FFCP PHASE1:Hg19::chr19:36001386..36001429,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:36001386..36001429,- to FFCP PHASE1:Hg19::chr19:36001386..36001429,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=93099 | |EntrezGene=93099 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25063 | |HGNC=25063 | ||
|TSSclassifier=strong | |||
|UniProt=Q6E0U4 | |UniProt=Q6E0U4 | ||
|association_with_transcript=0bp_to_ENST00000461300,ENST00000462126,ENST00000462538,ENST00000463292,ENST00000480507,NM_001126059,NR_033746,uc002nzk.3,uc002nzl.3,uc002nzp.2,uc002nzq.2,uc002nzr.2,uc002nzs.2,uc002nzt.2,uc002nzu.2,uc002nzv.2,uc002nzw.2,uc002nzx.3,uc002nzy.3,uc010xsv.1,uc010xsw.1_5end | |||
|cluster_id=chr19:36001386..36001429,- | |||
|coexpression_cluster_id=C2484 | |||
|description=CAGE_peak_4_at_DMKN_5end | |||
|id=chr19:36001386..36001429,- | |||
|ontology_enrichment_celltype=CL:0000066!3.23e-29!254;CL:0002076!9.10e-13!43;CL:0000223!1.39e-08!59;CL:0002077!4.61e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.46e-12;42!CL:0002251;6.33e-08;20!CL:0002368;1.76e-07;13!CL:1000507;5.50e-07;10!CL:1000494;5.50e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.33e-40,253;CL:0002076,8.36e-16,42;CL:0000223,1.19e-11,58;CL:0002251,5.23e-08,20;CL:0002368,1.61e-07,13;CL:0002077,2.60e-07,34;CL:1000507,5.27e-07,10;CL:1000494,5.27e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.44e-08;29 | |||
|ontology_enrichment_disease=DOID:305!2.01e-18!106;DOID:0050687!5.76e-13!143;DOID:1749!7.69e-08!14;DOID:299!9.64e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.39e-09;14!DOID:299;1.07e-07;25!DOID:305;7.15e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.51e-23,106;DOID:0050687,3.97e-17,143;DOID:1749,2.98e-09,14;DOID:162,6.52e-08,235;DOID:299,9.57e-08,25;DOID:14566,3.48e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.81e-14!169;UBERON:0000925!2.81e-14!169;UBERON:0006595!2.81e-14!169;UBERON:0001004!3.98e-13!72;UBERON:0000464!3.58e-11!104;UBERON:0000064!3.77e-11!219;UBERON:0001007!5.03e-11!155;UBERON:0001555!5.03e-11!155;UBERON:0007026!5.03e-11!155;UBERON:0000065!9.68e-11!53;UBERON:0004921!3.41e-10!129;UBERON:0004185!3.41e-10!129;UBERON:0008947!4.97e-09!38;UBERON:0003258!4.97e-09!38;UBERON:0000466!5.03e-09!126;UBERON:0000077!5.39e-09!130;UBERON:0001041!9.33e-09!98;UBERON:0000072!1.37e-08!46;UBERON:0000481!2.30e-08!347;UBERON:0000062!3.65e-08!511;UBERON:0001008!6.10e-08!45;UBERON:0005157!7.13e-08!51;UBERON:0006554!8.49e-08!44;UBERON:0005177!2.24e-07!107;UBERON:0000063!4.81e-07!97;UBERON:0002553!8.98e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.35e-08;44!UBERON:0006554;2.27e-08;30!UBERON:0001008;2.27e-08;30!UBERON:0000072;7.54e-08;37!UBERON:0005911;1.41e-07;36!UBERON:0001004;1.66e-07;65!UBERON:0004211;5.50e-07;10!UBERON:0009773;5.50e-07;10!UBERON:0001231;5.50e-07;10!UBERON:0004810;5.50e-07;10!UBERON:0004807;6.09e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.70e-16,160;UBERON:0000925,9.70e-16,160;UBERON:0006595,9.70e-16,160;UBERON:0001007,2.52e-12,145;UBERON:0001555,2.52e-12,145;UBERON:0007026,2.52e-12,145;UBERON:0001004,2.86e-12,74;UBERON:0004921,7.32e-12,118;UBERON:0008947,5.23e-11,38;UBERON:0003258,5.23e-11,38;UBERON:0001041,1.50e-10,87;UBERON:0000065,2.62e-10,54;UBERON:0001008,3.07e-10,48;UBERON:0006554,4.62e-10,47;UBERON:0005177,6.81e-09,101;UBERON:0005153,1.32e-08,37;UBERON:0005157,3.28e-08,47;UBERON:0005911,5.57e-08,82;UBERON:0000072,7.14e-08,47;UBERON:0011216,1.09e-07,223;UBERON:0009569,1.55e-07,112;UBERON:0002113,4.55e-07,26;UBERON:0003918,4.55e-07,26;UBERON:0011143,4.55e-07,26;UBERON:0005095,4.55e-07,26;UBERON:0007687,4.55e-07,26;UBERON:0004810,5.27e-07,10;UBERON:0000489,6.95e-07,31 | |||
|phase1_expression=0.363356758541113,0.428201047781966,1.40954404095971,1.0007329835313,0.446961094427288,0,0,0.631719873426831,0,10.3208253330634,29.307649054842,5.46103430325431,6.06664049925443,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,2.9801228241701,3.03772180964799,2.91229890860613,0.393364276848904,1.53531759238885,0.309632246632152,15.6301608161418,7.228942050678,5.9160641626686,0,0,0.293600439334847,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0.400395987036012,0,0,0.954053754535364,0,0.587237189370939,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0.766440987203842,0.34362744548263,0.253019692019503,0.637130828648193,0.651083453856419,0.950452044448374,0.150575119077773,0.639933055772092,0,0.236777252044017,0.821127996921047,1.20964045934839,0.534880391567015,0.579297615531196,0,0,0.511450247374121,0.722878304769133,1.00267582127178,2.17269778441236,0.795285947051099,0.973269740605272,1.89069634328136,3.54767035940102,1.75669571386252,2.61958150995425,13.1146303785315,15.2021621541616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,15.2632918249887,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,0,0,2.48968828319813,0,0,0.454072282934794,0,0,0,0.570471821544449,0.298897361103602,0,0,0,0,0.122834317311768,0,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0.30648779579902,0,0.453728732640084,0,0.213557388818567,1.27159140695737,0,0.103052529238439,0,0.37223371266318,0.168776332241266,0.68205903612839,0.252433774244115,0.276149695926898,0.161646056818812,0.710019185033229,0.10075209822764,0,11.5956511897978,7.0913991353617,6.30970109855808,7.68434348616451,11.3975600756477,8.71454571521388,6.3233243559376,9.33587148239825,9.48941133597158,0,0,0,0,0,6.03364680203204,5.90046415273356,4.82022059766964,5.18381671842252,5.44698610231015,6.16903609688851,6.20224017536756,6.27908688401107,4.23221872641029,0,0,5.3504621473082,0,0,0,1.18157981336281,0,8.85516757510418,1.54411029268673,9.76777540136768,7.86812272803337,5.73015142746296,10.0921405222797,0.325808305310325,0,0,0.579652024875384,1.40890433082986,0,0,0,7.90204397959275,13.735778593518,0,0,0,26.2454735162976,10.4148919483293,11.2002326821485,7.6124744297421,6.1033127087932,9.20118429996507,0,0,0,0,0.12624243342638,0.571481048629521,3.05590740446622,1.17217447210047,1.71072446022705,3.08482478109971,6.9078903304101,2.00078502841405,0.112131084345361,0,0,0.387815147273333,0,0,0.797814349754612,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,5.72734816413214,6.10073421020206,8.89759621520308,0,0,0,0.479249710983165,1.14861935834114,0,0,0.821905290201534,1.07436577943937,0.336255431980582,0.788123040807709,0.646882724578552,0.898401253958239,0,0,0,0,0,0,0,0,1.10422342547226,0.500170521059677,0.271265023699736,1.03985430765404,0.535286966391485,0,0.117141414992713,1.50473049863859,2.27407504055985,0,0.664225598535437,0.368738337083406,0.173767228936166,0.195801157462741,0,0.413536052245775,0,0.320182673410333,1.5156378572313,3.32870879020994,3.32629322662648,0.248107807818777,0.767309866440312,1.96462066103151,1.92208723883551,1.02341449813341,0,5.93672265779964,0,0,0,0,0,11.1190693624292,10.4263364557708,11.1417996612435,0,0,0.131124414959424,9.02399225814824,9.01079444121653,9.41219723012226,2.92278449306521,5.80533958910816,0,0,0.647747748306418,1.54227252690289,1.62567862526312,5.01689773854853,12.998689925297,13.2972161428596,10.074363962498,0,0,1.02580050046556,6.88830755969382,9.43597344526479,1.03041011647722,0,0,7.46545199395024,16.9015663969496,1.6068392984416,0,0.924291702687866,0.460511024178389,0,0.322260734604821,0.725083469571143,0.0852266274161009,0.0890320356467374,9.0906703448538,7.68760269460425,3.95599408733211,5.8671512896219,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0.316379424718726,0.762520775695299,0.767693373934002,0,0,0,1.61885211824983,1.37268514868027,0,0.404364963146632,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0.578775534266688,0,0,0.30982349809975,0.845086807596724,0,0.196498082026242,0,0.709522128141196,1.26664581178598,0.329294892959902,0,0.349934720244983,8.37132380711955,10.0545341330368,5.44454924306613,0.941438007767792,19.8032471428766,10.1082885400575,8.86860307073351,6.20253180558791,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0,0,0.79312517629427,4.3797869162264,0,4.16568367167754,0,0,0,0.478278818186467,0,0,0,0,0,0,0,0,9.31104777908818,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7428108081644,0,10.0729233052096,0.111443384277478,0,7.1623345421307,3.8605408508243,6.75753544618311,0,0.281338832821026,0,0,5.27813520319984,4.38345574152353,0.552567831062295,3.27512572210559,9.5109874727004,4.80030741298171,0,4.673154259661,8.23497403507802,0,0.789147245095469,0,0,1.93866549219044,2.04089815956073,0,1.5625665665114,3.93569999982881,2.17499872630438,8.19312827655598,5.33932665614809,10.8738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| ||
|short_description=p4@DMKN | |||
}} | }} |
Latest revision as of 12:20, 17 September 2015
Short description: | p4@DMKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DMKN_5end |
Coexpression cluster: | C2484_Alveolar_Mallassezderived_Urothelial_epidermoid_Esophageal_Corneal_endometrial |
Association with transcript: | 0bp_to_ENST00000461300, ENST00000462126, ENST00000462538, ENST00000463292, ENST00000480507, NM_001126059, NR_033746, uc002nzk.3, uc002nzl.3, uc002nzp.2, uc002nzq.2, uc002nzr.2, uc002nzs.2, uc002nzt.2, uc002nzu.2, uc002nzv.2, uc002nzw.2, uc002nzx.3, uc002nzy.3, uc010xsv.1, uc010xsw.1_5end |
EntrezGene: | DMKN |
HGNC: | 25063 |
UniProt: | Q6E0U4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.33e-40 | 253 |
endo-epithelial cell | 8.36e-16 | 42 |
endodermal cell | 1.19e-11 | 58 |
epithelial cell of alimentary canal | 5.23e-08 | 20 |
respiratory epithelial cell | 1.61e-07 | 13 |
ecto-epithelial cell | 2.60e-07 | 34 |
kidney tubule cell | 5.27e-07 | 10 |
nephron tubule epithelial cell | 5.27e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.70e-16 | 160 |
endoderm | 9.70e-16 | 160 |
presumptive endoderm | 9.70e-16 | 160 |
digestive system | 2.52e-12 | 145 |
digestive tract | 2.52e-12 | 145 |
primitive gut | 2.52e-12 | 145 |
respiratory system | 2.86e-12 | 74 |
subdivision of digestive tract | 7.32e-12 | 118 |
respiratory primordium | 5.23e-11 | 38 |
endoderm of foregut | 5.23e-11 | 38 |
foregut | 1.50e-10 | 87 |
respiratory tract | 2.62e-10 | 54 |
renal system | 3.07e-10 | 48 |
urinary system structure | 4.62e-10 | 47 |
trunk region element | 6.81e-09 | 101 |
epithelial bud | 1.32e-08 | 37 |
epithelial fold | 3.28e-08 | 47 |
endo-epithelium | 5.57e-08 | 82 |
segment of respiratory tract | 7.14e-08 | 47 |
organ system subdivision | 1.09e-07 | 223 |
subdivision of trunk | 1.55e-07 | 112 |
kidney | 4.55e-07 | 26 |
kidney mesenchyme | 4.55e-07 | 26 |
upper urinary tract | 4.55e-07 | 26 |
kidney rudiment | 4.55e-07 | 26 |
kidney field | 4.55e-07 | 26 |
nephron tubule epithelium | 5.27e-07 | 10 |
cavitated compound organ | 6.95e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.51e-23 | 106 |
cell type cancer | 3.97e-17 | 143 |
squamous cell carcinoma | 2.98e-09 | 14 |
cancer | 6.52e-08 | 235 |
adenocarcinoma | 9.57e-08 | 25 |
disease of cellular proliferation | 3.48e-07 | 239 |