FFCP PHASE1:Hg19::chr1:12185997..12186018,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=943 | |EntrezGene=943 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11923 | |HGNC=11923 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=6bp_to_ENST00000479933_5end | |association_with_transcript=6bp_to_ENST00000479933_5end | ||
|cluster_id=chr1:12185997..12186018,+ | |||
|coexpression_cluster_id=C92 | |coexpression_cluster_id=C92 | ||
|description=CAGE_peak_5_at_TNFRSF8_5end | |description=CAGE_peak_5_at_TNFRSF8_5end | ||
|id=chr1:12185997..12186018,+ | |id=chr1:12185997..12186018,+ | ||
|ontology_enrichment_celltype=CL:0002057!8.42e-59!42;CL:0000766!3.60e-55!76;CL:0000860!7.75e-54!45;CL:0000738!5.01e-49!140;CL:0002009!1.04e-46!65;CL:0002194!1.05e-46!63;CL:0000576!1.05e-46!63;CL:0000040!1.05e-46!63;CL:0000559!1.05e-46!63;CL:0000557!2.83e-43!71;CL:0000839!2.62e-42!70;CL:0000763!3.18e-42!112;CL:0000049!3.18e-42!112;CL:0000037!7.57e-40!172;CL:0000566!7.57e-40!172;CL:0000988!2.67e-37!182;CL:0002087!4.40e-36!119;CL:0002032!7.02e-36!165;CL:0000837!7.02e-36!165;CL:0002031!3.85e-32!124;CL:0000094!3.83e-13!8;CL:0002393!6.80e-12!9;CL:0002397!6.80e-12!9;CL:0000081!5.33e-09!11;CL:0000134!1.76e-08!358;CL:0002320!6.26e-08!365;CL:0000451!9.54e-07!10 | |ontology_enrichment_celltype=CL:0002057!8.42e-59!42;CL:0000766!3.60e-55!76;CL:0000860!7.75e-54!45;CL:0000738!5.01e-49!140;CL:0002009!1.04e-46!65;CL:0002194!1.05e-46!63;CL:0000576!1.05e-46!63;CL:0000040!1.05e-46!63;CL:0000559!1.05e-46!63;CL:0000557!2.83e-43!71;CL:0000839!2.62e-42!70;CL:0000763!3.18e-42!112;CL:0000049!3.18e-42!112;CL:0000037!7.57e-40!172;CL:0000566!7.57e-40!172;CL:0000988!2.67e-37!182;CL:0002087!4.40e-36!119;CL:0002032!7.02e-36!165;CL:0000837!7.02e-36!165;CL:0002031!3.85e-32!124;CL:0000094!3.83e-13!8;CL:0002393!6.80e-12!9;CL:0002397!6.80e-12!9;CL:0000081!5.33e-09!11;CL:0000134!1.76e-08!358;CL:0002320!6.26e-08!365;CL:0000451!9.54e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.12e-82;33!CL:0002057;3.12e-82;33!CL:0000576;1.24e-59;48!CL:0000473;2.76e-55;39!CL:0000234;2.76e-55;39!CL:0000766;9.32e-45;69!CL:0000094;5.27e-26;8!CL:0000763;1.09e-19;100!CL:0000081;1.59e-18;11!CL:0002087;1.23e-15;104!CL:0002393;3.96e-14;6!CL:0002397;3.96e-14;6!CL:0000738;4.04e-12;136!CL:0000875;6.16e-12;3!CL:0002396;6.16e-12;3!CL:0000775;3.92e-11;3!CL:0000767;3.21e-10;3!CL:0000226;1.08e-09;3!CL:0000842;1.08e-09;3!CL:0000771;4.16e-08;2!CL:0000988;1.85e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.36e-113,42;CL:0002057,8.36e-113,42;CL:0000473,1.91e-97,48;CL:0000234,1.91e-97,48;CL:0000766,1.35e-91,72;CL:0002194,6.07e-76,59;CL:0000576,6.07e-76,59;CL:0000040,6.07e-76,59;CL:0000559,6.07e-76,59;CL:0002009,3.61e-73,61;CL:0000839,5.88e-67,66;CL:0000557,7.98e-66,67;CL:0000763,1.32e-57,108;CL:0000049,1.32e-57,108;CL:0000738,5.32e-50,136;CL:0002087,1.22e-40,115;CL:0000037,2.56e-38,168;CL:0000988,8.64e-36,177;CL:0002032,4.71e-35,161;CL:0000837,4.71e-35,161;CL:0002031,1.31e-32,120;CL:0000094,4.26e-26,8;CL:0002393,5.43e-24,9;CL:0002397,5.43e-24,9;CL:0000081,1.37e-18,11;CL:0000134,3.83e-12,354;CL:0000875,6.16e-12,3;CL:0002396,6.16e-12,3;CL:0002320,1.10e-11,361;CL:0000775,3.99e-11,3;CL:0000767,2.56e-10,3;CL:0000219,4.43e-10,386;CL:0000226,1.04e-09,3;CL:0000842,1.04e-09,3;CL:0000048,3.95e-08,427;CL:0000771,4.16e-08,2;CL:0000723,7.32e-08,433;CL:0000034,1.62e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.06e-81;42!CL:0000049;1.03e-17;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.06e-52!102;UBERON:0003061!2.06e-52!102;UBERON:0002193!3.17e-47!112;UBERON:0002371!1.66e-36!80;UBERON:0001474!8.58e-33!86;UBERON:0002405!5.66e-27!115;UBERON:0004765!1.75e-25!101;UBERON:0001434!1.75e-25!101;UBERON:0003081!1.92e-19!216;UBERON:0000178!1.80e-15!15;UBERON:0000179!1.80e-15!15;UBERON:0000463!1.80e-15!15;UBERON:0002204!1.11e-10!167;UBERON:0007023!4.27e-10!115;UBERON:0002384!1.28e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!2.06e-52!102;UBERON:0003061!2.06e-52!102;UBERON:0002193!3.17e-47!112;UBERON:0002371!1.66e-36!80;UBERON:0001474!8.58e-33!86;UBERON:0002405!5.66e-27!115;UBERON:0004765!1.75e-25!101;UBERON:0001434!1.75e-25!101;UBERON:0003081!1.92e-19!216;UBERON:0000178!1.80e-15!15;UBERON:0000179!1.80e-15!15;UBERON:0000463!1.80e-15!15;UBERON:0002204!1.11e-10!167;UBERON:0007023!4.27e-10!115;UBERON:0002384!1.28e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.78e-28;15!UBERON:0000179;3.78e-28;15!UBERON:0000463;3.78e-28;15!UBERON:0002390;2.88e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.20e-76,98;UBERON:0003061,2.20e-76,98;UBERON:0002193,2.68e-68,108;UBERON:0002371,5.90e-57,76;UBERON:0001474,4.11e-52,82;UBERON:0004765,1.19e-46,90;UBERON:0002405,7.68e-45,93;UBERON:0001434,4.86e-41,100;UBERON:0003081,5.24e-31,203;UBERON:0000178,3.51e-28,15;UBERON:0000179,3.51e-28,15;UBERON:0000463,3.51e-28,15;UBERON:0002204,9.85e-21,167;UBERON:0000926,7.66e-16,315;UBERON:0004120,7.66e-16,315;UBERON:0006603,7.66e-16,315;UBERON:0002384,8.51e-12,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,4.72037132218685,1.91914699048606,4.64448369948228,0,0,0,0,0,0,0,2.20598892217156,1.51907609501096,0.671746422719773,0.971680998056939,0,20.5011516679186,12.0920301980419,16.2531320995837,12.3187389560013,6.57868620834921,4.64559556342655,2.01384674625505,1.5369642391746,1.41889337933151,4.48169384957604,5.16387746867061,9.47985406160392,18.4477492751753,10.643339852256,8.31476892446813,9.79468455586888,8.66508373105453,8.31138263538754,0.989553900560148,1.79517291859469,0.852449501065388,3.19230162491442,1.13477044938228,3.11411124497787,2.51248665256743,2.60741459210101,1.73751075764093,3.63239701580021,2.94622108790052,4.1140110367315,18.167954622827,19.9848041967141,13.6278119580444,5.95341745076424,9.6113211418564,4.50031642751824,41.0418350987398,45.3530024013925,32.5142193701048,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0,1.17030546773475,0.32592226663359,0,0,0,0.294605907474837,0,0,0.128091319725675,0.650296737799391,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.383959833463255,0,0.710331756132051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0.132957960518865,0.953962497221368,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,15.8136500923276,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4860983352606,5.9832291840805,8.28831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,2.37285620900479,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,2.53723804616085,3.0585488285695,6.26611905891579,2.1440859791201,4.11362273086194,5.18778648954174,4.86028293514303,3.96562588147135,0,0,0,0,0,0,0,0,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,1.31857361344705,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0.558564802544508,0,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.236417121897595,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,2.07119527673598,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.392616934229891,0.297046400327086,0,0,0.375935671919414,0.515663103788617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0.258355639344024,0.124149428591716,0,0,0,0.217716747896961,0,0.134704106029175,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,4.72037132218685,1.91914699048606,4.64448369948228,0,0,0,0,0,0,0,2.20598892217156,1.51907609501096,0.671746422719773,0.971680998056939,0,20.5011516679186,12.0920301980419,16.2531320995837,12.3187389560013,6.57868620834921,4.64559556342655,2.01384674625505,1.5369642391746,1.41889337933151,4.48169384957604,5.16387746867061,9.47985406160392,18.4477492751753,10.643339852256,8.31476892446813,9.79468455586888,8.66508373105453,8.31138263538754,0.989553900560148,1.79517291859469,0.852449501065388,3.19230162491442,1.13477044938228,3.11411124497787,2.51248665256743,2.60741459210101,1.73751075764093,3.63239701580021,2.94622108790052,4.1140110367315,18.167954622827,19.9848041967141,13.6278119580444,5.95341745076424,9.6113211418564,4.50031642751824,41.0418350987398,45.3530024013925,32.5142193701048,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0,1.17030546773475,0.32592226663359,0,0,0,0.294605907474837,0,0,0.128091319725675,0.650296737799391,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.383959833463255,0,0.710331756132051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0.132957960518865,0.953962497221368,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,15.8136500923276,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4860983352606,5.9832291840805,8.28831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,2.37285620900479,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,2.53723804616085,3.0585488285695,6.26611905891579,2.1440859791201,4.11362273086194,5.18778648954174,4.86028293514303,3.96562588147135,0,0,0,0,0,0,0,0,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,1.31857361344705,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0.558564802544508,0,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.236417121897595,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,2.07119527673598,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.265729680626726,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0,0,0,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0.392616934229891,0.297046400327086,0,0,0.375935671919414,0.515663103788617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0.258355639344024,0.124149428591716,0,0,0,0.217716747896961,0,0.134704106029175,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p5@TNFRSF8 | |short_description=p5@TNFRSF8 | ||
}} | }} |
Latest revision as of 13:26, 16 September 2015
Short description: | p5@TNFRSF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNFRSF8_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 6bp_to_ENST00000479933_5end |
EntrezGene: | TNFRSF8 |
HGNC: | 11923 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.20e-76 | 98 |
blood island | 2.20e-76 | 98 |
hemolymphoid system | 2.68e-68 | 108 |
bone marrow | 5.90e-57 | 76 |
bone element | 4.11e-52 | 82 |
skeletal element | 1.19e-46 | 90 |
immune system | 7.68e-45 | 93 |
skeletal system | 4.86e-41 | 100 |
lateral plate mesoderm | 5.24e-31 | 203 |
blood | 3.51e-28 | 15 |
haemolymphatic fluid | 3.51e-28 | 15 |
organism substance | 3.51e-28 | 15 |
musculoskeletal system | 9.85e-21 | 167 |
mesoderm | 7.66e-16 | 315 |
mesoderm-derived structure | 7.66e-16 | 315 |
presumptive mesoderm | 7.66e-16 | 315 |
connective tissue | 8.51e-12 | 371 |