FFCP PHASE1:Hg19::chr1:155940369..155940382,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9181 | |EntrezGene=9181 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=682 | |HGNC=682 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=471bp_to_ENST00000487755_5end | |association_with_transcript=471bp_to_ENST00000487755_5end | ||
|cluster_id=chr1:155940369..155940382,- | |||
|description=CAGE_peak_30_at_ARHGEF2_5end | |description=CAGE_peak_30_at_ARHGEF2_5end | ||
|id=chr1:155940369..155940382,- | |id=chr1:155940369..155940382,- | ||
|ontology_enrichment_celltype=CL:0000766!5.19e-23!76;CL:0002057!5.44e-23!42;CL:0002194!1.51e-21!63;CL:0000576!1.51e-21!63;CL:0000040!1.51e-21!63;CL:0000559!1.51e-21!63;CL:0000839!6.02e-21!70;CL:0000860!6.94e-21!45;CL:0002009!1.41e-20!65;CL:0000557!1.68e-20!71;CL:0000763!7.48e-13!112;CL:0000049!7.48e-13!112;CL:0000738!3.47e-08!140;CL:0002087!1.18e-07!119;CL:0002031!1.32e-07!124 | |ontology_enrichment_celltype=CL:0000766!5.19e-23!76;CL:0002057!5.44e-23!42;CL:0002194!1.51e-21!63;CL:0000576!1.51e-21!63;CL:0000040!1.51e-21!63;CL:0000559!1.51e-21!63;CL:0000839!6.02e-21!70;CL:0000860!6.94e-21!45;CL:0002009!1.41e-20!65;CL:0000557!1.68e-20!71;CL:0000763!7.48e-13!112;CL:0000049!7.48e-13!112;CL:0000738!3.47e-08!140;CL:0002087!1.18e-07!119;CL:0002031!1.32e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.03e-24;33!CL:0002057;2.03e-24;33!CL:0000767;2.58e-21;3!CL:0000473;1.57e-20;39!CL:0000234;1.57e-20;39!CL:0000576;1.69e-17;48!CL:0000766;1.14e-14;69!CL:0000094;2.52e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.36e-29,48;CL:0000234,2.36e-29,48;CL:0000860,2.50e-29,42;CL:0002057,2.50e-29,42;CL:0000766,5.64e-27,72;CL:0002194,6.61e-23,59;CL:0000576,6.61e-23,59;CL:0000040,6.61e-23,59;CL:0000559,6.61e-23,59;CL:0002009,4.49e-22,61;CL:0000767,4.71e-21,3;CL:0000839,3.28e-20,66;CL:0000557,7.17e-20,67;CL:0000763,6.54e-17,108;CL:0000049,6.54e-17,108;CL:0000738,9.75e-13,136;CL:0002087,1.88e-10,115;CL:0002032,3.13e-10,161;CL:0000837,3.13e-10,161;CL:0002031,6.67e-10,120;CL:0000037,1.16e-09,168;CL:0000988,5.34e-09,177;CL:0000094,3.13e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;4.55e-22;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.19e-21!57;UBERON:0005068!8.19e-21!57;UBERON:0006241!8.19e-21!57;UBERON:0007135!8.19e-21!57;UBERON:0002371!5.10e-17!80;UBERON:0002616!1.35e-16!59;UBERON:0001017!1.60e-15!82;UBERON:0001474!4.06e-15!86;UBERON:0000955!6.77e-15!69;UBERON:0006238!6.77e-15!69;UBERON:0005743!2.39e-14!86;UBERON:0003075!1.27e-13!86;UBERON:0007284!1.27e-13!86;UBERON:0002780!4.35e-13!41;UBERON:0001890!4.35e-13!41;UBERON:0006240!4.35e-13!41;UBERON:0000073!6.37e-13!94;UBERON:0001016!6.37e-13!94;UBERON:0002390!9.09e-13!102;UBERON:0003061!9.09e-13!102;UBERON:0003080!1.22e-12!42;UBERON:0002346!1.35e-12!90;UBERON:0001893!4.56e-12!34;UBERON:0002020!6.39e-12!34;UBERON:0003528!6.39e-12!34;UBERON:0004765!2.08e-11!101;UBERON:0001434!2.08e-11!101;UBERON:0002791!4.17e-11!33;UBERON:0002193!9.91e-11!112;UBERON:0002298!1.09e-10!8;UBERON:0002405!2.21e-10!115;UBERON:0003076!4.44e-10!15;UBERON:0003057!4.44e-10!15;UBERON:0001869!7.83e-10!32;UBERON:0007023!1.45e-09!115;UBERON:0002204!6.37e-09!167;UBERON:0001950!1.92e-08!20;UBERON:0002308!1.98e-08!9;UBERON:0000125!1.98e-08!9;UBERON:0003081!3.63e-08!216;UBERON:0004733!4.16e-08!12;UBERON:0002028!4.16e-08!12;UBERON:0007277!4.16e-08!12;UBERON:0002619!1.81e-07!22;UBERON:0004732!2.34e-07!13;UBERON:0003056!5.17e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;3.57e-10;3!UBERON:0005290;3.57e-10;3!UBERON:0002336;2.98e-08;1!UBERON:0002038;2.98e-08;1!UBERON:0011215;2.98e-08;1!UBERON:0001018;2.98e-08;1!UBERON:0009661;2.98e-08;1!UBERON:0002950;2.98e-08;1!UBERON:0002473;2.98e-08;1!UBERON:0005340;2.98e-08;1!UBERON:0003544;2.98e-08;1!UBERON:0005970;2.98e-08;1!UBERON:0002316;2.98e-08;1!UBERON:0001020;2.98e-08;1!UBERON:0001891;2.98e-08;1!UBERON:0002437;2.98e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.29e-17,76;UBERON:0001474,9.34e-16,82;UBERON:0004765,4.07e-14,90;UBERON:0002405,1.42e-13,93;UBERON:0002390,9.65e-13,98;UBERON:0003061,9.65e-13,98;UBERON:0001434,1.97e-12,100;UBERON:0002193,2.62e-11,108;UBERON:0001896,3.75e-10,3;UBERON:0005290,3.75e-10,3;UBERON:0010096,3.75e-10,3;UBERON:0002336,1.41e-08,1;UBERON:0011215,1.41e-08,1;UBERON:0001018,1.41e-08,1;UBERON:0002473,1.41e-08,1;UBERON:0005340,1.41e-08,1;UBERON:0003544,1.41e-08,1;UBERON:0005970,1.41e-08,1;UBERON:0002316,1.41e-08,1;UBERON:0001020,1.41e-08,1;UBERON:0002437,1.41e-08,1;UBERON:0002038,4.72e-08,1;UBERON:0009661,4.72e-08,1;UBERON:0002950,4.72e-08,1;UBERON:0001891,4.72e-08,1;UBERON:0009616,4.72e-08,1;UBERON:0010286,4.72e-08,1;UBERON:0003081,1.96e-07,203;UBERON:0002204,2.23e-07,167 | |||
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| ||
|short_description=p30@ARHGEF2 | |short_description=p30@ARHGEF2 | ||
}} | }} |
Latest revision as of 13:47, 17 September 2015
Short description: | p30@ARHGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_ARHGEF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 471bp_to_ENST00000487755_5end |
EntrezGene: | ARHGEF2 |
HGNC: | 682 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.36e-29 | 48 |
phagocyte | 2.36e-29 | 48 |
classical monocyte | 2.50e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.50e-29 | 42 |
myeloid leukocyte | 5.64e-27 | 72 |
monopoietic cell | 6.61e-23 | 59 |
monocyte | 6.61e-23 | 59 |
monoblast | 6.61e-23 | 59 |
promonocyte | 6.61e-23 | 59 |
macrophage dendritic cell progenitor | 4.49e-22 | 61 |
basophil | 4.71e-21 | 3 |
myeloid lineage restricted progenitor cell | 3.28e-20 | 66 |
granulocyte monocyte progenitor cell | 7.17e-20 | 67 |
myeloid cell | 6.54e-17 | 108 |
common myeloid progenitor | 6.54e-17 | 108 |
leukocyte | 9.75e-13 | 136 |
nongranular leukocyte | 1.88e-10 | 115 |
hematopoietic oligopotent progenitor cell | 3.13e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.13e-10 | 161 |
hematopoietic lineage restricted progenitor cell | 6.67e-10 | 120 |
hematopoietic stem cell | 1.16e-09 | 168 |
hematopoietic cell | 5.34e-09 | 177 |
granulocyte | 3.13e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.29e-17 | 76 |
bone element | 9.34e-16 | 82 |
skeletal element | 4.07e-14 | 90 |
immune system | 1.42e-13 | 93 |
hematopoietic system | 9.65e-13 | 98 |
blood island | 9.65e-13 | 98 |
skeletal system | 1.97e-12 | 100 |
hemolymphoid system | 2.62e-11 | 108 |
medulla oblongata | 3.75e-10 | 3 |
myelencephalon | 3.75e-10 | 3 |
future myelencephalon | 3.75e-10 | 3 |
corpus callosum | 1.41e-08 | 1 |
central nervous system cell part cluster | 1.41e-08 | 1 |
axon tract | 1.41e-08 | 1 |
intercerebral commissure | 1.41e-08 | 1 |
dorsal telencephalic commissure | 1.41e-08 | 1 |
brain white matter | 1.41e-08 | 1 |
brain commissure | 1.41e-08 | 1 |
white matter | 1.41e-08 | 1 |
nervous system commissure | 1.41e-08 | 1 |
cerebral hemisphere white matter | 1.41e-08 | 1 |
substantia nigra | 4.72e-08 | 1 |
midbrain nucleus | 4.72e-08 | 1 |
regional part of midbrain | 4.72e-08 | 1 |
midbrain | 4.72e-08 | 1 |
presumptive midbrain | 4.72e-08 | 1 |
midbrain neural tube | 4.72e-08 | 1 |
lateral plate mesoderm | 1.96e-07 | 203 |
musculoskeletal system | 2.23e-07 | 167 |