FFCP PHASE1:Hg19::chr12:51663959..51664001,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:51663959..51664001,-
|short_description=p3@SMAGP
|description=CAGE_peak_3_at_SMAGP_5end
|association_with_transcript=0bp_to_ENST00000398453,NM_001033873,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57228 | |EntrezGene=57228 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26918 | |HGNC=26918 | ||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |UniProt=Q0VAQ4 | ||
|association_with_transcript=0bp_to_ENST00000398453,NM_001033873,uc001ryd.1_5end | |||
|cluster_id=chr12:51663959..51664001,- | |||
|description=CAGE_peak_3_at_SMAGP_5end | |||
|id=chr12:51663959..51664001,- | |||
|ontology_enrichment_celltype=CL:0000066!7.17e-21!254;CL:0002076!1.40e-15!43;CL:0000223!1.47e-13!59;CL:0002368!7.69e-08!13;CL:0002251!4.25e-07!21;CL:0002321!4.86e-07!248;CL:0000220!9.61e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.35e-15;42!CL:0002368;1.83e-10;13!CL:0002251;1.38e-09;20!CL:0002202;7.80e-08;9!CL:0002632;7.80e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.11e-20,42;CL:0000066,2.97e-20,253;CL:0000223,3.96e-17,58;CL:0002368,1.59e-10,13;CL:0002251,8.66e-10,20;CL:0002202,7.37e-08,9;CL:0002632,7.37e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.20e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.93e-09!106;DOID:1749!8.36e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.27e-09;14!DOID:299;5.93e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.25e-11,106;DOID:1749,1.46e-09,14;DOID:299,4.90e-08,25;DOID:0050687,1.72e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.56e-18!169;UBERON:0000925!1.56e-18!169;UBERON:0006595!1.56e-18!169;UBERON:0000464!2.26e-16!104;UBERON:0003104!1.39e-14!238;UBERON:0009142!1.39e-14!238;UBERON:0000466!2.08e-14!126;UBERON:0001007!9.42e-14!155;UBERON:0001555!9.42e-14!155;UBERON:0007026!9.42e-14!155;UBERON:0000077!8.76e-13!130;UBERON:0004921!2.41e-11!129;UBERON:0004185!2.41e-11!129;UBERON:0002100!2.58e-11!216;UBERON:0002553!5.99e-10!70;UBERON:0000481!2.28e-09!347;UBERON:0005156!2.82e-09!59;UBERON:0000990!2.82e-09!59;UBERON:0003102!5.23e-09!95;UBERON:0001004!8.85e-09!72;UBERON:0003133!1.26e-08!48;UBERON:0000468!1.41e-08!659;UBERON:0001008!4.09e-08!45;UBERON:0005177!5.95e-08!107;UBERON:0000475!6.00e-08!365;UBERON:0003886!7.62e-08!63;UBERON:0006554!8.22e-08!44;UBERON:0000915!1.11e-07!52;UBERON:0000467!1.27e-07!625;UBERON:0005181!1.71e-07!35;UBERON:0000161!1.87e-07!35;UBERON:0000480!1.92e-07!626;UBERON:0005178!1.94e-07!34;UBERON:0002224!1.94e-07!34;UBERON:0003100!2.17e-07!41;UBERON:0001041!3.56e-07!98;UBERON:0000058!3.73e-07!26;UBERON:0009569!4.37e-07!113;UBERON:0005631!5.99e-07!14;UBERON:0000158!5.99e-07!14;UBERON:0000062!9.26e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.39e-10;33!UBERON:0006554;4.69e-08;30!UBERON:0001008;4.69e-08;30!UBERON:0005178;5.66e-08;34!UBERON:0002224;5.66e-08;34!UBERON:0001555;1.25e-07;54!UBERON:0005181;6.62e-07;35!UBERON:0000165;7.52e-07;28!UBERON:0007196;7.61e-07;15!UBERON:0001558;7.61e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.82e-19,160;UBERON:0000925,8.82e-19,160;UBERON:0006595,8.82e-19,160;UBERON:0001007,8.97e-14,145;UBERON:0001555,8.97e-14,145;UBERON:0007026,8.97e-14,145;UBERON:0004921,3.56e-12,118;UBERON:0001008,1.23e-11,48;UBERON:0006554,3.34e-11,47;UBERON:0001004,1.09e-10,74;UBERON:0005177,7.09e-10,101;UBERON:0000161,2.44e-09,36;UBERON:0005631,5.40e-09,14;UBERON:0000158,5.40e-09,14;UBERON:0005178,1.51e-08,34;UBERON:0002224,1.51e-08,34;UBERON:0000915,1.58e-08,52;UBERON:0000166,1.74e-08,22;UBERON:0009569,1.88e-08,112;UBERON:0005181,4.35e-08,35;UBERON:0005153,1.55e-07,37;UBERON:0005156,1.88e-07,59;UBERON:0000990,1.88e-07,59;UBERON:0005157,3.15e-07,47;UBERON:0000165,3.36e-07,29;UBERON:0000930,3.36e-07,29;UBERON:0003133,3.51e-07,48;UBERON:0002100,3.68e-07,199;UBERON:0003102,4.15e-07,99;UBERON:0001041,5.85e-07,87;UBERON:0002553,7.62e-07,61;UBERON:0007196,8.56e-07,15;UBERON:0001558,8.56e-07,15;UBERON:0004175,9.97e-07,25 | |||
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|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,0,7.86348596804828,38.3790642384835,8.08233076881637,21.8926591929616,0.37129905888014,0,0,0.602694528023977,2.92124036154949,0.975865597581014,1.23121058076788,1.02000345622126,0.626909442956176,0,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0.383829398097213,0.77408061658038,11.0330546937471,8.73497164456925,16.6389304575054,0,0,0,0,0.401088894940283,0.434021741431704,0,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0.211255286311942,0,0,0,0,0,0,0.19891667719909,0,1.75996244461323,0.546138611262131,0,0,0.400395987036012,0,1.32208974556972,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0.201606743224732,0.802320587350522,0.434473211648397,0,0.670700859703636,0.383587685530591,1.44575660953827,0,0,0,0.486634870302636,0.472674085820339,1.55210578223795,0.614843499851882,1.83370705696798,22.9506031624302,32.2582465222454,0,0,0.26591592103773,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,0,0.626984899610432,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0.803697554556718,0.22452937262617,0.337834441449967,0,0.949265659568129,1.28241220751285,0,0,13.9550096685611,0,0.379891534993739,0.397227542439656,0.573673241497627,0.709336764396714,0.560677600142307,0,0.74000264525148,0.933633106199299,0.538842688278752,0.653847612453835,0,0,1.17160715916898,0.624320153660641,2.85235910772225,3.13842229158782,0.822041490506354,0.971237666208789,1.40450806702248,1.02077085627447,0.368502951935304,0.309977343527296,0,0,0,1.43723628363248,0.673344455816265,1.37630371859161,0.554128230968366,0.877955241761676,1.5324389789951,0.45071417671979,0.567160915800105,0.538168907066586,0.427114777637135,0.423863802319124,0,1.03052529238439,0.257640540045629,0.744467425326359,0.675105328965065,1.46155507741798,0.757301322732344,0.460249493211497,0.646584227275248,1.06502877754984,0.906768884048762,0,5.9910864480622,4.09119180886252,3.44165514466805,1.58565817968474,1.98794652482228,2.20768491452085,3.31715376049185,2.52320850875628,0.36497735907583,0,0,1.38134921352481,1.85747171212792,0.721879481669586,0.354920400119532,0.168584690078102,0.482022059766964,0.110293972732394,0,0,0.539325232640658,0.196221465125346,0.38474715694639,0.738155454624648,0,0,1.47008711385542,1.26755034821831,0,0,0,14.0206819939149,0.686271241194102,7.35326912237791,7.86812272803337,5.12697759299317,1.94435734832912,0.651616610620649,3.11980435583874,1.44331342025273,0.463721619900307,0.70445216541493,0.433099343283221,0,0.190254152234598,18.9649055510226,7.72637545885385,0.246217006087397,0,0.297262324577456,0.93733833986777,2.51973192298289,2.55195175036296,3.85101647622248,3.77824120068151,5.75074018747817,4.43396914106349,0.264145302039678,0.621984346622316,0.576479813667846,0.6312121671319,0,0,0,0,0.102827492703324,0,0,0.784917590417525,1.74384027533312,1.39342743059805,2.06834745212444,0,1.690605505112,0.26593811658487,1.04007436911366,2.57207374262142,7.09245660116391,3.46348832720929,0.142977993658148,0,0.823240336780769,0.325736184293735,0,0,0.904318131178758,0.871533458600294,0.199945982364114,0,0,0,0.718874566474748,0,0,0.868687840005475,1.43833425785268,0.537182889719687,0,0.394061520403854,0.862510299438069,0.385029108839245,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0.623912584592421,1.60586089917446,0.630809660135739,0.468565659970853,1.50473049863859,0,0,0.664225598535437,2.39679919104214,0.955719759148911,0.391602314925481,0.343143423810856,0,0,0.106727557803444,5.15316871458641,8.32177197552485,6.95497674658265,0.248107807818777,0.306923946576125,0,0.512556597022804,0,0.482561763430822,0,1.07946785661859,1.59805552781814,1.14978018419333,0,1.16210378459959,11.6025071607957,7.81975234182811,4.69613043573071,0.459257792658427,0.364182336013434,0.262248829918848,5.86559496779635,2.15642943892361,1.56869953835371,2.92278449306521,0.949964660035881,1.13733384070897,2.2112181685947,1.72732732881711,0,1.35473218771926,1.50506932156456,5.3524017339458,5.81753206250107,2.46262230194396,0,0,0.512900250232778,0,0.325378394664303,9.99497812982906,0.0915694648183434,0.082509499920588,5.16838984196555,18.2016868890226,0,0.676695028044854,0.770243085573222,0.307007349452259,1.10269257987624,0.644521469209642,0.580066775656914,1.19317278382541,0.356128142586949,9.25595526021477,12.4923543787319,2.67986696238627,14.4655626623436,0.929691098594572,1.88887408098384,1.3940745403212,0.616067160352178,1.59691809095107,0.869932992075073,0.74129687641568,1.14499909393593,0.372158369359667,0.632758849437452,0.190630193923825,0.767693373934002,0.855877976067841,0.318203247925937,0.78494864019923,0.359744915166629,0,0.471249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| ||
|short_description=p3@SMAGP | |||
}} | }} |
Latest revision as of 20:01, 18 September 2015
Short description: | p3@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMAGP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000398453, NM_001033873, uc001ryd.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.11e-20 | 42 |
epithelial cell | 2.97e-20 | 253 |
endodermal cell | 3.96e-17 | 58 |
respiratory epithelial cell | 1.59e-10 | 13 |
epithelial cell of alimentary canal | 8.66e-10 | 20 |
epithelial cell of tracheobronchial tree | 7.37e-08 | 9 |
epithelial cell of lower respiratory tract | 7.37e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.82e-19 | 160 |
endoderm | 8.82e-19 | 160 |
presumptive endoderm | 8.82e-19 | 160 |
digestive system | 8.97e-14 | 145 |
digestive tract | 8.97e-14 | 145 |
primitive gut | 8.97e-14 | 145 |
subdivision of digestive tract | 3.56e-12 | 118 |
renal system | 1.23e-11 | 48 |
urinary system structure | 3.34e-11 | 47 |
respiratory system | 1.09e-10 | 74 |
trunk region element | 7.09e-10 | 101 |
orifice | 2.44e-09 | 36 |
extraembryonic membrane | 5.40e-09 | 14 |
membranous layer | 5.40e-09 | 14 |
thoracic cavity element | 1.51e-08 | 34 |
thoracic cavity | 1.51e-08 | 34 |
thoracic segment of trunk | 1.58e-08 | 52 |
oral opening | 1.74e-08 | 22 |
subdivision of trunk | 1.88e-08 | 112 |
thoracic segment organ | 4.35e-08 | 35 |
epithelial bud | 1.55e-07 | 37 |
reproductive structure | 1.88e-07 | 59 |
reproductive system | 1.88e-07 | 59 |
epithelial fold | 3.15e-07 | 47 |
mouth | 3.36e-07 | 29 |
stomodeum | 3.36e-07 | 29 |
reproductive organ | 3.51e-07 | 48 |
trunk | 3.68e-07 | 199 |
surface structure | 4.15e-07 | 99 |
foregut | 5.85e-07 | 87 |
anatomical cavity | 7.62e-07 | 61 |
tracheobronchial tree | 8.56e-07 | 15 |
lower respiratory tract | 8.56e-07 | 15 |
internal genitalia | 9.97e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.25e-11 | 106 |
squamous cell carcinoma | 1.46e-09 | 14 |
adenocarcinoma | 4.90e-08 | 25 |
cell type cancer | 1.72e-07 | 143 |