FFCP PHASE1:Hg19::chr1:15736359..15736463,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:15736359..15736463,+ to FFCP PHASE1:Hg19::chr1:15736359..15736463,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79180 | |EntrezGene=79180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28670 | |HGNC=28670 | ||
|TSSclassifier=strong | |||
|UniProt=C9JTI6,Q96C19 | |UniProt=C9JTI6,Q96C19 | ||
|association_with_transcript=0bp_to_ENST00000375975,ENST00000375980,NM_024329,uc001awh.2_5end | |||
|cluster_id=chr1:15736359..15736463,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_EFHD2_5end | |||
|id=chr1:15736359..15736463,+ | |||
|ontology_enrichment_celltype=CL:0000738!7.30e-38!140;CL:0000766!4.75e-37!76;CL:0000557!5.65e-32!71;CL:0002087!5.85e-32!119;CL:0002031!2.05e-31!124;CL:0000037!1.29e-29!172;CL:0000566!1.29e-29!172;CL:0002194!5.57e-29!63;CL:0000576!5.57e-29!63;CL:0000040!5.57e-29!63;CL:0000559!5.57e-29!63;CL:0000839!6.10e-29!70;CL:0002009!6.19e-29!65;CL:0002032!1.38e-28!165;CL:0000837!1.38e-28!165;CL:0000988!8.87e-28!182;CL:0002057!9.16e-27!42;CL:0000860!2.90e-26!45;CL:0000763!1.05e-23!112;CL:0000049!1.05e-23!112;CL:0000063!2.07e-08!578;CL:0002078!2.95e-08!44;CL:0000115!5.47e-08!35;CL:0000003!1.91e-07!722;CL:0002371!3.90e-07!591;CL:0002393!7.02e-07!9;CL:0002397!7.02e-07!9;CL:0000094!8.32e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.84e-19;33!CL:0002057;1.84e-19;33!CL:0000473;9.48e-19;39!CL:0000234;9.48e-19;39!CL:0000576;2.83e-17;48!CL:0000766;2.08e-16;69!CL:0002087;9.04e-10;104!CL:0000738;8.63e-09;136!CL:0000763;1.30e-07;100!CL:0000115;4.31e-07;36!CL:0000094;8.30e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.51e-38,72;CL:0000738,1.57e-38,136;CL:0000557,2.36e-33,67;CL:0002087,1.18e-32,115;CL:0002031,4.68e-32,120;CL:0002194,2.07e-30,59;CL:0000576,2.07e-30,59;CL:0000040,2.07e-30,59;CL:0000559,2.07e-30,59;CL:0002009,2.62e-30,61;CL:0000839,3.41e-30,66;CL:0000037,5.74e-30,168;CL:0000473,1.24e-29,48;CL:0000234,1.24e-29,48;CL:0002032,6.00e-29,161;CL:0000837,6.00e-29,161;CL:0000988,8.01e-28,177;CL:0000860,9.16e-27,42;CL:0002057,9.16e-27,42;CL:0000763,3.13e-24,108;CL:0000049,3.13e-24,108;CL:0002078,1.90e-08,45;CL:0000115,3.52e-08,36;CL:0002393,7.02e-07,9;CL:0002397,7.02e-07,9;CL:0000094,8.32e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.99e-19;42!CL:0000049;5.37e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.60e-34!112;UBERON:0002390!3.36e-34!102;UBERON:0003061!3.36e-34!102;UBERON:0002371!1.00e-29!80;UBERON:0001474!3.86e-28!86;UBERON:0004765!4.70e-26!101;UBERON:0001434!4.70e-26!101;UBERON:0003081!5.00e-22!216;UBERON:0002405!3.05e-20!115;UBERON:0002204!1.32e-17!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.37e-35,108;UBERON:0002390,3.93e-35,98;UBERON:0003061,3.93e-35,98;UBERON:0002405,1.74e-31,93;UBERON:0002371,8.12e-31,76;UBERON:0001474,4.53e-29,82;UBERON:0004765,1.13e-27,90;UBERON:0001434,1.41e-25,100;UBERON:0003081,1.72e-20,203;UBERON:0002204,5.58e-17,167;UBERON:0000926,5.09e-10,315;UBERON:0004120,5.09e-10,315;UBERON:0006603,5.09e-10,315 | |||
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| ||
|short_description=p1@EFHD2 | |||
}} | }} |
Latest revision as of 19:06, 17 September 2015
Short description: | p1@EFHD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EFHD2_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000375975, ENST00000375980, NM_024329, uc001awh.2_5end |
EntrezGene: | EFHD2 |
HGNC: | 28670 |
UniProt: | C9JTI6Q96C19 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.51e-38 | 72 |
leukocyte | 1.57e-38 | 136 |
granulocyte monocyte progenitor cell | 2.36e-33 | 67 |
nongranular leukocyte | 1.18e-32 | 115 |
hematopoietic lineage restricted progenitor cell | 4.68e-32 | 120 |
monopoietic cell | 2.07e-30 | 59 |
monocyte | 2.07e-30 | 59 |
monoblast | 2.07e-30 | 59 |
promonocyte | 2.07e-30 | 59 |
macrophage dendritic cell progenitor | 2.62e-30 | 61 |
myeloid lineage restricted progenitor cell | 3.41e-30 | 66 |
hematopoietic stem cell | 5.74e-30 | 168 |
defensive cell | 1.24e-29 | 48 |
phagocyte | 1.24e-29 | 48 |
hematopoietic oligopotent progenitor cell | 6.00e-29 | 161 |
hematopoietic multipotent progenitor cell | 6.00e-29 | 161 |
hematopoietic cell | 8.01e-28 | 177 |
classical monocyte | 9.16e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.16e-27 | 42 |
myeloid cell | 3.13e-24 | 108 |
common myeloid progenitor | 3.13e-24 | 108 |
meso-epithelial cell | 1.90e-08 | 45 |
endothelial cell | 3.52e-08 | 36 |
intermediate monocyte | 7.02e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.02e-07 | 9 |
granulocyte | 8.32e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.37e-35 | 108 |
hematopoietic system | 3.93e-35 | 98 |
blood island | 3.93e-35 | 98 |
immune system | 1.74e-31 | 93 |
bone marrow | 8.12e-31 | 76 |
bone element | 4.53e-29 | 82 |
skeletal element | 1.13e-27 | 90 |
skeletal system | 1.41e-25 | 100 |
lateral plate mesoderm | 1.72e-20 | 203 |
musculoskeletal system | 5.58e-17 | 167 |
mesoderm | 5.09e-10 | 315 |
mesoderm-derived structure | 5.09e-10 | 315 |
presumptive mesoderm | 5.09e-10 | 315 |