FFCP PHASE1:Hg19::chr17:72428266..72428277,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:72428266..72428277,+ to FFCP PHASE1:Hg19::chr17:72428266..72428277,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55890 | |EntrezGene=55890 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13309 | |HGNC=13309 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NXI0 | |UniProt=Q9NXI0 | ||
|association_with_transcript=11bp_to_ENST00000262616_5end | |||
|cluster_id=chr17:72428266..72428277,+ | |||
|coexpression_cluster_id=C2434 | |||
|description=CAGE_peak_6_at_GPRC5C_5end | |||
|id=chr17:72428266..72428277,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.21e-16!254;CL:0000223!2.67e-12!59;CL:0002076!8.75e-10!43 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.06e-14;10!CL:1000494;1.06e-14;10!CL:1000497;1.45e-10;17!CL:0002518;1.45e-10;17!CL:0000239;1.65e-10;3!CL:1000615;1.65e-10;3!CL:0002306;1.65e-10;3!CL:1000449;1.96e-09;15!CL:0002681;8.47e-09;12!CL:0002584;8.47e-09;12!CL:0000244;1.52e-07;4!CL:0000731;1.52e-07;4!CL:0000159;6.64e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,9.25e-15,10;CL:1000494,9.25e-15,10;CL:1000497,1.17e-10,17;CL:0002518,1.17e-10,17;CL:0000239,1.73e-10,3;CL:1000615,1.73e-10,3;CL:0002306,1.73e-10,3;CL:1000449,1.80e-09,15;CL:0002681,7.70e-09,12;CL:0002584,7.70e-09,12;CL:0000244,1.18e-07,4;CL:0000731,1.18e-07,4;CL:0000066,2.41e-07,253;CL:0000159,5.09e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.57e-15!106;DOID:0050687!2.66e-11!143;DOID:299!3.66e-11!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.22e-20!169;UBERON:0000925!2.22e-20!169;UBERON:0006595!2.22e-20!169;UBERON:0004921!7.12e-19!129;UBERON:0004185!7.12e-19!129;UBERON:0001007!3.12e-18!155;UBERON:0001555!3.12e-18!155;UBERON:0007026!3.12e-18!155;UBERON:0000077!1.34e-15!130;UBERON:0001041!1.17e-14!98;UBERON:0000466!1.87e-14!126;UBERON:0005911!2.20e-12!82;UBERON:0005177!4.53e-12!107;UBERON:0005172!1.13e-11!55;UBERON:0005173!1.13e-11!55;UBERON:0001048!2.96e-10!168;UBERON:0009569!4.12e-10!113;UBERON:0000481!1.65e-09!347;UBERON:0000464!2.32e-09!104;UBERON:0002417!2.46e-09!61;UBERON:0000916!2.46e-09!61;UBERON:0009856!4.32e-09!26;UBERON:0000062!5.89e-09!511;UBERON:0003929!8.23e-09!54;UBERON:0007499!9.14e-09!25;UBERON:0009497!1.80e-08!25;UBERON:0000015!1.80e-08!25;UBERON:0002423!1.80e-08!25;UBERON:0006235!1.80e-08!25;UBERON:0004161!1.80e-08!25;UBERON:0002365!2.36e-08!31;UBERON:0002330!2.36e-08!31;UBERON:0003104!4.87e-08!238;UBERON:0009142!4.87e-08!238;UBERON:0009854!2.65e-07!23;UBERON:0005409!3.15e-07!35;UBERON:0002530!4.74e-07!59;UBERON:0008835!5.54e-07!22;UBERON:0003894!5.54e-07!22;UBERON:0001008!7.32e-07!45;UBERON:0002553!8.93e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.06e-14;10!UBERON:0009773;1.06e-14;10!UBERON:0001231;1.06e-14;10!UBERON:0004810;1.06e-14;10!UBERON:0006554;1.09e-14;30!UBERON:0001008;1.09e-14;30!UBERON:0002113;3.66e-11;24!UBERON:0011143;3.66e-11;24!UBERON:0006853;1.65e-10;3!UBERON:0007685;1.65e-10;3!UBERON:0004134;1.65e-10;3!UBERON:0006555;1.96e-09;15!UBERON:0004819;1.96e-09;15!UBERON:0001285;1.96e-09;15!UBERON:0007684;1.96e-09;15!UBERON:0005172;2.29e-09;52!UBERON:0005173;2.29e-09;52!UBERON:0000489;6.98e-09;29!UBERON:0001225;8.47e-09;12!UBERON:0008987;8.47e-09;12!UBERON:0001851;6.79e-07;15!UBERON:0000353;6.79e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,9.25e-15,10;UBERON:0005172,1.25e-12,54;UBERON:0005173,1.25e-12,54;UBERON:0006554,2.56e-11,47;UBERON:0001008,5.24e-11,48;UBERON:0002417,5.99e-11,60;UBERON:0000916,5.99e-11,60;UBERON:0006853,1.73e-10,3;UBERON:0007685,1.73e-10,3;UBERON:0004134,1.73e-10,3;UBERON:0002113,3.22e-10,26;UBERON:0003918,3.22e-10,26;UBERON:0011143,3.22e-10,26;UBERON:0005095,3.22e-10,26;UBERON:0007687,3.22e-10,26;UBERON:0004211,1.80e-09,15;UBERON:0009773,1.80e-09,15;UBERON:0001231,1.80e-09,15;UBERON:0001285,1.80e-09,15;UBERON:0007684,1.80e-09,15;UBERON:0004208,1.80e-09,15;UBERON:0005177,2.64e-09,101;UBERON:0001225,7.70e-09,12;UBERON:0008987,7.70e-09,12;UBERON:0006555,8.23e-09,16;UBERON:0004819,8.23e-09,16;UBERON:0005911,1.17e-08,82;UBERON:0000489,3.06e-08,31;UBERON:0007499,3.62e-08,25;UBERON:0009569,7.72e-08,112;UBERON:0009856,8.63e-08,26;UBERON:0001851,6.30e-07,15;UBERON:0000353,6.30e-07,15 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0.204000691244253,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0.486634870302636,0,0,0.175669571386252,1.17881167947941,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0.57978255948989,0,0.286804595389004,0.243947412259191,0.397589304964456,0.69716365721711,0.207322110030741,0.504641701751257,0.72995471815166,0,0,1.38134921352481,0,0,0.354920400119532,0,0.241011029883482,0.330881918197182,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,0,0.8231480226628,1.47008711385542,3.80265104465493,0.982827216677626,2.36315962672562,0,0.737930631258681,0,0.109750285408626,0,0.301586917234893,0.185176890317059,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0.503946384596579,0.567100388969546,0,0,0.383382679165211,0,0.968532774145487,1.86595303986695,2.01767934783746,2.39860623510122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,2.61460037580088,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,1.00253235151642,0,0,0,0,1.80479845162965,1.07821471946181,0,4.38417673959782,0.422206515571503,0,0,0.863663664408557,0,1.35473218771926,0,2.03901018436031,7.47968408035852,1.34324852833307,0,0,1.53870075069834,0.328014645699706,0.325378394664303,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0.178064071293475,0.330569830721956,0,0.382838137483752,0.910420027699949,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,1.69458841398202,1.29151611801369,1.68471475667626,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0.568272293612826,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0.597743964753209,0.276283915531148,0,0,0.123084805461069,0,0,1.07412704805365,0,0.690503839458535,0,0,0,0,0,0.260427761085233,0.962059999958153,0,0.455173793141999,1.01701460117107,0.236387681767936,0,0,0,0,0,0,2.65390223834939,2.36438095162838,0.438770794307945,0,0.557694977114413,0.769502585037971,0.227884111694002,0,0,0,0.31900115973192,0.0915975934018623,0,0,1.2558420511602,0,0,0,0,0,0,0.843992258112108,1.14262965711403,1.13082457147153,0,1.99052386215701,1.06149077404007,1.22206028986725,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0.379119477770928,0.150323419414493,0.311064574191741,0,0.330991955875499,0.313932918407225,0,1.42304773014896,0,0,0.685946781900644,0.783532859223623,0.17472666824203,0,0,0.0730893170861856,0,0.193978032976839,0,1.12990370390266,0,0,0.253243183823515,0.391102765469606,0.320635281006135,1.92107695265417,0.999048047910651,3.45817001169854,0.572682980829578,1.02956998717179,0,0.248505071130865,0,0,0,0.407992870545287,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0.599037001496973,0,0.223171457441873,0.0671834724867263,0,0,0.630265458457789,0.412079291905832,0.943649613958588,1.77169466726548,0,0,0,0,0.137539436597234,0,0.449947783103001,0.77380195455795,0.121499113316049,1.0063040627978,1.33969702408637,3.09482069996489,0,0,0,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0.453248366080503,1.46552233678082,0,0,0.13223260174269,1.02652102730598,0.704815022316672,0.747511887973863,0.314408610199332,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0.1251909307065,0.573409195690071,0.443716206147409,0.310482014706917,0,0.624902039810533,0,0,0.941063278792687,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0.63718706865481,0,0.310525913752519,0,0,1.04349012362347,0.150257608997218,1.90402606084398,0,0,0.966695013382396,0,0,0,0,0.336749488765919,0,0,0.214441591374926,1.30497145982606,0,0,0.489473409012935,0.179088841081487,0,0,0.176689145945881,0.771656153083659,0,1.79369063011563,0,0,0,0.974301544196942,0.531459361253452,1.30852315404675,0,1.2288645437686,0.211312123358627,0,0.106691729694141,0,0,0,0,0,0.127894371303652,0.107824811396682,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0,3.20228299314188,0,0.6124909547064,0,0,0,0,0,0.0691572524642179,0,0,0.785181748008205,0,0,0.231051332300676,0,0,0.795664888465099,0.451261970095544,0,3.12605604493237,0,0,0.443568258651136,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,1.09651553371436,0,0.175871244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| ||
|short_description=p6@GPRC5C | |||
}} | }} |
Latest revision as of 07:31, 17 September 2015
Short description: | p6@GPRC5C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GPRC5C_5end |
Coexpression cluster: | C2434_Renal_pancreas_Hepatocyte_Alveolar_gastric_kidney_nonsmall |
Association with transcript: | 11bp_to_ENST00000262616_5end |
EntrezGene: | GPRC5C |
HGNC: | 13309 |
UniProt: | Q9NXI0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 9.25e-15 | 10 |
nephron tubule epithelial cell | 9.25e-15 | 10 |
kidney cell | 1.17e-10 | 17 |
kidney epithelial cell | 1.17e-10 | 17 |
brush border epithelial cell | 1.73e-10 | 3 |
kidney cortex tubule cell | 1.73e-10 | 3 |
epithelial cell of proximal tubule | 1.73e-10 | 3 |
epithelial cell of nephron | 1.80e-09 | 15 |
kidney cortical cell | 7.70e-09 | 12 |
renal cortical epithelial cell | 7.70e-09 | 12 |
transitional epithelial cell | 1.18e-07 | 4 |
urothelial cell | 1.18e-07 | 4 |
epithelial cell | 2.41e-07 | 253 |
seromucus secreting cell | 5.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 9.25e-15 | 10 |
abdomen element | 1.25e-12 | 54 |
abdominal segment element | 1.25e-12 | 54 |
urinary system structure | 2.56e-11 | 47 |
renal system | 5.24e-11 | 48 |
abdominal segment of trunk | 5.99e-11 | 60 |
abdomen | 5.99e-11 | 60 |
renal cortex tubule | 1.73e-10 | 3 |
region of nephron tubule | 1.73e-10 | 3 |
proximal tubule | 1.73e-10 | 3 |
kidney | 3.22e-10 | 26 |
kidney mesenchyme | 3.22e-10 | 26 |
upper urinary tract | 3.22e-10 | 26 |
kidney rudiment | 3.22e-10 | 26 |
kidney field | 3.22e-10 | 26 |
nephron epithelium | 1.80e-09 | 15 |
renal tubule | 1.80e-09 | 15 |
nephron tubule | 1.80e-09 | 15 |
nephron | 1.80e-09 | 15 |
uriniferous tubule | 1.80e-09 | 15 |
nephrogenic mesenchyme | 1.80e-09 | 15 |
trunk region element | 2.64e-09 | 101 |
cortex of kidney | 7.70e-09 | 12 |
renal parenchyma | 7.70e-09 | 12 |
excretory tube | 8.23e-09 | 16 |
kidney epithelium | 8.23e-09 | 16 |
endo-epithelium | 1.17e-08 | 82 |
cavitated compound organ | 3.06e-08 | 31 |
epithelial sac | 3.62e-08 | 25 |
subdivision of trunk | 7.72e-08 | 112 |
sac | 8.63e-08 | 26 |
cortex | 6.30e-07 | 15 |
parenchyma | 6.30e-07 | 15 |