FFCP PHASE1:Hg19::chr6:160113879..160113887,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-197bp_to_ENST00000540491_5end | |||
|cluster_id=chr6:160113879..160113887,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_27_at_SOD2_5end | |||
|id=chr6:160113879..160113887,- | |||
|ontology_enrichment_celltype=CL:0002057!4.40e-26!42;CL:0000860!2.19e-23!45;CL:0000766!3.43e-19!76;CL:0002194!1.25e-18!63;CL:0000576!1.25e-18!63;CL:0000040!1.25e-18!63;CL:0000559!1.25e-18!63;CL:0002009!1.32e-17!65;CL:0000839!4.00e-16!70;CL:0000557!1.08e-15!71;CL:0000763!3.93e-09!112;CL:0000049!3.93e-09!112;CL:0002087!1.52e-07!119;CL:0000738!2.55e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.89e-77;33!CL:0002057;5.89e-77;33!CL:0000473;5.89e-61;39!CL:0000234;5.89e-61;39!CL:0000576;2.26e-35;48!CL:0000766;2.54e-26;69!CL:0000763;6.83e-13;100!CL:0000775;1.46e-11;3!CL:0002087;1.84e-09;104!CL:0000738;3.05e-08;136!CL:0000094;2.44e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.54e-69,42;CL:0002057,1.54e-69,42;CL:0000473,5.01e-68,48;CL:0000234,5.01e-68,48;CL:0000766,2.01e-54,72;CL:0002194,9.89e-53,59;CL:0000576,9.89e-53,59;CL:0000040,9.89e-53,59;CL:0000559,9.89e-53,59;CL:0002009,9.29e-51,61;CL:0000839,2.42e-46,66;CL:0000557,1.55e-45,67;CL:0000763,2.10e-33,108;CL:0000049,2.10e-33,108;CL:0000738,1.03e-24,136;CL:0002087,2.97e-23,115;CL:0002031,5.90e-22,120;CL:0002032,1.66e-19,161;CL:0000837,1.66e-19,161;CL:0000037,2.49e-18,168;CL:0000988,5.94e-17,177;CL:0000775,1.72e-11,3;CL:0000048,4.04e-10,427;CL:0000723,8.02e-10,433;CL:0000034,1.94e-09,441;CL:0000134,5.49e-09,354;CL:0002320,1.28e-08,361;CL:0000219,2.45e-07,386;CL:0000094,2.52e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;8.70e-52;42!CL:0000049;1.85e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.02e-15!115;UBERON:0002371!5.09e-15!80;UBERON:0002204!2.01e-14!167;UBERON:0001474!6.17e-13!86;UBERON:0002193!1.17e-12!112;UBERON:0002390!5.44e-12!102;UBERON:0003061!5.44e-12!102;UBERON:0004765!8.26e-12!101;UBERON:0001434!8.26e-12!101;UBERON:0000926!4.75e-08!448;UBERON:0004120!4.75e-08!448;UBERON:0006603!4.75e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.03e-42,76;UBERON:0002405,5.15e-40,93;UBERON:0001474,2.72e-38,82;UBERON:0001434,1.93e-36,100;UBERON:0002193,2.29e-35,108;UBERON:0004765,3.58e-34,90;UBERON:0002390,7.58e-33,98;UBERON:0003061,7.58e-33,98;UBERON:0002204,9.23e-27,167;UBERON:0003081,1.20e-15,203;UBERON:0000926,5.28e-12,315;UBERON:0004120,5.28e-12,315;UBERON:0006603,5.28e-12,315;UBERON:0002384,4.03e-08,371 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,2.53299878168311,0,0.261185628199839,0,0,0,0,0.123766352960047,0,2.01697543935533,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0.273748850145768,0,0,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,1.20326668482085,0.868043482863407,0,0,0.257575567634187,1.16318591023652,1.51150377475524,0.242584061187816,4.88100977501938,2.05583944010913,3.40677007984614,10.9323109082417,5.63553554364021,3.31075121844019,7.58440497620561,4.51839278508678,9.47985406160392,3.01187743268168,2.18324920046277,1.12361742222542,15.3041946185451,2.24650318953266,10.8687311385837,3.62836430205388,2.99195486432448,1.27867425159808,14.8006711700578,7.94339314567596,13.0792672289071,5.27622197039161,2.60741459210101,3.47502151528187,10.2917915447673,2.94622108790052,11.3926459478718,0,0,0,0,0.450530678524519,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0,0.122834317311768,0.206651562351531,0,0.989067717114227,0,0,0,0,0,0,0,1.50238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,1.39310378409594,0.721879481669586,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9313088667105,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.58803092537181,2.77791307545966,3.99533719692656,0,0,0.492434012174795,0.234004265139238,1.0404181360211,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0.299918973546171,0,1.00451418286425,0,0,0,0,0.434343920002738,1.02738161275192,0.358121926479791,0,0,0,0,0,0,0,0,0,2.24702107184155,8.97484377612075,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.320182673410333,0,0,0,0,0,0.280660094433074,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0.524497659837696,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0.154048617114644,0,0.137836572484531,0.214840489736547,0,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0.924100740528266,0,0,0.18532421910392,0.572499546967965,0,0,0.190630193923825,0,1.71175595213568,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,1.31535265576129,0,0,0,0.30982349809975,0,0,0,0,0,2.53329162357197,1.97576935775941,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.70894156152249,0,0,0,0,0.79312517629427,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0.284136146806413,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0.91153644677601,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0.995261931078505,0,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0.347119476670262,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0,0,0,0.600420288709789,0,0,0,0,0,0.229160424011684,2.87149209830726,0.798716001995964,1.28767814440971,0.223171457441873,0.0671834724867263,0,0,0.236349546921671,0.0824158583811665,0.13480708770837,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.630445658393585,0.157363764404994,0,0,0,0.714695326373367,0.662091970365432,0.25426853765475,0.542999601753713,0,0,0,0.082092520749339,0.170388021785422,0,0.732761168390412,1.32506888912221,0.258565912723101,0.13223260174269,0,0,0.213574825135389,0,0.414239055347196,0.992332043623902,0,0,0,0.544017803369474,0,1.22538230705385,0.655745261419609,0,0,0.366078794705889,0.250381861413,0,0.332787154610557,0.124192805882767,0,0,0,0,0.941063278792687,0,0.144921028610825,0,0,0.554805861502613,0.378806010550178,0.251567901752575,1.77962244319307,0.228840068396924,0,0,0.295710299979268,0.159296767163702,3.59842489730884,0,0,0,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0.657852148736121,0.176689145945881,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0.225630985047772,0,1.56302802246618,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0.227662191351298,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0.9555033757741,0,0,0,0,0,0.828864656652147,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,2.58971534875158,1.53994210284371,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0.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| |||
|short_description=p27@SOD2 | |||
}} |
Latest revision as of 14:45, 16 September 2015
Short description: | p27@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -197bp_to_ENST00000540491_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.54e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.54e-69 | 42 |
defensive cell | 5.01e-68 | 48 |
phagocyte | 5.01e-68 | 48 |
myeloid leukocyte | 2.01e-54 | 72 |
monopoietic cell | 9.89e-53 | 59 |
monocyte | 9.89e-53 | 59 |
monoblast | 9.89e-53 | 59 |
promonocyte | 9.89e-53 | 59 |
macrophage dendritic cell progenitor | 9.29e-51 | 61 |
myeloid lineage restricted progenitor cell | 2.42e-46 | 66 |
granulocyte monocyte progenitor cell | 1.55e-45 | 67 |
myeloid cell | 2.10e-33 | 108 |
common myeloid progenitor | 2.10e-33 | 108 |
leukocyte | 1.03e-24 | 136 |
nongranular leukocyte | 2.97e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 5.90e-22 | 120 |
hematopoietic oligopotent progenitor cell | 1.66e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.66e-19 | 161 |
hematopoietic stem cell | 2.49e-18 | 168 |
hematopoietic cell | 5.94e-17 | 177 |
neutrophil | 1.72e-11 | 3 |
multi fate stem cell | 4.04e-10 | 427 |
somatic stem cell | 8.02e-10 | 433 |
stem cell | 1.94e-09 | 441 |
mesenchymal cell | 5.49e-09 | 354 |
connective tissue cell | 1.28e-08 | 361 |
motile cell | 2.45e-07 | 386 |
granulocyte | 2.52e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.03e-42 | 76 |
immune system | 5.15e-40 | 93 |
bone element | 2.72e-38 | 82 |
skeletal system | 1.93e-36 | 100 |
hemolymphoid system | 2.29e-35 | 108 |
skeletal element | 3.58e-34 | 90 |
hematopoietic system | 7.58e-33 | 98 |
blood island | 7.58e-33 | 98 |
musculoskeletal system | 9.23e-27 | 167 |
lateral plate mesoderm | 1.20e-15 | 203 |
mesoderm | 5.28e-12 | 315 |
mesoderm-derived structure | 5.28e-12 | 315 |
presumptive mesoderm | 5.28e-12 | 315 |
connective tissue | 4.03e-08 | 371 |