FFCP PHASE1:Hg19::chr7:150006580..150006590,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65999 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21704 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-39bp_to_uc003wgv.2_5end | |||
|cluster_id=chr7:150006580..150006590,+ | |||
|coexpression_cluster_id=C412 | |||
|description=CAGE_peak_6_at_LRRC61_5end | |||
|id=chr7:150006580..150006590,+ | |||
|ontology_enrichment_celltype=CL:1000507!1.61e-27!12;CL:1000494!1.61e-27!12;CL:0000239!1.35e-21!3;CL:1000615!1.35e-21!3;CL:0002306!1.35e-21!3;CL:1000449!1.88e-20!16;CL:0002149!1.11e-19!6;CL:0002255!1.11e-19!6;CL:0002681!1.02e-18!13;CL:0002584!1.02e-18!13;CL:1000497!4.30e-18!18;CL:0002518!4.30e-18!18;CL:0000159!1.19e-14!2;CL:0000313!2.50e-08!1;CL:0000319!5.07e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0002149;3.67e-66;6!CL:0002255;3.67e-66;6!CL:0000499;1.15e-14;28!CL:0000239;1.60e-09;3!CL:1000615;1.60e-09;3!CL:0002306;1.60e-09;3!CL:0002076;7.54e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,3.67e-66,6;CL:0002255,3.67e-66,6;CL:0000499,1.15e-14,28;CL:0002076,6.28e-10,42;CL:0000239,1.67e-09,3;CL:1000615,1.67e-09,3;CL:0002306,1.67e-09,3;CL:0000223,2.72e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0005795;9.33e-62;10 | |||
|ontology_enrichment_disease=DOID:3001!1.11e-19!6;DOID:120!4.32e-12!27;DOID:193!3.37e-11!29;DOID:299!9.12e-10!25;DOID:2152!2.50e-08!1;DOID:3030!5.07e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3001;3.67e-66;6!DOID:299;2.29e-16;25!DOID:120;3.42e-15;27!DOID:193;3.53e-14;29 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,3.67e-66,6;DOID:299,2.29e-16,25;DOID:120,3.42e-15,27;DOID:193,3.53e-14,29 | |||
|ontology_enrichment_uberon=UBERON:0009773!1.61e-27!12;UBERON:0001231!1.61e-27!12;UBERON:0004810!1.61e-27!12;UBERON:0002113!4.88e-24!27;UBERON:0003918!4.88e-24!27;UBERON:0005095!4.88e-24!27;UBERON:0007687!4.88e-24!27;UBERON:0006853!1.35e-21!3;UBERON:0007685!1.35e-21!3;UBERON:0004134!1.35e-21!3;UBERON:0004211!1.88e-20!16;UBERON:0001285!1.88e-20!16;UBERON:0007684!1.88e-20!16;UBERON:0003220!1.88e-20!16;UBERON:0004208!1.88e-20!16;UBERON:0000489!5.06e-20!32;UBERON:0006555!3.33e-19!17;UBERON:0005103!3.33e-19!17;UBERON:0000083!3.33e-19!17;UBERON:0009201!3.33e-19!17;UBERON:0004819!3.33e-19!17;UBERON:0006553!3.33e-19!17;UBERON:0003074!3.33e-19!17;UBERON:0003060!3.33e-19!17;UBERON:0001225!1.02e-18!13;UBERON:0008987!1.02e-18!13;UBERON:0000080!4.30e-18!18;UBERON:0002120!4.30e-18!18;UBERON:0004875!4.30e-18!18;UBERON:0005721!4.30e-18!18;UBERON:0005754!4.30e-18!18;UBERON:0007297!4.30e-18!18;UBERON:0003134!2.61e-17!37;UBERON:0000474!2.61e-17!37;UBERON:0004876!3.32e-16!20;UBERON:0003100!1.87e-15!41;UBERON:0003887!2.14e-15!21;UBERON:0005795!3.03e-15!22;UBERON:0001851!4.05e-15!16;UBERON:0000353!3.35e-14!17;UBERON:0006554!4.19e-14!44;UBERON:0001008!9.39e-14!45;UBERON:0003133!5.92e-13!48;UBERON:0000058!2.80e-12!26;UBERON:0000995!7.43e-12!21;UBERON:0003975!2.72e-11!22;UBERON:0003886!2.89e-11!63;UBERON:0005172!6.01e-11!55;UBERON:0005173!6.01e-11!55;UBERON:0005156!3.19e-10!59;UBERON:0000990!3.19e-10!59;UBERON:0002553!6.02e-10!70;UBERON:0004175!7.19e-10!25;UBERON:0002417!1.05e-09!61;UBERON:0000916!1.05e-09!61;UBERON:0006834!1.31e-08!1;UBERON:0000992!1.36e-08!13;UBERON:0003103!2.18e-08!69;UBERON:0003064!2.21e-08!37;UBERON:0004911!2.50e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000995;1.37e-36;17!UBERON:0003975;1.38e-34;18!UBERON:0004175;1.03e-29;21!UBERON:0005795;4.61e-26;1!UBERON:0006834;5.93e-26;1!UBERON:0003134;4.72e-18;33!UBERON:0000474;4.38e-15;37!UBERON:0003100;3.28e-12;41!UBERON:0003133;9.44e-10;44!UBERON:0006853;1.60e-09;3!UBERON:0007685;1.60e-09;3!UBERON:0004134;1.60e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005795,1.63e-40,22;UBERON:0000995,1.03e-29,21;UBERON:0003975,2.20e-28,22;UBERON:0006834,5.93e-26,1;UBERON:0004175,4.98e-25,25;UBERON:0003134,4.93e-17,37;UBERON:0000474,4.93e-17,37;UBERON:0003100,2.10e-15,41;UBERON:0003133,3.36e-13,48;UBERON:0005156,8.72e-11,59;UBERON:0000990,8.72e-11,59;UBERON:0006853,1.67e-09,3;UBERON:0007685,1.67e-09,3;UBERON:0004134,1.67e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902399225814824,0.15403067420883,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,2.0148727924996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7996963935492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67939404817274,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.537052785212442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,144.556175719573,33.4438628642102,0.671132590786754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42276043712026,6.10344267473608,0,0,0 | |||
|short_description=p6@LRRC61 | |||
}} |
Latest revision as of 02:35, 17 September 2015
Short description: | p6@LRRC61 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRRC61_5end |
Coexpression cluster: | C412_serous_breast_papillotubular_ductus_seminal_kidney_clear |
Association with transcript: | -39bp_to_uc003wgv.2_5end |
EntrezGene: | LRRC61 |
HGNC: | 21704 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 3.67e-66 | 6 |
stromal cell of endometrium | 3.67e-66 | 6 |
stromal cell | 1.15e-14 | 28 |
endo-epithelial cell | 6.28e-10 | 42 |
brush border epithelial cell | 1.67e-09 | 3 |
kidney cortex tubule cell | 1.67e-09 | 3 |
epithelial cell of proximal tubule | 1.67e-09 | 3 |
endodermal cell | 2.72e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
embryonic uterus | 1.63e-40 | 22 |
uterus | 1.03e-29 | 21 |
internal female genitalia | 2.20e-28 | 22 |
uterus or analog | 5.93e-26 | 1 |
internal genitalia | 4.98e-25 | 25 |
female reproductive organ | 4.93e-17 | 37 |
female reproductive system | 4.93e-17 | 37 |
female organism | 2.10e-15 | 41 |
reproductive organ | 3.36e-13 | 48 |
reproductive structure | 8.72e-11 | 59 |
reproductive system | 8.72e-11 | 59 |
renal cortex tubule | 1.67e-09 | 3 |
region of nephron tubule | 1.67e-09 | 3 |
proximal tubule | 1.67e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 3.67e-66 | 6 |
adenocarcinoma | 2.29e-16 | 25 |
female reproductive organ cancer | 3.42e-15 | 27 |
reproductive organ cancer | 3.53e-14 | 29 |