FFCP PHASE1:Hg19::chr1:68915610..68915645,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6121 | |EntrezGene=6121 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10294 | |HGNC=10294 | ||
|TSSclassifier=strong | |||
|UniProt=Q16518 | |UniProt=Q16518 | ||
|association_with_transcript=0bp_to_ENST00000262340,NM_000329,uc001dei.1_5end | |association_with_transcript=0bp_to_ENST00000262340,NM_000329,uc001dei.1_5end | ||
|cluster_id=chr1:68915610..68915645,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_1_at_RPE65_5end | |description=CAGE_peak_1_at_RPE65_5end | ||
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|ontology_enrichment_celltype=CL:0000128!1.42e-10!7;CL:0000126!1.42e-10!7;CL:0000127!1.42e-10!7;CL:0002453!1.42e-10!7;CL:0002319!6.10e-09!25 | |ontology_enrichment_celltype=CL:0000128!1.42e-10!7;CL:0000126!1.42e-10!7;CL:0000127!1.42e-10!7;CL:0002453!1.42e-10!7;CL:0002319!6.10e-09!25 | ||
|ontology_enrichment_celltype_v019=CL:0002319;4.49e-14;25!CL:0000128;9.54e-11;7!CL:0000126;9.54e-11;7!CL:0000127;9.54e-11;7!CL:0002605;1.43e-10;3!CL:0000064;6.61e-10;3!CL:0000067;6.61e-10;3!CL:0005012;6.61e-10;3!CL:0002304;6.61e-10;3!CL:0002586;8.27e-10;3!CL:0000243;6.67e-08;15!CL:0000125;6.67e-08;15!CL:0000047;1.24e-07;2!CL:0000149;1.91e-07;4!CL:0000095;5.90e-07;17 | |ontology_enrichment_celltype_v019=CL:0002319;4.49e-14;25!CL:0000128;9.54e-11;7!CL:0000126;9.54e-11;7!CL:0000127;9.54e-11;7!CL:0002605;1.43e-10;3!CL:0000064;6.61e-10;3!CL:0000067;6.61e-10;3!CL:0005012;6.61e-10;3!CL:0002304;6.61e-10;3!CL:0002586;8.27e-10;3!CL:0000243;6.67e-08;15!CL:0000125;6.67e-08;15!CL:0000047;1.24e-07;2!CL:0000149;1.91e-07;4!CL:0000095;5.90e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.71e-14,25;CL:0000128,9.37e-11,7;CL:0000126,9.37e-11,7;CL:0000127,9.37e-11,7;CL:0002453,9.37e-11,7;CL:0002605,1.44e-10,3;CL:0000047,5.32e-10,8;CL:0000064,6.82e-10,3;CL:0000067,6.82e-10,3;CL:0005012,6.82e-10,3;CL:0002304,6.82e-10,3;CL:0002586,8.16e-10,3;CL:0000243,6.83e-08,15;CL:0000125,6.83e-08,15;CL:0000030,6.83e-08,15;CL:0000339,6.83e-08,15;CL:0000133,7.74e-08,59;CL:0000149,1.89e-07,4;CL:0000095,6.02e-07,17;CL:0000123,6.02e-07,17;CL:0000306,9.01e-07,4;CL:0002222,9.01e-07,4;CL:0002224,9.01e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.04e-10;3!UBERON:0003057;9.04e-10;3!UBERON:0006601;1.46e-08;82!CL:0000339;6.67e-08;15!UBERON:0007297;2.91e-07;2 | |ontology_enrichment_development_v019=UBERON:0006241;9.04e-10;3!UBERON:0003057;9.04e-10;3!UBERON:0006601;1.46e-08;82!CL:0000339;6.67e-08;15!UBERON:0007297;2.91e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!6.56e-64!86;UBERON:0001017!5.14e-58!82;UBERON:0003075!3.83e-57!86;UBERON:0007284!3.83e-57!86;UBERON:0000073!7.26e-56!94;UBERON:0001016!7.26e-56!94;UBERON:0002346!1.12e-53!90;UBERON:0001049!7.33e-52!57;UBERON:0005068!7.33e-52!57;UBERON:0006241!7.33e-52!57;UBERON:0007135!7.33e-52!57;UBERON:0000955!4.43e-47!69;UBERON:0006238!4.43e-47!69;UBERON:0002616!4.74e-46!59;UBERON:0003056!1.23e-41!61;UBERON:0007023!5.42e-41!115;UBERON:0000153!8.24e-40!129;UBERON:0007811!8.24e-40!129;UBERON:0000033!2.02e-37!123;UBERON:0002780!7.03e-36!41;UBERON:0001890!7.03e-36!41;UBERON:0006240!7.03e-36!41;UBERON:0004121!2.98e-35!169;UBERON:0003080!9.20e-35!42;UBERON:0000924!6.81e-34!173;UBERON:0006601!6.81e-34!173;UBERON:0002020!4.38e-29!34;UBERON:0003528!4.38e-29!34;UBERON:0001893!6.37e-29!34;UBERON:0002791!9.45e-28!33;UBERON:0001869!4.01e-26!32;UBERON:0000956!1.48e-20!25;UBERON:0000203!1.48e-20!25;UBERON:0003076!5.13e-18!15;UBERON:0003057!5.13e-18!15;UBERON:0002619!2.46e-16!22;UBERON:0001950!5.09e-14!20;UBERON:0004733!8.39e-14!12;UBERON:0002028!8.39e-14!12;UBERON:0007277!8.39e-14!12;UBERON:0000475!8.50e-14!365;UBERON:0000481!1.13e-12!347;UBERON:0004732!1.65e-12!13;UBERON:0000922!2.88e-12!612;UBERON:0000483!6.78e-12!309;UBERON:0000064!1.10e-11!219;UBERON:0000477!1.17e-11!286;UBERON:0000119!1.41e-11!312;UBERON:0000025!1.55e-11!194;UBERON:0000062!1.62e-11!511;UBERON:0007625!3.94e-11!11;UBERON:0002050!5.07e-11!605;UBERON:0005423!5.07e-11!605;UBERON:0000923!1.57e-10!604;UBERON:0005291!1.57e-10!604;UBERON:0006598!1.57e-10!604;UBERON:0002532!1.57e-10!604;UBERON:0004111!2.24e-10!241;UBERON:0002298!3.50e-10!8;UBERON:0002308!5.14e-10!9;UBERON:0000125!5.14e-10!9;UBERON:0000970!8.53e-10!20;UBERON:0002680!1.35e-09!9;UBERON:0001895!1.35e-09!9;UBERON:0010092!1.35e-09!9;UBERON:0000468!1.72e-09!659;UBERON:0000020!1.72e-09!23;UBERON:0002104!3.63e-09!21;UBERON:0000966!5.80e-09!5;UBERON:0005388!5.80e-09!5;UBERON:0001802!5.80e-09!5;UBERON:0001032!6.08e-09!24;UBERON:0004456!6.08e-09!24;UBERON:0000467!1.29e-08!625;UBERON:0000019!1.39e-08!19;UBERON:0000047!1.39e-08!19;UBERON:0004088!1.39e-08!19;UBERON:0003072!1.39e-08!19;UBERON:0003071!1.39e-08!19;UBERON:0004128!1.39e-08!19;UBERON:0000480!1.50e-08!626;UBERON:0001894!2.34e-08!7;UBERON:0006222!2.34e-08!7;UBERON:0000063!6.82e-08!97;UBERON:0002021!1.04e-07!5;UBERON:0001456!1.74e-07!21;UBERON:0009663!2.92e-07!7;UBERON:0002420!3.91e-07!9;UBERON:0007245!3.91e-07!9;UBERON:0010009!3.91e-07!9;UBERON:0010011!3.91e-07!9;UBERON:0000454!3.91e-07!9 | |ontology_enrichment_uberon=UBERON:0005743!6.56e-64!86;UBERON:0001017!5.14e-58!82;UBERON:0003075!3.83e-57!86;UBERON:0007284!3.83e-57!86;UBERON:0000073!7.26e-56!94;UBERON:0001016!7.26e-56!94;UBERON:0002346!1.12e-53!90;UBERON:0001049!7.33e-52!57;UBERON:0005068!7.33e-52!57;UBERON:0006241!7.33e-52!57;UBERON:0007135!7.33e-52!57;UBERON:0000955!4.43e-47!69;UBERON:0006238!4.43e-47!69;UBERON:0002616!4.74e-46!59;UBERON:0003056!1.23e-41!61;UBERON:0007023!5.42e-41!115;UBERON:0000153!8.24e-40!129;UBERON:0007811!8.24e-40!129;UBERON:0000033!2.02e-37!123;UBERON:0002780!7.03e-36!41;UBERON:0001890!7.03e-36!41;UBERON:0006240!7.03e-36!41;UBERON:0004121!2.98e-35!169;UBERON:0003080!9.20e-35!42;UBERON:0000924!6.81e-34!173;UBERON:0006601!6.81e-34!173;UBERON:0002020!4.38e-29!34;UBERON:0003528!4.38e-29!34;UBERON:0001893!6.37e-29!34;UBERON:0002791!9.45e-28!33;UBERON:0001869!4.01e-26!32;UBERON:0000956!1.48e-20!25;UBERON:0000203!1.48e-20!25;UBERON:0003076!5.13e-18!15;UBERON:0003057!5.13e-18!15;UBERON:0002619!2.46e-16!22;UBERON:0001950!5.09e-14!20;UBERON:0004733!8.39e-14!12;UBERON:0002028!8.39e-14!12;UBERON:0007277!8.39e-14!12;UBERON:0000475!8.50e-14!365;UBERON:0000481!1.13e-12!347;UBERON:0004732!1.65e-12!13;UBERON:0000922!2.88e-12!612;UBERON:0000483!6.78e-12!309;UBERON:0000064!1.10e-11!219;UBERON:0000477!1.17e-11!286;UBERON:0000119!1.41e-11!312;UBERON:0000025!1.55e-11!194;UBERON:0000062!1.62e-11!511;UBERON:0007625!3.94e-11!11;UBERON:0002050!5.07e-11!605;UBERON:0005423!5.07e-11!605;UBERON:0000923!1.57e-10!604;UBERON:0005291!1.57e-10!604;UBERON:0006598!1.57e-10!604;UBERON:0002532!1.57e-10!604;UBERON:0004111!2.24e-10!241;UBERON:0002298!3.50e-10!8;UBERON:0002308!5.14e-10!9;UBERON:0000125!5.14e-10!9;UBERON:0000970!8.53e-10!20;UBERON:0002680!1.35e-09!9;UBERON:0001895!1.35e-09!9;UBERON:0010092!1.35e-09!9;UBERON:0000468!1.72e-09!659;UBERON:0000020!1.72e-09!23;UBERON:0002104!3.63e-09!21;UBERON:0000966!5.80e-09!5;UBERON:0005388!5.80e-09!5;UBERON:0001802!5.80e-09!5;UBERON:0001032!6.08e-09!24;UBERON:0004456!6.08e-09!24;UBERON:0000467!1.29e-08!625;UBERON:0000019!1.39e-08!19;UBERON:0000047!1.39e-08!19;UBERON:0004088!1.39e-08!19;UBERON:0003072!1.39e-08!19;UBERON:0003071!1.39e-08!19;UBERON:0004128!1.39e-08!19;UBERON:0000480!1.50e-08!626;UBERON:0001894!2.34e-08!7;UBERON:0006222!2.34e-08!7;UBERON:0000063!6.82e-08!97;UBERON:0002021!1.04e-07!5;UBERON:0001456!1.74e-07!21;UBERON:0009663!2.92e-07!7;UBERON:0002420!3.91e-07!9;UBERON:0007245!3.91e-07!9;UBERON:0010009!3.91e-07!9;UBERON:0010011!3.91e-07!9;UBERON:0000454!3.91e-07!9 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|short_description=p1@RPE65 | |short_description=p1@RPE65 | ||
}} | }} |
Latest revision as of 03:08, 19 September 2015
Short description: | p1@RPE65 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPE65_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000262340, NM_000329, uc001dei.1_5end |
EntrezGene: | RPE65 |
HGNC: | 10294 |
UniProt: | Q16518 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.71e-14 | 25 |
oligodendrocyte | 9.37e-11 | 7 |
macroglial cell | 9.37e-11 | 7 |
astrocyte | 9.37e-11 | 7 |
oligodendrocyte precursor cell | 9.37e-11 | 7 |
astrocyte of the cerebral cortex | 1.44e-10 | 3 |
neuronal stem cell | 5.32e-10 | 8 |
ciliated cell | 6.82e-10 | 3 |
ciliated epithelial cell | 6.82e-10 | 3 |
multi-ciliated epithelial cell | 6.82e-10 | 3 |
non-pigmented ciliary epithelial cell | 6.82e-10 | 3 |
retinal pigment epithelial cell | 8.16e-10 | 3 |
glial cell (sensu Vertebrata) | 6.83e-08 | 15 |
glial cell | 6.83e-08 | 15 |
glioblast | 6.83e-08 | 15 |
glioblast (sensu Vertebrata) | 6.83e-08 | 15 |
neurectodermal cell | 7.74e-08 | 59 |
visual pigment cell | 1.89e-07 | 4 |
neuron associated cell | 6.02e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.02e-07 | 17 |
crystallin accumulating cell | 9.01e-07 | 4 |
vertebrate lens cell | 9.01e-07 | 4 |
lens epithelial cell | 9.01e-07 | 4 |