FFCP PHASE1:Hg19::chr13:20763282..20763295,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2706 | |EntrezGene=2706 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4284 | |HGNC=4284 | ||
|TSSclassifier=strong | |||
|UniProt=P29033 | |UniProt=P29033 | ||
|association_with_transcript=424bp_to_AB463667,BT006732,CU677811,DQ891797,DQ894980_5end | |association_with_transcript=424bp_to_AB463667,BT006732,CU677811,DQ891797,DQ894980_5end | ||
|cluster_id=chr13:20763282..20763295,- | |||
|coexpression_cluster_id=C1702 | |||
|description=CAGE_peak_6_at_GJB2_5end | |description=CAGE_peak_6_at_GJB2_5end | ||
|id=chr13:20763282..20763295,- | |id=chr13:20763282..20763295,- | ||
|ontology_enrichment_celltype=CL:0002368!8.55e-20!13;CL:0002076!2.76e-16!43;CL:0000223!5.09e-15!59;CL:0000244!1.50e-12!4;CL:0000731!1.50e-12!4;CL:0002202!4.47e-11!9;CL:0002632!4.47e-11!9;CL:0002328!1.45e-09!3;CL:0000068!3.52e-09!3;CL:0000069!3.52e-09!3;CL:0000307!3.52e-09!3;CL:0000377!3.52e-09!3;CL:0002159!2.18e-07!13;CL:0000575!4.89e-07!2 | |ontology_enrichment_celltype=CL:0002368!8.55e-20!13;CL:0002076!2.76e-16!43;CL:0000223!5.09e-15!59;CL:0000244!1.50e-12!4;CL:0000731!1.50e-12!4;CL:0002202!4.47e-11!9;CL:0002632!4.47e-11!9;CL:0002328!1.45e-09!3;CL:0000068!3.52e-09!3;CL:0000069!3.52e-09!3;CL:0000307!3.52e-09!3;CL:0000377!3.52e-09!3;CL:0002159!2.18e-07!13;CL:0000575!4.89e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.89e-37;4!CL:0000731;1.89e-37;4!CL:0000575;3.59e-19;2!CL:0002328;4.15e-13;3!CL:0002368;1.57e-11;13!CL:0002336;2.74e-10;1!CL:0002261;2.74e-10;1!CL:0002170;2.74e-10;1!CL:0002202;9.86e-10;9!CL:0002632;9.86e-10;9!CL:0002076;6.18e-09;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.18e-37,4;CL:0000731,2.18e-37,4;CL:0000575,2.17e-19,2;CL:0002328,2.97e-13,3;CL:0002368,1.43e-11,13;CL:0002336,2.50e-10,1;CL:0002261,2.50e-10,1;CL:0002170,2.50e-10,1;CL:0002076,6.02e-10,42;CL:0002202,8.75e-10,9;CL:0002632,8.75e-10,9;CL:0000223,4.73e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.74e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!5.11e-10!5;UBERON:0004815!1.45e-09!3;UBERON:0002031!1.45e-09!3;UBERON:0007196!7.37e-09!14;UBERON:0001558!7.37e-09!14;UBERON:0005910!2.51e-08!6;UBERON:0004119!2.55e-07!169;UBERON:0000925!2.55e-07!169;UBERON:0006595!2.55e-07!169;UBERON:0002185!3.03e-07!4;UBERON:0000065!9.51e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.90e-30;5!UBERON:0005910;4.36e-25;6!UBERON:0000486;3.77e-19;12!UBERON:0004815;4.15e-13;3!UBERON:0002031;4.15e-13;3!UBERON:0000964;4.65e-10;4!UBERON:0010409;4.65e-10;4!UBERON:0005911;2.18e-09;36!UBERON:0002185;3.21e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,5.49e-30,5;UBERON:0005910,4.79e-25,6;UBERON:0004815,2.97e-13,3;UBERON:0002031,2.97e-13,3;UBERON:0000964,3.62e-10,4;UBERON:0010409,3.62e-10,4;UBERON:0004348,3.62e-10,4;UBERON:0005427,3.62e-10,4;UBERON:0004119,9.66e-09,160;UBERON:0000925,9.66e-09,160;UBERON:0006595,9.66e-09,160;UBERON:0002185,2.63e-08,5;UBERON:0005911,8.36e-08,82 | |||
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| ||
|short_description=p6@GJB2 | |short_description=p6@GJB2 | ||
}} | }} |
Latest revision as of 18:45, 16 September 2015
Short description: | p6@GJB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GJB2_5end |
Coexpression cluster: | C1702_Urothelial_Bronchial_Corneal_Sebocyte_Tracheal_Esophageal_Gingival |
Association with transcript: | 424bp_to_AB463667, BT006732, CU677811, DQ891797, DQ894980_5end |
EntrezGene: | GJB2 |
HGNC: | 4284 |
UniProt: | P29033 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.18e-37 | 4 |
urothelial cell | 2.18e-37 | 4 |
corneal epithelial cell | 2.17e-19 | 2 |
bronchial epithelial cell | 2.97e-13 | 3 |
respiratory epithelial cell | 1.43e-11 | 13 |
buccal mucosa cell | 2.50e-10 | 1 |
endothelial cell of viscerocranial mucosa | 2.50e-10 | 1 |
keratinized cell of the oral mucosa | 2.50e-10 | 1 |
endo-epithelial cell | 6.02e-10 | 42 |
epithelial cell of tracheobronchial tree | 8.75e-10 | 9 |
epithelial cell of lower respiratory tract | 8.75e-10 | 9 |
endodermal cell | 4.73e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
urothelium | 5.49e-30 | 5 |
transitional epithelium | 4.79e-25 | 6 |
lower respiratory tract epithelium | 2.97e-13 | 3 |
epithelium of bronchus | 2.97e-13 | 3 |
cornea | 3.62e-10 | 4 |
eye surface | 3.62e-10 | 4 |
optic eminence | 3.62e-10 | 4 |
corneal primordium | 3.62e-10 | 4 |
endoderm-derived structure | 9.66e-09 | 160 |
endoderm | 9.66e-09 | 160 |
presumptive endoderm | 9.66e-09 | 160 |
bronchus | 2.63e-08 | 5 |
endo-epithelium | 8.36e-08 | 82 |