FFCP PHASE1:Hg19::chr3:189507432..189507459,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:189507432..189507459,+ to FFCP PHASE1:Hg19::chr3:189507432..189507459,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8626 | |EntrezGene=8626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15979 | |HGNC=15979 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H3D4 | |UniProt=Q9H3D4 | ||
|association_with_transcript=0bp_to_ENST00000354600,NM_001114980,NM_001114981,NM_001114982,uc003fsa.2,uc003fsb.2,uc003fsc.2,uc003fsd.2,uc010hzd.1_5end | |||
|cluster_id=chr3:189507432..189507459,+ | |||
|coexpression_cluster_id=C4312 | |||
|description=CAGE_peak_1_at_TP63_5end | |||
|id=chr3:189507432..189507459,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.95e-25!43;CL:0000223!1.90e-18!59;CL:0002251!8.62e-15!21;CL:0002368!6.46e-14!13;CL:0000066!9.17e-13!254;CL:0002159!8.78e-12!13;CL:0000622!6.57e-09!5;CL:0002077!1.61e-08!33;CL:0002202!4.49e-08!9;CL:0002632!4.49e-08!9;CL:0000244!2.14e-07!4;CL:0000731!2.14e-07!4;CL:0000154!2.65e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.41e-23;42!CL:0002251;8.05e-19;20!CL:0002368;2.41e-16;13!CL:0002159;9.74e-13;14!CL:0000622;2.80e-10;5!CL:0002202;2.08e-09;9!CL:0002632;2.08e-09;9!CL:0000244;1.76e-08;4!CL:0000731;1.76e-08;4!CL:0000154;1.82e-08;6!CL:0002621;5.00e-07;3!CL:0000307;9.57e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.10e-31,42;CL:0000223,1.57e-23,58;CL:0002251,8.96e-19,20;CL:0002368,2.23e-16,13;CL:0000066,5.26e-14,253;CL:0002159,9.80e-13,14;CL:0000622,2.85e-10,5;CL:0002202,1.95e-09,9;CL:0002632,1.95e-09,9;CL:0000244,1.76e-08,4;CL:0000731,1.76e-08,4;CL:0000154,1.85e-08,6;CL:0000076,1.21e-07,63;CL:0002621,5.00e-07,3;CL:0002077,6.20e-07,34;CL:0000068,9.48e-07,3;CL:0000069,9.48e-07,3;CL:0000307,9.48e-07,3;CL:0000377,9.48e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;5.31e-13;58!CL:0000377;9.57e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!4.35e-16!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.76e-19;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.80e-19,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.08e-19!72;UBERON:0000161!2.44e-18!35;UBERON:0000166!1.40e-16!21;UBERON:0004119!9.76e-15!169;UBERON:0000925!9.76e-15!169;UBERON:0006595!9.76e-15!169;UBERON:0000165!5.12e-13!28;UBERON:0000930!5.12e-13!28;UBERON:0000065!1.53e-10!53;UBERON:0003102!3.26e-10!95;UBERON:0001007!5.93e-10!155;UBERON:0001555!5.93e-10!155;UBERON:0007026!5.93e-10!155;UBERON:0000344!7.30e-10!12;UBERON:0000974!1.19e-09!10;UBERON:0003729!1.77e-09!5;UBERON:0001044!8.45e-09!6;UBERON:0003293!8.45e-09!6;UBERON:0003294!8.45e-09!6;UBERON:0010047!8.45e-09!6;UBERON:0000167!8.45e-09!6;UBERON:0000365!1.08e-08!5;UBERON:0003408!1.19e-08!10;UBERON:0004921!1.19e-08!129;UBERON:0004185!1.19e-08!129;UBERON:0000077!4.61e-08!130;UBERON:0003343!7.00e-08!4;UBERON:0004785!7.00e-08!4;UBERON:0007196!9.94e-08!14;UBERON:0001558!9.94e-08!14;UBERON:0001041!1.23e-07!98;UBERON:0005178!1.34e-07!34;UBERON:0002224!1.34e-07!34;UBERON:0001444!1.71e-07!48;UBERON:0000464!1.93e-07!104;UBERON:0005181!2.88e-07!35;UBERON:0005910!3.96e-07!6;UBERON:0000078!9.29e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;6.24e-17;19!UBERON:0000166;6.24e-17;19!UBERON:0000165;8.94e-16;28!UBERON:0000974;1.07e-11;6!UBERON:0000344;1.24e-11;20!UBERON:0001041;7.35e-11;14!UBERON:0001044;3.78e-10;6!UBERON:0003293;3.78e-10;6!UBERON:0003294;3.78e-10;6!UBERON:0010047;3.78e-10;6!UBERON:0003408;3.78e-10;6!UBERON:0000167;3.78e-10;6!UBERON:0000365;5.12e-10;5!UBERON:0000486;1.19e-09;12!UBERON:0003729;2.60e-09;13!UBERON:0003343;4.65e-09;4!UBERON:0004785;4.65e-09;4!UBERON:0007196;2.04e-08;15!UBERON:0001558;2.04e-08;15!UBERON:0005910;2.99e-08;6!UBERON:0001004;9.38e-08;65!UBERON:0005178;2.76e-07;34!UBERON:0002224;2.76e-07;34!UBERON:0005911;4.26e-07;36!UBERON:0001555;4.87e-07;54!UBERON:0001949;5.00e-07;3!UBERON:0005181;5.45e-07;35!UBERON:0000153;5.71e-07;54!UBERON:0007811;6.55e-07;52!UBERON:0003126;9.96e-07;7!UBERON:0001005;9.96e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.88e-21,74;UBERON:0000161,1.16e-19,36;UBERON:0000166,1.25e-18,22;UBERON:0004119,9.74e-18,160;UBERON:0000925,9.74e-18,160;UBERON:0006595,9.74e-18,160;UBERON:0000165,4.64e-15,29;UBERON:0000930,4.64e-15,29;UBERON:0003102,5.42e-15,99;UBERON:0000153,1.66e-13,62;UBERON:0007811,1.66e-13,62;UBERON:0001007,6.10e-12,145;UBERON:0001555,6.10e-12,145;UBERON:0007026,6.10e-12,145;UBERON:0000065,7.79e-12,54;UBERON:0000344,1.27e-11,20;UBERON:0000974,2.62e-11,10;UBERON:0000033,9.72e-11,56;UBERON:0004921,3.72e-10,118;UBERON:0001044,3.84e-10,6;UBERON:0003293,3.84e-10,6;UBERON:0003294,3.84e-10,6;UBERON:0010047,3.84e-10,6;UBERON:0000167,3.84e-10,6;UBERON:0003408,4.09e-10,10;UBERON:0000365,5.12e-10,5;UBERON:0003729,2.63e-09,13;UBERON:0001444,2.95e-09,49;UBERON:0001041,3.18e-09,87;UBERON:0003343,4.69e-09,4;UBERON:0004785,4.69e-09,4;UBERON:0007196,1.96e-08,15;UBERON:0001558,1.96e-08,15;UBERON:0005178,2.79e-08,34;UBERON:0002224,2.79e-08,34;UBERON:0005910,2.99e-08,6;UBERON:0005181,6.09e-08,35;UBERON:0006562,2.14e-07,11;UBERON:0001949,5.00e-07,3;UBERON:0000072,5.98e-07,47;UBERON:0003126,9.90e-07,7;UBERON:0001005,9.90e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,21.1466881630153,43.373652304068,35.8661389861784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,66.3017424692427,51.5390375470357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,102.482102253496,0,0,0,0,0,1.12135520028461,0,0,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.2478218224572,140.46425210428,124.759998994217,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,80.5567094899312,47.2087363682002,74.9946134190766,144.160209111831,0,0,0,0,0,0,0,0,0,0,0,0,0,27.1828118561653,54.0902452800328,60.537966522499,73.8857812298498,57.5455198257645,36.0379718415299,0,0,0,0,0.37872730027914,0.126995788584338,0,0,6.84289784090821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.7281369867311,87.3848585001656,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7821073144885,0,0,239.468729344404,144.963434866144,0,0,0,0,0,0,0,0,0,86.1134409030696,109.16395826338,262.49934960136,102.877463130094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,140.099396128346,51.6132752162556,40.2896643986894,4.23647103495506,75.3384402174652,38.7484394035539,58.9762104203779,96.483828086923,0,0,0,0,0,0,0,0,0,0,61.505094211239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.780103689942349,0,1.90995587790152,0.593929361665277,0,0,0,0,0,0,3.18796781201712,0,0,0,0,0,0,0,0,9.46976694114563,0,0,0,0,0,3.38556089410803,0,1.44999915086959,62.0174293155973,1.77977555204936,4.25497827182285,0,0,0,0,0,0,0,0,0,0,290.419659332331,19.0067138504379,0,10.6059396018508,7.98843035246972,0,9.25103363222567,8.42697859297133,13.3258694004659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.8710835097149,0,10.2591944740842,0,0,0,0,0,0,0,0,0,0,2.08012009519708,0,165.901128822541,26.7271764201836,8.73633341210151,0,0,0,0,59.4542671074011,0,8.58726814966023,0,0,0,0,0,0,2.19790570540343,0,8.0175617316141,0,0,0,29.2260602924826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,9.2856234546954,0,123.775399724129,0.236417121897595,0.577000469484979,0,0,17.8481133507084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70859860108311,0.943225830597996,1.24271716604159,0,0,0,237.462947890508,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,76.8629508966956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,1.47918486351039,0,0,0,0,0,91.7609570639556,155.519315008243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,186.775108307452,83.7585035768957,167.286881851771,67.0048863671962,0,0,0,0,0,0,20.4287221695509,0,0,0,0,0,0,0,3.28954660114309,15.3825465300681,0,22.3584248369292,0,0,0,0,13.748867375209,0,0,0,0,0,0,18.2103975413193,0,0,0,0,0,0,0,0,0,0,43.7226106384008,43.3624931818633,40.0930603852173,5.16272830584333,1.41998400876678,0.766920642832419,11.0080633049642,0,0,0,0,0,0,0,0,0,67.5138280352204,0,0,0,0,0,0,0,0,0,3.92237314806249,0.707029641304878,0,0,0,0,0,0.386747327841463,0,165.162393210233,42.7002794775987,0,0,4.58729283404541,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.18378979906969,0,1.51557396436479,0.267964130156178,0,0,15.5660806787716,6.18967521805725,12.5948374180212,27.9956961474319,0,0,0,33.3106624282351,18.4805982586052,43.9135385655111,25.9634383521488,14.9697160445706,34.6777924282751,0,0,0,4.69281884806909,0.611207220914332,15.4620547759981,7.32332451604064,2.81783311027437,0 | 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| ||
|short_description=p1@TP63 | |||
}} | }} |
Latest revision as of 09:12, 17 September 2015
Short description: | p1@TP63 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TP63_5end |
Coexpression cluster: | C4312_cervical_Small_malignant_Sebocyte_oral_epidermoid_squamous |
Association with transcript: | 0bp_to_ENST00000354600, NM_001114980, NM_001114981, NM_001114982, uc003fsa.2, uc003fsb.2, uc003fsc.2, uc003fsd.2, uc010hzd.1_5end |
EntrezGene: | TP63 |
HGNC: | 15979 |
UniProt: | Q9H3D4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.10e-31 | 42 |
endodermal cell | 1.57e-23 | 58 |
epithelial cell of alimentary canal | 8.96e-19 | 20 |
respiratory epithelial cell | 2.23e-16 | 13 |
epithelial cell | 5.26e-14 | 253 |
general ecto-epithelial cell | 9.80e-13 | 14 |
acinar cell | 2.85e-10 | 5 |
epithelial cell of tracheobronchial tree | 1.95e-09 | 9 |
epithelial cell of lower respiratory tract | 1.95e-09 | 9 |
transitional epithelial cell | 1.76e-08 | 4 |
urothelial cell | 1.76e-08 | 4 |
protein secreting cell | 1.85e-08 | 6 |
squamous epithelial cell | 1.21e-07 | 63 |
gingival epithelial cell | 5.00e-07 | 3 |
ecto-epithelial cell | 6.20e-07 | 34 |
duct epithelial cell | 9.48e-07 | 3 |
branched duct epithelial cell | 9.48e-07 | 3 |
tracheal epithelial cell | 9.48e-07 | 3 |
tracheoblast | 9.48e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.80e-19 | 14 |