FFCP PHASE1:Hg19::chr15:62352570..62352658,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:62352570..62352658,-
|short_description=p1@VPS13C
|description=CAGE_peak_1_at_VPS13C_5end
|association_with_transcript=0bp_to_ENST00000261517,ENST00000395...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54832 | |EntrezGene=54832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23594 | |HGNC=23594 | ||
|TSSclassifier=strong | |||
|UniProt=Q709C8,F5GZG8 | |UniProt=Q709C8,F5GZG8 | ||
|association_with_transcript=0bp_to_ENST00000261517,ENST00000395896,ENST00000395898,uc002agz.2,uc002aha.2,uc002ahb.1,uc002ahc.1_5end | |||
|cluster_id=chr15:62352570..62352658,- | |||
|coexpression_cluster_id=C3081 | |||
|description=CAGE_peak_1_at_VPS13C_5end | |||
|id=chr15:62352570..62352658,- | |||
|ontology_enrichment_celltype=CL:0000037!1.42e-32!172;CL:0000566!1.42e-32!172;CL:0000738!2.01e-32!140;CL:0002087!6.11e-30!119;CL:0002032!2.16e-29!165;CL:0000837!2.16e-29!165;CL:0000988!2.17e-29!182;CL:0002031!3.05e-29!124;CL:0000542!1.30e-17!53;CL:0000051!1.30e-17!53;CL:0000838!1.72e-17!52;CL:0000557!2.62e-13!71;CL:0000763!7.17e-13!112;CL:0000049!7.17e-13!112;CL:0000839!1.20e-12!70;CL:0000766!1.37e-11!76;CL:0002194!2.29e-11!63;CL:0000576!2.29e-11!63;CL:0000040!2.29e-11!63;CL:0000559!2.29e-11!63;CL:0002009!4.00e-11!65;CL:0000945!2.25e-09!24;CL:0000826!2.25e-09!24;CL:0000791!6.26e-09!18;CL:0000789!6.26e-09!18;CL:0002420!6.26e-09!18;CL:0002419!6.26e-09!18;CL:0000790!6.26e-09!18;CL:0002057!1.03e-08!42;CL:0000236!1.68e-08!14;CL:0000084!6.70e-08!25;CL:0000827!6.70e-08!25;CL:0000860!2.57e-07!45;CL:0000625!5.90e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.14e-10;53!CL:0000945;2.18e-09;24!CL:0002087;3.87e-09;104!CL:0000791;6.33e-09;18!CL:0000789;6.33e-09;18!CL:0002419;6.33e-09;18!CL:0000236;1.66e-08;13!CL:0000084;6.89e-08;25!CL:0000738;1.34e-07;136!CL:0000576;2.29e-07;48!CL:0000625;5.87e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.34e-34,136;CL:0000037,3.06e-34,168;CL:0002087,5.26e-32,115;CL:0000988,1.57e-31,177;CL:0002031,3.28e-31,120;CL:0002032,5.46e-31,161;CL:0000837,5.46e-31,161;CL:0000542,1.30e-17,53;CL:0000051,1.30e-17,53;CL:0000838,1.72e-17,52;CL:0000557,5.69e-15,67;CL:0000839,2.91e-14,66;CL:0000763,4.87e-14,108;CL:0000049,4.87e-14,108;CL:0000766,5.16e-13,72;CL:0002194,5.60e-13,59;CL:0000576,5.60e-13,59;CL:0000040,5.60e-13,59;CL:0000559,5.60e-13,59;CL:0002009,1.13e-12,61;CL:0000473,4.94e-10,48;CL:0000234,4.94e-10,48;CL:0000945,2.25e-09,24;CL:0000826,2.25e-09,24;CL:0000791,6.26e-09,18;CL:0000789,6.26e-09,18;CL:0002420,6.26e-09,18;CL:0002419,6.26e-09,18;CL:0000790,6.26e-09,18;CL:0000860,1.03e-08,42;CL:0002057,1.03e-08,42;CL:0000236,1.68e-08,14;CL:0000084,6.70e-08,25;CL:0000827,6.70e-08,25;CL:0000625,5.90e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.14e-10;53!CL:0000790;6.33e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.05e-21!115;UBERON:0002390!1.25e-16!102;UBERON:0003061!1.25e-16!102;UBERON:0002193!6.01e-16!112;UBERON:0001049!1.14e-11!57;UBERON:0005068!1.14e-11!57;UBERON:0006241!1.14e-11!57;UBERON:0007135!1.14e-11!57;UBERON:0002371!5.11e-11!80;UBERON:0001474!6.85e-11!86;UBERON:0003080!3.54e-10!42;UBERON:0002780!5.79e-10!41;UBERON:0001890!5.79e-10!41;UBERON:0006240!5.79e-10!41;UBERON:0002616!1.95e-09!59;UBERON:0000955!6.44e-09!69;UBERON:0006238!6.44e-09!69;UBERON:0002405!1.64e-08!115;UBERON:0001017!2.30e-08!82;UBERON:0004765!6.19e-08!101;UBERON:0001434!6.19e-08!101;UBERON:0002020!9.99e-08!34;UBERON:0003528!9.99e-08!34;UBERON:0005743!2.74e-07!86;UBERON:0000073!2.85e-07!94;UBERON:0001016!2.85e-07!94;UBERON:0002791!5.20e-07!33;UBERON:0001893!6.44e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.26e-07;41!UBERON:0001890;1.26e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.97e-21,114;UBERON:0002390,3.93e-18,98;UBERON:0003061,3.93e-18,98;UBERON:0002193,2.60e-17,108;UBERON:0002405,2.89e-13,93;UBERON:0002371,2.45e-12,76;UBERON:0001474,3.93e-12,82;UBERON:0001049,1.87e-11,56;UBERON:0005068,1.87e-11,56;UBERON:0006241,1.87e-11,56;UBERON:0007135,1.87e-11,56;UBERON:0000073,2.34e-10,53;UBERON:0002616,2.34e-10,53;UBERON:0002780,5.79e-10,41;UBERON:0001890,5.79e-10,41;UBERON:0003080,5.79e-10,41;UBERON:0006240,5.79e-10,41;UBERON:0004765,6.07e-10,90;UBERON:0000955,1.02e-08,68;UBERON:0006238,1.02e-08,68;UBERON:0001434,3.25e-08,100;UBERON:0001017,3.56e-08,81;UBERON:0001016,4.29e-08,89;UBERON:0003528,9.99e-08,34;UBERON:0002020,9.99e-08,34;UBERON:0002791,5.21e-07,32;UBERON:0001893,6.44e-07,34 | |||
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| ||
|short_description=p1@VPS13C | |||
}} | }} |
Latest revision as of 10:40, 18 September 2015
Short description: | p1@VPS13C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS13C_5end |
Coexpression cluster: | C3081_Mast_CD19_pituitary_CD4_CD8_Peripheral_spinal |
Association with transcript: | 0bp_to_ENST00000261517, ENST00000395896, ENST00000395898, uc002agz.2, uc002aha.2, uc002ahb.1, uc002ahc.1_5end |
EntrezGene: | VPS13C |
HGNC: | 23594 |
UniProt: | Q709C8F5GZG8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.97e-21 | 114 |
hematopoietic system | 3.93e-18 | 98 |
blood island | 3.93e-18 | 98 |
hemolymphoid system | 2.60e-17 | 108 |
immune system | 2.89e-13 | 93 |
bone marrow | 2.45e-12 | 76 |
bone element | 3.93e-12 | 82 |
neural tube | 1.87e-11 | 56 |
neural rod | 1.87e-11 | 56 |
future spinal cord | 1.87e-11 | 56 |
neural keel | 1.87e-11 | 56 |
regional part of nervous system | 2.34e-10 | 53 |
regional part of brain | 2.34e-10 | 53 |
regional part of forebrain | 5.79e-10 | 41 |
forebrain | 5.79e-10 | 41 |
anterior neural tube | 5.79e-10 | 41 |
future forebrain | 5.79e-10 | 41 |
skeletal element | 6.07e-10 | 90 |
brain | 1.02e-08 | 68 |
future brain | 1.02e-08 | 68 |
skeletal system | 3.25e-08 | 100 |
central nervous system | 3.56e-08 | 81 |
nervous system | 4.29e-08 | 89 |
brain grey matter | 9.99e-08 | 34 |
gray matter | 9.99e-08 | 34 |
regional part of telencephalon | 5.21e-07 | 32 |
telencephalon | 6.44e-07 | 34 |