FFCP PHASE1:Hg19::chr4:41614882..41614899,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NVB9,Q9UPQ0 | |||
|association_with_transcript=-19bp_to_ENST00000381753,ENST00000396595,ENST00000509454,NM_001112719,NM_001112720,uc003gwb.1,uc003gwc.3,uc003gwd.3,uc011byu.1_5end | |||
|cluster_id=chr4:41614882..41614899,+ | |||
|description=CAGE_peak_12_at_LIMCH1_5end | |||
|id=chr4:41614882..41614899,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.78e-13;82!UBERON:0006241;1.94e-11;3!UBERON:0003057;1.94e-11;3!UBERON:0010122;3.28e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!5.00e-42!86;UBERON:0007284!5.00e-42!86;UBERON:0005743!9.84e-42!86;UBERON:0001049!2.08e-40!57;UBERON:0005068!2.08e-40!57;UBERON:0006241!2.08e-40!57;UBERON:0007135!2.08e-40!57;UBERON:0000073!3.55e-40!94;UBERON:0001016!3.55e-40!94;UBERON:0002346!4.41e-39!90;UBERON:0001017!1.26e-37!82;UBERON:0007023!1.29e-37!115;UBERON:0000955!1.00e-32!69;UBERON:0006238!1.00e-32!69;UBERON:0002616!2.76e-32!59;UBERON:0002020!2.88e-31!34;UBERON:0003528!2.88e-31!34;UBERON:0001893!3.68e-31!34;UBERON:0003056!9.80e-31!61;UBERON:0002791!3.99e-30!33;UBERON:0002780!6.42e-30!41;UBERON:0001890!6.42e-30!41;UBERON:0006240!6.42e-30!41;UBERON:0003080!6.89e-29!42;UBERON:0001869!7.73e-29!32;UBERON:0004121!1.46e-24!169;UBERON:0000924!2.27e-23!173;UBERON:0006601!2.27e-23!173;UBERON:0000033!2.56e-23!123;UBERON:0000153!7.51e-23!129;UBERON:0007811!7.51e-23!129;UBERON:0000956!6.83e-22!25;UBERON:0000203!6.83e-22!25;UBERON:0002619!6.74e-20!22;UBERON:0001950!7.51e-18!20;UBERON:0000064!6.81e-14!219;UBERON:0003076!1.95e-12!15;UBERON:0003057!1.95e-12!15;UBERON:0000025!2.01e-12!194;UBERON:0000475!3.25e-12!365;UBERON:0002308!7.14e-11!9;UBERON:0000125!7.14e-11!9;UBERON:0004111!1.01e-10!241;UBERON:0000062!1.79e-10!511;UBERON:0000477!3.88e-10!286;UBERON:0004732!4.83e-10!13;UBERON:0000483!1.38e-09!309;UBERON:0000481!2.89e-09!347;UBERON:0000119!2.99e-09!312;UBERON:0004733!4.30e-09!12;UBERON:0002028!4.30e-09!12;UBERON:0007277!4.30e-09!12;UBERON:0009663!1.39e-08!7;UBERON:0002420!2.36e-08!9;UBERON:0007245!2.36e-08!9;UBERON:0010009!2.36e-08!9;UBERON:0010011!2.36e-08!9;UBERON:0000454!2.36e-08!9;UBERON:0002298!4.73e-08!8;UBERON:0000200!1.55e-07!6;UBERON:0000468!3.42e-07!659;UBERON:0000467!8.87e-07!625;UBERON:0007625!9.97e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.15e-41;34!UBERON:0002020;6.15e-41;34!UBERON:0001893;2.22e-38;34!UBERON:0000073;5.69e-38;53!UBERON:0002616;5.69e-38;53!UBERON:0002780;1.47e-37;41!UBERON:0001890;1.47e-37;41!UBERON:0001869;1.85e-37;32!UBERON:0002791;7.35e-37;32!UBERON:0002619;3.13e-33;22!UBERON:0001950;5.62e-32;20!UBERON:0000956;6.38e-29;25!UBERON:0000203;6.38e-29;25!UBERON:0001016;6.00e-23;83!UBERON:0001017;1.35e-22;75!UBERON:0000955;1.55e-22;68!UBERON:0000125;8.49e-22;9!UBERON:0002308;8.49e-22;9!UBERON:0002298;1.12e-19;6!UBERON:0004732;8.17e-19;13!UBERON:0002420;1.19e-16;9!UBERON:0007245;1.19e-16;9!UBERON:0010009;1.19e-16;9!UBERON:0010011;1.19e-16;9!UBERON:0000454;1.19e-16;9!UBERON:0004733;2.49e-16;12!UBERON:0002028;2.49e-16;12!UBERON:0009663;7.43e-16;7!UBERON:0007023;5.75e-13;114!UBERON:0002240;1.94e-11;3!UBERON:0005174;1.94e-11;3!UBERON:0001137;1.94e-11;3!UBERON:0001872;5.03e-11;5!UBERON:0002021;5.96e-11;5!UBERON:0001896;7.91e-11;3!UBERON:0005290;7.91e-11;3!UBERON:0000988;1.41e-10;3!UBERON:0011216;1.69e-09;132!UBERON:0010314;2.45e-09;132!UBERON:0000200;7.55e-09;6!UBERON:0002680;8.35e-09;9!UBERON:0001895;8.35e-09;9!UBERON:0002148;8.35e-08;2!UBERON:0006331;8.35e-08;2!UBERON:0009662;8.35e-08;2!UBERON:0001897;9.08e-08;2!UBERON:0010225;9.08e-08;2!UBERON:0005162;1.04e-07;2!UBERON:0000122;1.04e-07;2!UBERON:0000369;1.33e-07;4!UBERON:0002435;1.33e-07;4!UBERON:0000204;1.33e-07;4!UBERON:0001871;1.67e-07;6!UBERON:0001873;3.28e-07;2!UBERON:0001875;3.28e-07;2!UBERON:0006514;3.28e-07;2!UBERON:0000966;8.99e-07;5!UBERON:0005388;8.99e-07;5!UBERON:0001802;8.99e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.52e-75,56;UBERON:0005068,4.52e-75,56;UBERON:0006241,4.52e-75,56;UBERON:0007135,4.52e-75,56;UBERON:0003075,1.70e-70,82;UBERON:0007284,1.70e-70,82;UBERON:0002346,9.48e-67,86;UBERON:0000073,2.99e-66,53;UBERON:0002616,2.99e-66,53;UBERON:0000955,1.13e-55,68;UBERON:0006238,1.13e-55,68;UBERON:0001017,1.34e-54,81;UBERON:0001016,5.70e-54,89;UBERON:0010371,2.01e-53,104;UBERON:0002780,4.22e-50,41;UBERON:0001890,4.22e-50,41;UBERON:0003080,4.22e-50,41;UBERON:0006240,4.22e-50,41;UBERON:0003056,3.35e-49,61;UBERON:0003528,8.32e-48,34;UBERON:0002020,8.32e-48,34;UBERON:0001893,1.38e-47,34;UBERON:0010314,2.78e-46,132;UBERON:0002791,3.69e-42,32;UBERON:0001869,6.14e-42,32;UBERON:0007023,4.10e-39,114;UBERON:0004121,4.59e-33,171;UBERON:0000924,4.59e-33,171;UBERON:0006601,4.59e-33,171;UBERON:0002619,7.23e-33,22;UBERON:0001950,1.40e-31,20;UBERON:0000956,1.33e-28,25;UBERON:0000203,1.33e-28,25;UBERON:0003076,1.99e-25,15;UBERON:0003057,1.99e-25,15;UBERON:0000125,6.19e-22,9;UBERON:0002308,6.19e-22,9;UBERON:0002298,2.95e-20,6;UBERON:0004732,3.34e-19,13;UBERON:0000025,9.85e-19,192;UBERON:0011216,6.85e-18,223;UBERON:0004733,9.78e-17,12;UBERON:0002028,9.78e-17,12;UBERON:0007277,9.78e-17,12;UBERON:0002420,1.48e-16,9;UBERON:0007245,1.48e-16,9;UBERON:0010009,1.48e-16,9;UBERON:0010011,1.48e-16,9;UBERON:0000454,1.48e-16,9;UBERON:0009663,8.58e-16,7;UBERON:0004111,5.37e-14,240;UBERON:0000483,1.49e-13,306;UBERON:0000119,2.58e-13,309;UBERON:0002240,1.70e-11,3;UBERON:0005174,1.70e-11,3;UBERON:0001137,1.70e-11,3;UBERON:0001872,3.79e-11,5;UBERON:0000988,5.06e-11,3;UBERON:0001896,5.79e-11,3;UBERON:0005290,5.79e-11,3;UBERON:0010096,5.79e-11,3;UBERON:0002021,1.07e-10,5;UBERON:0000966,3.24e-09,6;UBERON:0005388,3.24e-09,6;UBERON:0001802,3.24e-09,6;UBERON:0002680,4.57e-09,9;UBERON:0001895,4.57e-09,9;UBERON:0010092,4.57e-09,9;UBERON:0000200,8.08e-09,6;UBERON:0002148,4.77e-08,2;UBERON:0006331,4.77e-08,2;UBERON:0009662,4.77e-08,2;UBERON:0001781,5.74e-08,4;UBERON:0001897,5.86e-08,2;UBERON:0010225,5.86e-08,2;UBERON:0005162,1.23e-07,2;UBERON:0000122,1.23e-07,2;UBERON:0000369,1.56e-07,4;UBERON:0002435,1.56e-07,4;UBERON:0000204,1.56e-07,4;UBERON:0010082,1.56e-07,4;UBERON:0001871,2.84e-07,6;UBERON:0001875,3.30e-07,2;UBERON:0006514,3.30e-07,2;UBERON:0001873,4.00e-07,2;UBERON:0010122,4.00e-07,2 | |||
|phase1_expression=0,0.428201047781966,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.940364164434263,0.286235987131057,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.661743720148475,0.221729397462564,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0.389748020644795,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,1.44331342025273,1.04337364477569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,1.38115775959256,0.561320188866147,0.128139149255701,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0,0,3.84675187674584,0.984043937099117,1.62689197332152,0.103041011647722,9.43165487628937,9.32357349102644,0,0,0,0,0,0,0,0,0,0,0.712256285173899,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,1.05650146756755,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,2.2507106625682,1.11308705022906,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0.269605053441981,0.895105873378046,0,0.394573622547734,0,2.22273980289274,2.90799823828566,2.59750674853184,0,0,0.174919999992391,0,0,0,0.709163045303809,0,0.583209226766509,0,1.77148277162768,1.08536794762867,0,1.76926815889959,1.47773809476774,0.658156191461918,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,1.89898258075224,0.326465616318295,0,0,0,0.530745387020035,0,0.296521128680622,0,0,3.70706231393724,0.802577647298789,2.34264445725339,0,0,0,0.394584402849391,1.20990716048664,0.30607276163049,0.31593289814244,0.150323419414493,0,0,0,0.313932918407225,0,0,0,0,0,0,0.52418000472609,0,0,0.146178634172371,0,0.193978032976839,0,0.677942222341597,0.137041924646751,0,1.89932387867636,0,0,0.640358984218058,0,0,0,0,0,0.99402028452346,0,0.271808412147228,0.418411385249333,0.101998217636322,0,1.20084057741958,1.77976992559591,0,0.859530882839914,0,1.95497680890578,0.458320848023367,0,0.199679000498991,0,0.223171457441873,0.671834724867263,0,0,0,0,0,0.0984274815147488,0,3.97614844904652,0.817220436669454,0,0,0.83088067605837,0,0.77380195455795,2.06548492637284,0,0.157611414598396,0.681909645754975,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0.339936274560377,0,0,5.55916712354667,1.98348902614035,0.171086837884329,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0.544017803369474,0,0.612691153526923,0,0,3.54427271986794,0.976210119215705,0.751145584238999,2.86704597845036,1.66393577305278,3.78788057942439,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0.675769762612291,1.79369063011563,1.72715170865599,0,1.10606748921385,0.194860308839388,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,6.14601424961086,0,0.327628914576042,0,0,0,0,0,0,0,0,0.3062454773532,1.54150140231503,0,1.11743701340006,2.05116364240755,5.04143392443436,1.38314504928436,2.74508597574147,1.42769420259154,0,0,0,0.231051332300676,0,0,0,0.376051641746286,0,0,0,0,0,1.62090203084147,2.34323429584154,0.413373593002368,2.28296916698065,2.7348740450911,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,1.97112225632812,1.84163765975977,0.118193840883968,0,0.549451649953598,0.785577949580009,0.280272163313789,0.913158720509496,0,0,4.21711610642272,0.158013611732727,0,0.347716544605159,0,0,0,0,0,0,0,2.11693525095465,0,0,0,0.223710863595585,0,0,0,0,0,0.485710993059139,0,0,0,0.5647304101948,0,0.150962843566674,0.231522474323834,0.874238242015829,0,0.735444965261716,0,5.10402014498858,2.67341760294377,3.8039015482506,0.169927114687817,0.187967835959707,0.0644578879735772,0,0,0,0,0.730336388246517,0.458729283404541,2.58011249672612,0,1.15585533324555,0.436350690340377,1.5870805215462,0,0,0,0.252332849670158,0.546327859818478,0.126698501011437,0,0,0,0,0.0757786982182394,0.803892390468535,4.1458471972939,1.96522692137601,0.213233981900981,0.23806443146374,0,0,0,0.190941474834495,0,0.653150243690884,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,2.34640942403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| |||
|short_description=p12@LIMCH1 | |||
}} |
Latest revision as of 19:42, 17 September 2015
Short description: | p12@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LIMCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000381753, ENST00000396595, ENST00000509454, NM_001112719, NM_001112720, uc003gwb.1, uc003gwc.3, uc003gwd.3, uc011byu.1_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | Q6NVB9Q9UPQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data