FFCP PHASE1:Hg19::chr12:52301175..52301188,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52301175..52301188,+
|short_description=p4@ACVRL1
|description=CAGE_peak_4_at_ACVRL1_5end
|association_with_transcript=-13bp_to_ENST00000267008,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=94 | |EntrezGene=94 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=175 | |HGNC=175 | ||
|TSSclassifier=strong | |||
|UniProt=P37023 | |UniProt=P37023 | ||
|association_with_transcript=-13bp_to_ENST00000267008,ENST00000388922,NM_000020,uc001rzj.2_5end | |||
|cluster_id=chr12:52301175..52301188,+ | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_4_at_ACVRL1_5end | |||
|id=chr12:52301175..52301188,+ | |||
|ontology_enrichment_celltype=CL:0000115!2.09e-25!35;CL:0002139!1.46e-23!24;CL:0002078!1.14e-19!44;CL:0000071!3.91e-18!18;CL:0002546!3.91e-18!18;CL:0000222!1.40e-15!119;CL:0000213!4.36e-11!57;CL:0000215!4.36e-11!57;CL:1000413!4.92e-10!9;CL:0002494!6.05e-09!16;CL:0000057!7.14e-09!75;CL:0002570!2.92e-07!8;CL:0002544!3.87e-07!6;CL:0000183!5.62e-07!59;CL:0005020!5.63e-07!6;CL:0002138!5.63e-07!6;CL:0005022!5.63e-07!6;CL:0002543!6.46e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.88e-48;24!CL:0000115;5.84e-41;36!CL:0000071;1.61e-36;18!CL:0002078;1.46e-23;45!CL:1000413;2.07e-19;9!CL:0000213;1.68e-16;58!CL:0000215;1.68e-16;58!CL:0002544;2.54e-13;6!CL:0002138;5.68e-13;6!CL:0002543;8.21e-13;6!CL:0002570;1.36e-10;8!CL:0002494;5.83e-08;16!CL:1000746;1.02e-07;7!CL:1000612;1.02e-07;7!CL:0002188;1.07e-07;5!CL:0002144;1.47e-07;3!CL:0002541;3.03e-07;3!CL:0002618;7.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.76e-48,36;CL:0002139,4.85e-48,24;CL:0002078,9.71e-37,45;CL:0000071,1.59e-36,18;CL:0002546,1.59e-36,18;CL:0000213,2.83e-26,58;CL:0000215,2.83e-26,58;CL:1000413,2.14e-19,9;CL:0000222,6.13e-18,121;CL:0002544,2.61e-13,6;CL:0005020,5.71e-13,6;CL:0002138,5.71e-13,6;CL:0005022,5.71e-13,6;CL:0002543,7.59e-13,6;CL:0002570,1.09e-10,8;CL:0002494,6.84e-08,16;CL:1000746,8.91e-08,7;CL:1000612,8.91e-08,7;CL:0002188,1.07e-07,5;CL:0002144,1.53e-07,3;CL:0002541,3.12e-07,3;CL:0002618,6.75e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.61e-36;18!CL:0005022;5.68e-13;6!CL:0000222;2.39e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!6.94e-29!113;UBERON:0004872!1.09e-28!84;UBERON:0002049!1.58e-27!79;UBERON:0007798!1.58e-27!79;UBERON:0004535!1.68e-27!110;UBERON:0000055!3.14e-26!69;UBERON:0004111!1.33e-25!241;UBERON:0000025!2.10e-24!194;UBERON:0003914!5.92e-24!118;UBERON:0000477!3.50e-23!286;UBERON:0001981!4.96e-21!60;UBERON:0007500!4.96e-21!60;UBERON:0004537!4.96e-21!60;UBERON:0006965!4.96e-21!60;UBERON:0000119!1.19e-19!312;UBERON:0000483!2.91e-19!309;UBERON:0001986!3.91e-18!18;UBERON:0004638!3.91e-18!18;UBERON:0004852!3.91e-18!18;UBERON:0007023!2.46e-16!115;UBERON:0007100!3.30e-15!27;UBERON:0000948!6.70e-14!24;UBERON:0005498!6.70e-14!24;UBERON:0004140!6.70e-14!24;UBERON:0009881!6.70e-14!24;UBERON:0004141!6.70e-14!24;UBERON:0003084!6.70e-14!24;UBERON:0007005!6.70e-14!24;UBERON:0004139!6.70e-14!24;UBERON:0004291!6.70e-14!24;UBERON:0003103!1.08e-13!69;UBERON:0000487!2.52e-13!22;UBERON:0000468!3.63e-12!659;UBERON:0006914!5.61e-12!25;UBERON:0000467!8.45e-12!625;UBERON:0000480!1.12e-11!626;UBERON:0001637!8.63e-11!42;UBERON:0003509!8.63e-11!42;UBERON:0004572!8.63e-11!42;UBERON:0000490!3.00e-10!138;UBERON:0003915!4.92e-10!9;UBERON:0004700!4.92e-10!9;UBERON:0001917!4.92e-10!9;UBERON:0000475!2.55e-09!365;UBERON:0002465!8.91e-09!10;UBERON:0000947!1.27e-08!21;UBERON:0010191!1.27e-08!21;UBERON:0004573!1.31e-08!33;UBERON:0004571!1.31e-08!33;UBERON:0004290!3.00e-08!70;UBERON:0002385!5.49e-08!63;UBERON:0001015!5.49e-08!63;UBERON:0000383!5.49e-08!63;UBERON:0001013!5.57e-08!14;UBERON:0001473!6.97e-08!8;UBERON:0004536!6.97e-08!8;UBERON:0006558!6.97e-08!8;UBERON:0001134!1.72e-07!61;UBERON:0002036!1.72e-07!61;UBERON:0003082!1.72e-07!61;UBERON:0001638!2.12e-07!9;UBERON:0003920!2.12e-07!9;UBERON:0004582!2.12e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.61e-36;18!UBERON:0001986;1.61e-36;18!UBERON:0004852;1.61e-36;18!UBERON:0000487;8.31e-29;22!UBERON:0006914;1.18e-24;25!UBERON:0000055;4.91e-20;65!UBERON:0003915;2.07e-19;9!UBERON:0004700;2.07e-19;9!UBERON:0001917;2.07e-19;9!UBERON:0007500;7.40e-18;56!UBERON:0001981;7.40e-18;56!UBERON:0004537;7.40e-18;56!UBERON:0000490;4.93e-16;33!UBERON:0002049;6.66e-13;75!UBERON:0007798;6.66e-13;75!UBERON:0003914;7.89e-13;74!UBERON:0001637;8.39e-13;42!UBERON:0003509;8.39e-13;42!UBERON:0004572;8.39e-13;42!UBERON:0001638;9.78e-11;9!UBERON:0003920;9.78e-11;9!UBERON:0004582;9.78e-11;9!UBERON:0000025;2.85e-10;93!UBERON:0004573;5.61e-10;33!UBERON:0004571;5.61e-10;33!UBERON:0001013;1.57e-09;14!UBERON:0007100;1.69e-09;25!UBERON:0000948;1.69e-09;22!UBERON:0001473;1.76e-09;8!UBERON:0004536;1.76e-09;8!UBERON:0006558;1.76e-09;8!UBERON:0004535;2.53e-09;109!UBERON:0001009;1.71e-08;112!UBERON:0000947;6.22e-08;21!UBERON:0010191;6.22e-08;21!UBERON:0000074;1.02e-07;7!UBERON:0001229;1.02e-07;7!UBERON:0010523;1.47e-07;3!UBERON:0001915;1.47e-07;3!UBERON:0001982;1.47e-07;3!UBERON:0002465;2.18e-07;10!UBERON:0003124;3.03e-07;3!UBERON:0000920;3.03e-07;3!UBERON:0004111;8.51e-07;130 | |||
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| ||
|short_description=p4@ACVRL1 | |||
}} | }} |
Latest revision as of 20:42, 18 September 2015
Short description: | p4@ACVRL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ACVRL1_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -13bp_to_ENST00000267008, ENST00000388922, NM_000020, uc001rzj.2_5end |
EntrezGene: | ACVRL1 |
HGNC: | 175 |
UniProt: | P37023 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.76e-48 | 36 |
endothelial cell of vascular tree | 4.85e-48 | 24 |
meso-epithelial cell | 9.71e-37 | 45 |
blood vessel endothelial cell | 1.59e-36 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.59e-36 | 18 |
lining cell | 2.83e-26 | 58 |
barrier cell | 2.83e-26 | 58 |
endothelial cell of artery | 2.14e-19 | 9 |
mesodermal cell | 6.13e-18 | 121 |
aortic endothelial cell | 2.61e-13 | 6 |
lymphangioblast | 5.71e-13 | 6 |
endothelial cell of lymphatic vessel | 5.71e-13 | 6 |
vascular lymphangioblast | 5.71e-13 | 6 |
vein endothelial cell | 7.59e-13 | 6 |
mesenchymal stem cell of adipose | 1.09e-10 | 8 |
cardiocyte | 6.84e-08 | 16 |
glomerular cell | 8.91e-08 | 7 |
kidney corpuscule cell | 8.91e-08 | 7 |
glomerular endothelial cell | 1.07e-07 | 5 |
capillary endothelial cell | 1.53e-07 | 3 |
chorionic membrane mesenchymal stem cell | 3.12e-07 | 3 |
endothelial cell of umbilical vein | 6.75e-07 | 3 |