FFCP PHASE1:Hg19::chr3:190106002..190106011,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10686 | |EntrezGene=10686 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2037 | |HGNC=2037 | ||
|TSSclassifier=strong | |||
|UniProt=A0SDD8 | |UniProt=A0SDD8 | ||
|association_with_transcript=93bp_to_CU687000,DQ305102,HQ448426_5end | |association_with_transcript=93bp_to_CU687000,DQ305102,HQ448426_5end | ||
|cluster_id=chr3:190106002..190106011,+ | |||
|coexpression_cluster_id=C601 | |||
|description=CAGE_peak_4_at_CLDN16_5end | |description=CAGE_peak_4_at_CLDN16_5end | ||
|id=chr3:190106002..190106011,+ | |id=chr3:190106002..190106011,+ | ||
|ontology_enrichment_celltype=CL:1000507!1.12e-19!12;CL:1000494!1.12e-19!12;CL:0002149!3.45e-15!6;CL:0002255!3.45e-15!6;CL:1000449!9.58e-15!16;CL:0000239!7.92e-14!3;CL:1000615!7.92e-14!3;CL:0002306!7.92e-14!3;CL:1000497!4.26e-13!18;CL:0002518!4.26e-13!18;CL:0002681!6.22e-12!13;CL:0002584!6.22e-12!13;CL:0000313!9.97e-11!1 | |ontology_enrichment_celltype=CL:1000507!1.12e-19!12;CL:1000494!1.12e-19!12;CL:0002149!3.45e-15!6;CL:0002255!3.45e-15!6;CL:1000449!9.58e-15!16;CL:0000239!7.92e-14!3;CL:1000615!7.92e-14!3;CL:0002306!7.92e-14!3;CL:1000497!4.26e-13!18;CL:0002518!4.26e-13!18;CL:0002681!6.22e-12!13;CL:0002584!6.22e-12!13;CL:0000313!9.97e-11!1 | ||
|ontology_enrichment_celltype_v019=CL:0000239;6.50e-30;3!CL:1000615;6.50e-30;3!CL:0002306;6.50e-30;3!CL:0002149;1.01e-15;6!CL:0002255;1.01e-15;6!CL:1000507;1.05e-09;10!CL:1000494;1.05e-09;10!CL:0002681;3.07e-08;12!CL:0002584;3.07e-08;12!CL:1000449;9.09e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,8.74e-30,3;CL:1000615,8.74e-30,3;CL:0002306,8.74e-30,3;CL:0002149,9.74e-16,6;CL:0002255,9.74e-16,6;CL:1000507,1.15e-09,10;CL:1000494,1.15e-09,10;CL:0002681,3.30e-08,12;CL:0002584,3.30e-08,12;CL:1000449,9.64e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0003918;9.03e-10;10!UBERON:0007687;9.03e-10;10 | |||
|ontology_enrichment_disease=DOID:4468!1.03e-20!2;DOID:3001!3.45e-15!6;DOID:299!1.46e-13!25;DOID:120!1.59e-12!27;DOID:193!1.24e-11!29;DOID:2152!9.97e-11!1;DOID:2355!1.46e-10!1;DOID:3371!1.77e-10!1;DOID:4549!1.77e-10!1;DOID:5861!1.77e-10!1;DOID:6496!1.77e-10!1 | |ontology_enrichment_disease=DOID:4468!1.03e-20!2;DOID:3001!3.45e-15!6;DOID:299!1.46e-13!25;DOID:120!1.59e-12!27;DOID:193!1.24e-11!29;DOID:2152!9.97e-11!1;DOID:2355!1.46e-10!1;DOID:3371!1.77e-10!1;DOID:4549!1.77e-10!1;DOID:5861!1.77e-10!1;DOID:6496!1.77e-10!1 | ||
|ontology_enrichment_disease_v019=DOID:4468;3.99e-45;2!DOID:3001;1.01e-15;6!DOID:299;1.35e-14;25!DOID:120;1.51e-13;27!DOID:193;1.21e-12;29 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.00e-45,2;DOID:3001,9.74e-16,6;DOID:299,1.33e-14,25;DOID:120,1.49e-13,27;DOID:193,1.20e-12,29 | |||
|ontology_enrichment_uberon=UBERON:0009773!1.12e-19!12;UBERON:0001231!1.12e-19!12;UBERON:0004810!1.12e-19!12;UBERON:0002113!1.14e-16!27;UBERON:0003918!1.14e-16!27;UBERON:0005095!1.14e-16!27;UBERON:0007687!1.14e-16!27;UBERON:0004211!9.58e-15!16;UBERON:0001285!9.58e-15!16;UBERON:0007684!9.58e-15!16;UBERON:0003220!9.58e-15!16;UBERON:0004208!9.58e-15!16;UBERON:0000489!5.84e-14!32;UBERON:0006555!7.14e-14!17;UBERON:0005103!7.14e-14!17;UBERON:0000083!7.14e-14!17;UBERON:0009201!7.14e-14!17;UBERON:0004819!7.14e-14!17;UBERON:0006553!7.14e-14!17;UBERON:0003074!7.14e-14!17;UBERON:0003060!7.14e-14!17;UBERON:0006853!7.92e-14!3;UBERON:0007685!7.92e-14!3;UBERON:0004134!7.92e-14!3;UBERON:0000080!4.26e-13!18;UBERON:0002120!4.26e-13!18;UBERON:0004875!4.26e-13!18;UBERON:0005721!4.26e-13!18;UBERON:0005754!4.26e-13!18;UBERON:0007297!4.26e-13!18;UBERON:0001225!6.22e-12!13;UBERON:0008987!6.22e-12!13;UBERON:0004876!8.90e-12!20;UBERON:0003887!3.28e-11!21;UBERON:0004911!9.97e-11!1;UBERON:0006554!5.84e-10!44;UBERON:0001851!9.88e-10!16;UBERON:0001008!1.01e-09!45;UBERON:0000353!3.60e-09!17;UBERON:0000058!4.98e-09!26;UBERON:0005172!8.03e-08!55;UBERON:0005173!8.03e-08!55;UBERON:0002417!5.59e-07!61;UBERON:0000916!5.59e-07!61 | |ontology_enrichment_uberon=UBERON:0009773!1.12e-19!12;UBERON:0001231!1.12e-19!12;UBERON:0004810!1.12e-19!12;UBERON:0002113!1.14e-16!27;UBERON:0003918!1.14e-16!27;UBERON:0005095!1.14e-16!27;UBERON:0007687!1.14e-16!27;UBERON:0004211!9.58e-15!16;UBERON:0001285!9.58e-15!16;UBERON:0007684!9.58e-15!16;UBERON:0003220!9.58e-15!16;UBERON:0004208!9.58e-15!16;UBERON:0000489!5.84e-14!32;UBERON:0006555!7.14e-14!17;UBERON:0005103!7.14e-14!17;UBERON:0000083!7.14e-14!17;UBERON:0009201!7.14e-14!17;UBERON:0004819!7.14e-14!17;UBERON:0006553!7.14e-14!17;UBERON:0003074!7.14e-14!17;UBERON:0003060!7.14e-14!17;UBERON:0006853!7.92e-14!3;UBERON:0007685!7.92e-14!3;UBERON:0004134!7.92e-14!3;UBERON:0000080!4.26e-13!18;UBERON:0002120!4.26e-13!18;UBERON:0004875!4.26e-13!18;UBERON:0005721!4.26e-13!18;UBERON:0005754!4.26e-13!18;UBERON:0007297!4.26e-13!18;UBERON:0001225!6.22e-12!13;UBERON:0008987!6.22e-12!13;UBERON:0004876!8.90e-12!20;UBERON:0003887!3.28e-11!21;UBERON:0004911!9.97e-11!1;UBERON:0006554!5.84e-10!44;UBERON:0001851!9.88e-10!16;UBERON:0001008!1.01e-09!45;UBERON:0000353!3.60e-09!17;UBERON:0000058!4.98e-09!26;UBERON:0005172!8.03e-08!55;UBERON:0005173!8.03e-08!55;UBERON:0002417!5.59e-07!61;UBERON:0000916!5.59e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0006853;6.50e-30;3!UBERON:0007685;6.50e-30;3!UBERON:0004134;6.50e-30;3!UBERON:0002113;5.40e-15;24!UBERON:0011143;5.40e-15;24!UBERON:0000489;1.74e-12;29!UBERON:0006554;4.40e-12;30!UBERON:0001008;4.40e-12;30!UBERON:0004211;1.05e-09;10!UBERON:0009773;1.05e-09;10!UBERON:0001231;1.05e-09;10!UBERON:0004810;1.05e-09;10!UBERON:0001225;3.07e-08;12!UBERON:0008987;3.07e-08;12!UBERON:0001851;9.09e-07;15!UBERON:0006555;9.09e-07;15!UBERON:0000353;9.09e-07;15!UBERON:0004819;9.09e-07;15!UBERON:0001285;9.09e-07;15!UBERON:0007684;9.09e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,8.74e-30,3;UBERON:0007685,8.74e-30,3;UBERON:0004134,8.74e-30,3;UBERON:0002113,6.98e-14,26;UBERON:0003918,6.98e-14,26;UBERON:0011143,6.98e-14,26;UBERON:0005095,6.98e-14,26;UBERON:0007687,6.98e-14,26;UBERON:0000489,1.03e-11,31;UBERON:0004810,1.15e-09,10;UBERON:0001225,3.30e-08,12;UBERON:0008987,3.30e-08,12;UBERON:0006554,7.54e-08,47;UBERON:0001008,1.08e-07,48;UBERON:0005172,7.16e-07,54;UBERON:0005173,7.16e-07,54;UBERON:0001851,9.64e-07,15;UBERON:0004211,9.64e-07,15;UBERON:0009773,9.64e-07,15;UBERON:0000353,9.64e-07,15;UBERON:0001231,9.64e-07,15;UBERON:0001285,9.64e-07,15;UBERON:0007684,9.64e-07,15;UBERON:0004208,9.64e-07,15 | |||
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|short_description=p4@CLDN16 | |short_description=p4@CLDN16 | ||
}} | }} |
Latest revision as of 09:54, 17 September 2015
Short description: | p4@CLDN16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CLDN16_5end |
Coexpression cluster: | C601_endometrial_clear_thyroid_kidney_Renal_serous_endometrioid |
Association with transcript: | 93bp_to_CU687000, DQ305102, HQ448426_5end |
EntrezGene: | CLDN16 |
HGNC: | 2037 |
UniProt: | A0SDD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 8.74e-30 | 3 |
kidney cortex tubule cell | 8.74e-30 | 3 |
epithelial cell of proximal tubule | 8.74e-30 | 3 |
epithelial cell of uterus | 9.74e-16 | 6 |
stromal cell of endometrium | 9.74e-16 | 6 |
kidney tubule cell | 1.15e-09 | 10 |
nephron tubule epithelial cell | 1.15e-09 | 10 |
kidney cortical cell | 3.30e-08 | 12 |
renal cortical epithelial cell | 3.30e-08 | 12 |
epithelial cell of nephron | 9.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 8.74e-30 | 3 |
region of nephron tubule | 8.74e-30 | 3 |
proximal tubule | 8.74e-30 | 3 |
kidney | 6.98e-14 | 26 |
kidney mesenchyme | 6.98e-14 | 26 |
upper urinary tract | 6.98e-14 | 26 |
kidney rudiment | 6.98e-14 | 26 |
kidney field | 6.98e-14 | 26 |
cavitated compound organ | 1.03e-11 | 31 |
nephron tubule epithelium | 1.15e-09 | 10 |
cortex of kidney | 3.30e-08 | 12 |
renal parenchyma | 3.30e-08 | 12 |
urinary system structure | 7.54e-08 | 47 |
renal system | 1.08e-07 | 48 |
abdomen element | 7.16e-07 | 54 |
abdominal segment element | 7.16e-07 | 54 |
cortex | 9.64e-07 | 15 |
nephron epithelium | 9.64e-07 | 15 |
renal tubule | 9.64e-07 | 15 |
parenchyma | 9.64e-07 | 15 |
nephron tubule | 9.64e-07 | 15 |
nephron | 9.64e-07 | 15 |
uriniferous tubule | 9.64e-07 | 15 |
nephrogenic mesenchyme | 9.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.00e-45 | 2 |
female reproductive endometrioid cancer | 9.74e-16 | 6 |
adenocarcinoma | 1.33e-14 | 25 |
female reproductive organ cancer | 1.49e-13 | 27 |
reproductive organ cancer | 1.20e-12 | 29 |