FFCP PHASE1:Hg19::chr13:108922469..108922474,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10673 | |EntrezGene=10673 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11929 | |HGNC=11929 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-100bp_to_ENST00000479435_5end | |association_with_transcript=-100bp_to_ENST00000479435_5end | ||
|cluster_id=chr13:108922469..108922474,+ | |||
|coexpression_cluster_id=C1186 | |coexpression_cluster_id=C1186 | ||
|description=CAGE_peak_10_at_TNFSF13B_5end | |description=CAGE_peak_10_at_TNFSF13B_5end | ||
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|ontology_enrichment_celltype=CL:0000763!3.34e-52!112;CL:0000049!3.34e-52!112;CL:0002057!3.72e-47!42;CL:0000860!3.73e-43!45;CL:0000037!1.81e-42!172;CL:0000566!1.81e-42!172;CL:0002032!3.23e-41!165;CL:0000837!3.23e-41!165;CL:0000766!6.29e-41!76;CL:0000988!7.87e-39!182;CL:0002194!4.63e-38!63;CL:0000576!4.63e-38!63;CL:0000040!4.63e-38!63;CL:0000559!4.63e-38!63;CL:0002009!1.80e-36!65;CL:0000557!3.31e-34!71;CL:0000839!6.79e-33!70;CL:0000738!1.12e-32!140;CL:0002087!8.25e-28!119;CL:0002031!1.21e-22!124;CL:0002393!5.55e-10!9;CL:0002397!5.55e-10!9;CL:0000134!1.73e-09!358;CL:0002320!6.23e-09!365;CL:0000094!5.00e-08!8;CL:0000219!2.18e-07!390 | |ontology_enrichment_celltype=CL:0000763!3.34e-52!112;CL:0000049!3.34e-52!112;CL:0002057!3.72e-47!42;CL:0000860!3.73e-43!45;CL:0000037!1.81e-42!172;CL:0000566!1.81e-42!172;CL:0002032!3.23e-41!165;CL:0000837!3.23e-41!165;CL:0000766!6.29e-41!76;CL:0000988!7.87e-39!182;CL:0002194!4.63e-38!63;CL:0000576!4.63e-38!63;CL:0000040!4.63e-38!63;CL:0000559!4.63e-38!63;CL:0002009!1.80e-36!65;CL:0000557!3.31e-34!71;CL:0000839!6.79e-33!70;CL:0000738!1.12e-32!140;CL:0002087!8.25e-28!119;CL:0002031!1.21e-22!124;CL:0002393!5.55e-10!9;CL:0002397!5.55e-10!9;CL:0000134!1.73e-09!358;CL:0002320!6.23e-09!365;CL:0000094!5.00e-08!8;CL:0000219!2.18e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.78e-27;33!CL:0002057;8.78e-27;33!CL:0000473;1.31e-20;39!CL:0000234;1.31e-20;39!CL:0000763;5.27e-17;100!CL:0000576;1.49e-15;48!CL:0000771;5.23e-13;2!CL:0000094;3.47e-12;8!CL:0000766;1.81e-11;69!CL:0000775;5.93e-09;3!CL:0000081;7.04e-09;11!CL:0002032;9.23e-07;1!CL:0000557;9.23e-07;1 | |ontology_enrichment_celltype_v019=CL:0000860;8.78e-27;33!CL:0002057;8.78e-27;33!CL:0000473;1.31e-20;39!CL:0000234;1.31e-20;39!CL:0000763;5.27e-17;100!CL:0000576;1.49e-15;48!CL:0000771;5.23e-13;2!CL:0000094;3.47e-12;8!CL:0000766;1.81e-11;69!CL:0000775;5.93e-09;3!CL:0000081;7.04e-09;11!CL:0002032;9.23e-07;1!CL:0000557;9.23e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000763,8.78e-41,108;CL:0000049,8.78e-41,108;CL:0002032,1.59e-27,161;CL:0000837,1.59e-27,161;CL:0000860,7.66e-27,42;CL:0002057,7.66e-27,42;CL:0000766,7.89e-27,72;CL:0000473,1.50e-26,48;CL:0000234,1.50e-26,48;CL:0000037,3.89e-26,168;CL:0000988,1.65e-24,177;CL:0002194,1.49e-20,59;CL:0000576,1.49e-20,59;CL:0000040,1.49e-20,59;CL:0000559,1.49e-20,59;CL:0000557,3.62e-20,67;CL:0002009,8.86e-20,61;CL:0000839,4.78e-18,66;CL:0000738,9.92e-14,136;CL:0000771,5.24e-13,2;CL:0000094,3.48e-12,8;CL:0002087,2.48e-10,115;CL:0002031,9.27e-10,120;CL:0000134,3.21e-09,354;CL:0000775,5.94e-09,3;CL:0002320,6.38e-09,361;CL:0000081,7.05e-09,11;CL:0000219,7.21e-08,386;CL:0000048,2.48e-07,427;CL:0000723,3.84e-07,433;CL:0000034,6.77e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.41e-20;42!CL:0000049;2.44e-11;108 | |ontology_enrichment_development_v019=CL:0002057;4.41e-20;42!CL:0000049;2.44e-11;108 | ||
|ontology_enrichment_disease=DOID:8692!6.11e-08!31 | |ontology_enrichment_disease=DOID:8692!6.11e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;3.52e-13;31!DOID:1240;2.44e-08;39!DOID:630;9.23e-07;1!DOID:0050177;9.23e-07;1!DOID:0050427;9.23e-07;1 | |ontology_enrichment_disease_v019=DOID:8692;3.52e-13;31!DOID:1240;2.44e-08;39!DOID:630;9.23e-07;1!DOID:0050177;9.23e-07;1!DOID:0050427;9.23e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,4.69e-13,31;DOID:1240,4.50e-10,39;DOID:2531,2.33e-07,51;DOID:0060083,2.33e-07,51;DOID:630,8.02e-07,1;DOID:0050177,8.02e-07,1;DOID:0050427,8.02e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.26e-30!102;UBERON:0003061!5.26e-30!102;UBERON:0002371!8.43e-29!80;UBERON:0002193!1.97e-28!112;UBERON:0001474!7.76e-26!86;UBERON:0004765!5.21e-20!101;UBERON:0001434!5.21e-20!101;UBERON:0002405!7.22e-20!115;UBERON:0002204!3.68e-09!167;UBERON:0003081!1.01e-08!216;UBERON:0002384!3.51e-08!375 | |ontology_enrichment_uberon=UBERON:0002390!5.26e-30!102;UBERON:0003061!5.26e-30!102;UBERON:0002371!8.43e-29!80;UBERON:0002193!1.97e-28!112;UBERON:0001474!7.76e-26!86;UBERON:0004765!5.21e-20!101;UBERON:0001434!5.21e-20!101;UBERON:0002405!7.22e-20!115;UBERON:0002204!3.68e-09!167;UBERON:0003081!1.01e-08!216;UBERON:0002384!3.51e-08!375 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.21e-17,76;UBERON:0002390,3.16e-16,98;UBERON:0003061,3.16e-16,98;UBERON:0001474,7.31e-16,82;UBERON:0002193,2.30e-14,108;UBERON:0004765,3.78e-14,90;UBERON:0002405,1.40e-13,93;UBERON:0001434,2.17e-12,100;UBERON:0002384,1.63e-08,371;UBERON:0002204,5.48e-07,167 | |||
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|short_description=p10@TNFSF13B | |short_description=p10@TNFSF13B | ||
}} | }} |
Latest revision as of 11:08, 16 September 2015
Short description: | p10@TNFSF13B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_TNFSF13B_5end |
Coexpression cluster: | C1186_acute_Neutrophils_CD14_Eosinophils_Whole_Smooth_granulocyte |
Association with transcript: | -100bp_to_ENST00000479435_5end |
EntrezGene: | TNFSF13B |
HGNC: | 11929 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 8.78e-41 | 108 |
common myeloid progenitor | 8.78e-41 | 108 |
hematopoietic oligopotent progenitor cell | 1.59e-27 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-27 | 161 |
classical monocyte | 7.66e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.66e-27 | 42 |
myeloid leukocyte | 7.89e-27 | 72 |
defensive cell | 1.50e-26 | 48 |
phagocyte | 1.50e-26 | 48 |
hematopoietic stem cell | 3.89e-26 | 168 |
hematopoietic cell | 1.65e-24 | 177 |
monopoietic cell | 1.49e-20 | 59 |
monocyte | 1.49e-20 | 59 |
monoblast | 1.49e-20 | 59 |
promonocyte | 1.49e-20 | 59 |
granulocyte monocyte progenitor cell | 3.62e-20 | 67 |
macrophage dendritic cell progenitor | 8.86e-20 | 61 |
myeloid lineage restricted progenitor cell | 4.78e-18 | 66 |
leukocyte | 9.92e-14 | 136 |
eosinophil | 5.24e-13 | 2 |
granulocyte | 3.48e-12 | 8 |
nongranular leukocyte | 2.48e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 9.27e-10 | 120 |
mesenchymal cell | 3.21e-09 | 354 |
neutrophil | 5.94e-09 | 3 |
connective tissue cell | 6.38e-09 | 361 |
blood cell | 7.05e-09 | 11 |
motile cell | 7.21e-08 | 386 |
multi fate stem cell | 2.48e-07 | 427 |
somatic stem cell | 3.84e-07 | 433 |
stem cell | 6.77e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.21e-17 | 76 |
hematopoietic system | 3.16e-16 | 98 |
blood island | 3.16e-16 | 98 |
bone element | 7.31e-16 | 82 |
hemolymphoid system | 2.30e-14 | 108 |
skeletal element | 3.78e-14 | 90 |
immune system | 1.40e-13 | 93 |
skeletal system | 2.17e-12 | 100 |
connective tissue | 1.63e-08 | 371 |
musculoskeletal system | 5.48e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.69e-13 | 31 |
leukemia | 4.50e-10 | 39 |
hematologic cancer | 2.33e-07 | 51 |
immune system cancer | 2.33e-07 | 51 |
genetic disease | 8.02e-07 | 1 |
monogenic disease | 8.02e-07 | 1 |
xeroderma pigmentosum | 8.02e-07 | 1 |