!UBERON:0003528;1.01e-22;34!UBERON:0002020;1.01e-22;34!UBERON:0000200;7.17e-22;6!UBERON:0004211;5.91e-20;10!UBERON:0009773;5.91e-20;10!UBERON:0001231;5.91e-20;10!UBERON:0004810;5.91e-20;10!UBERON:0002780;2.80e-15;41!UBERON:0001890;2.80e-15;41!UBERON:0006555;7.50e-13;15!UBERON:0004819;7.50e-13;15!UBERON:0001285;7.50e-13;15!UBERON:0007684;7.50e-13;15!UBERON:0001872;3.14e-12;5!UBERON:0002021;4.33e-12;5!UBERON:0001870;1.23e-11;3!UBERON:0006853;7.70e-11;3!UBERON:0007685;7.70e-11;3!UBERON:0004134;7.70e-11;3!UBERON:0000073;9.78e-10;53!UBERON:0002616;9.78e-10;53!UBERON:0000489;2.19e-09;29!UBERON:0001017;2.38e-09;75!UBERON:0001225;2.55e-09;12!UBERON:0008987;2.55e-09;12!UBERON:0002702;1.95e-08;2!UBERON:0000955;2.28e-08;68!UBERON:0002771;2.29e-08;2!UBERON:0001871;2.39e-08;6!UBERON:0005904;4.17e-08;4!UBERON:0002113;1.55e-07;24!UBERON:0011143;1.55e-07;24!UBERON:0001851;2.53e-07;15!UBERON:0000353;2.53e-07;15!UBERON:0006554;3.02e-07;30!UBERON:0001008;3.02e-07;30!UBERON:0003567;3.87e-07;2!UBERON:0003838;3.87e-07;2!UBERON:0003586;3.87e-07;2!UBERON:0005169;3.87e-07;2!UBERON:0002321;3.87e-07;2!UBERON:0005215;3.87e-07;2!UBERON:0002303;3.87e-07;2!UBERON:0002319;3.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.11e-41,20;UBERON:0002619,7.61e-37,22;UBERON:0000956,4.27e-32,25;UBERON:0000203,4.27e-32,25;UBERON:0001869,2.82e-31,32;UBERON:0001893,3.30e-29,34;UBERON:0002791,1.18e-27,32;UBERON:0003528,8.20e-26,34;UBERON:0002020,8.20e-26,34;UBERON:0002780,1.58e-23,41;UBERON:0001890,1.58e-23,41;UBERON:0003080,1.58e-23,41;UBERON:0006240,1.58e-23,41;UBERON:0000200,6.94e-22,6;UBERON:0004810,8.08e-20,10;UBERON:0001017,1.67e-18,81;UBERON:0001049,4.71e-18,56;UBERON:0005068,4.71e-18,56;UBERON:0006241,4.71e-18,56;UBERON:0007135,4.71e-18,56;UBERON:0000073,3.11e-17,53;UBERON:0002616,3.11e-17,53;UBERON:0003056,3.60e-16,61;UBERON:0001016,4.46e-16,89;UBERON:0000955,1.39e-15,68;UBERON:0006238,1.39e-15,68;UBERON:0004211,9.17e-13,15;UBERON:0009773,9.17e-13,15;UBERON:0001231,9.17e-13,15;UBERON:0001285,9.17e-13,15;UBERON:0007684,9.17e-13,15;UBERON:0004208,9.17e-13,15;UBERON:0001872,3.28e-12,5;UBERON:0003075,3.43e-12,82;UBERON:0007284,3.43e-12,82;UBERON:0002021,4.21e-12,5;UBERON:0006555,6.98e-12,16;UBERON:0004819,6.98e-12,16;UBERON:0001870,1.25e-11,3;UBERON:0002346,2.12e-11,86;UBERON:0006853,7.21e-11,3;UBERON:0007685,7.21e-11,3;UBERON:0004134,7.21e-11,3;UBERON:0007023,9.61e-11,114;UBERON:0010371,1.05e-10,104;UBERON:0000489,1.59e-10,31;UBERON:0004111,2.26e-10,240;UBERON:0004121,1.83e-09,171;UBERON:0000924,1.83e-09,171;UBERON:0006601,1.83e-09,171;UBERON:0000025,1.85e-09,192;UBERON:0001225,3.22e-09,12;UBERON:0008987,3.22e-09,12;UBERON:0010314,3.30e-09,132;UBERON:0002113,1.21e-08,26;UBERON:0003918,1.21e-08,26;UBERON:0011143,1.21e-08,26;UBERON:0005095,1.21e-08,26;UBERON:0007687,1.21e-08,26;UBERON:0002702,2.02e-08,2;UBERON:0001871,2.13e-08,6;UBERON:0002771,2.17e-08,2;UBERON:0005904,3.64e-08,4;UBERON:0011216,1.20e-07,223;UBERON:0001851,3.03e-07,15;UBERON:0000353,3.03e-07,15;UBERON:0003567,6.26e-07,2;UBERON:0003838,6.26e-07,2;UBERON:0003586,6.26e-07,2;UBERON:0005169,6.26e-07,2;UBERON:0002321,6.26e-07,2;UBERON:0005215,6.26e-07,2;UBERON:0002303,6.26e-07,2;UBERON:0002319,6.26e-07,2 | |||
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| ||
|short_description=p1@KCNS1 | |||
}} | }} |
Latest revision as of 09:16, 16 September 2015
Short description: | p1@KCNS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KCNS1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -6bp_to_ENST00000306117, NM_002251, uc002xnc.2, uc002xnd.2_5end |
EntrezGene: | KCNS1 |
HGNC: | 6300 |
UniProt: | Q96KK3A2RUL8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 8.08e-20 | 10 |
nephron tubule epithelial cell | 8.08e-20 | 10 |
epithelial cell of nephron | 9.17e-13 | 15 |
kidney cell | 4.18e-11 | 17 |
kidney epithelial cell | 4.18e-11 | 17 |
brush border epithelial cell | 7.21e-11 | 3 |
kidney cortex tubule cell | 7.21e-11 | 3 |
epithelial cell of proximal tubule | 7.21e-11 | 3 |
kidney cortical cell | 3.22e-09 | 12 |
renal cortical epithelial cell | 3.22e-09 | 12 |
mesangial cell | 6.26e-07 | 2 |
kidney interstitial cell | 6.26e-07 | 2 |
juxtaglomerular complex cell | 6.26e-07 | 2 |
renal interstitial pericyte | 6.26e-07 | 2 |
extraglomerular mesangial cell | 6.26e-07 | 2 |