FFCP PHASE1:Hg19::chr11:65554563..65554576,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5017 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8525 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=34bp_to_uc001ofp.2_5end | |||
|cluster_id=chr11:65554563..65554576,+ | |||
|description=CAGE_peak_2_at_OVOL1_5end | |||
|id=chr11:65554563..65554576,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.40e-20!254;CL:0002076!2.49e-19!43;CL:0000223!1.94e-14!59;CL:0002251!4.97e-11!21;CL:0002368!1.01e-08!13;CL:0000039!3.37e-08!7;CL:0000586!3.37e-08!7;CL:0002159!1.10e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.05e-13;42!CL:0000039;4.64e-11;7!CL:0000586;4.64e-11;7!CL:0002251;2.09e-10;20!CL:0002202;4.57e-07;9!CL:0002632;4.57e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.55e-20,253;CL:0002076,3.38e-17,42;CL:0000223,4.80e-14,58;CL:0000039,5.21e-11,7;CL:0000586,5.21e-11,7;CL:0002251,2.17e-10,20;CL:0002202,7.82e-07,9;CL:0002632,7.82e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.16e-07;58 | |||
|ontology_enrichment_disease=DOID:305!3.58e-15!106;DOID:1749!1.19e-11!14;DOID:0050687!9.11e-10!143;DOID:299!1.57e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:299;2.65e-14;25!DOID:1749;6.13e-14;14!DOID:5093;3.65e-08;4!DOID:1612;3.65e-08;4!DOID:305;3.09e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.46e-19,106;DOID:0050687,1.49e-14,143;DOID:299,2.80e-14,25;DOID:1749,4.53e-14,14;DOID:5093,3.67e-08,4;DOID:1612,3.67e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.82e-20!169;UBERON:0000925!1.82e-20!169;UBERON:0006595!1.82e-20!169;UBERON:0001007!3.07e-16!155;UBERON:0001555!3.07e-16!155;UBERON:0007026!3.07e-16!155;UBERON:0004921!5.41e-14!129;UBERON:0004185!5.41e-14!129;UBERON:0000464!4.05e-13!104;UBERON:0001004!3.09e-12!72;UBERON:0000077!1.53e-11!130;UBERON:0000466!7.03e-11!126;UBERON:0000161!7.78e-11!35;UBERON:0000166!3.51e-10!21;UBERON:0000344!1.74e-08!12;UBERON:0005911!1.02e-07!82;UBERON:0000065!2.06e-07!53;UBERON:0001041!2.07e-07!98;UBERON:0002553!2.32e-07!70;UBERON:0000165!2.44e-07!28;UBERON:0000930!2.44e-07!28;UBERON:0001008!3.81e-07!45;UBERON:0005178!4.36e-07!34;UBERON:0002224!4.36e-07!34;UBERON:0005181!9.80e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.82e-18;33!UBERON:0005409;3.17e-13;22!UBERON:0000160;1.24e-11;17!UBERON:0001555;3.38e-11;54!UBERON:0001041;4.98e-08;14!UBERON:0000161;5.94e-08;19!UBERON:0000166;5.94e-08;19!UBERON:0000344;1.24e-07;20!UBERON:0001007;3.32e-07;81!UBERON:0000059;5.52e-07;11!UBERON:0000165;7.08e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.15e-18,160;UBERON:0000925,5.15e-18,160;UBERON:0006595,5.15e-18,160;UBERON:0001007,1.16e-15,145;UBERON:0001555,1.16e-15,145;UBERON:0007026,1.16e-15,145;UBERON:0004921,1.07e-14,118;UBERON:0000160,1.04e-11,17;UBERON:0005409,2.84e-11,25;UBERON:0000161,5.53e-11,36;UBERON:0000166,1.27e-09,22;UBERON:0001008,7.42e-08,48;UBERON:0000344,1.32e-07,20;UBERON:0005156,2.50e-07,59;UBERON:0000990,2.50e-07,59;UBERON:0006554,2.86e-07,47;UBERON:0003133,2.92e-07,48;UBERON:0000059,4.40e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,2.09340350391728,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.164201178899891,0.157421562627358,0,0,0.309632246632152,5.51652734687356,1.204823675113,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,1.89919659471683,7.28590576585084,8.52804218404188,0,0.696518949197069,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51239109112286,1.09098448236334,0.286804595389004,0.487894824518382,0.927708378250397,0.69716365721711,1.7622379352613,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.02643348861256,0,1.53650399572076,2.24803506515239,1.80952150340936,0.555530670951178,0,0,0,0,0,0,0,0,12.6432703673484,12.8772924314231,0,0.468008530278475,0.445893486866185,0.93733833986777,0.16798212819886,0.425325291727159,0.447792613514241,0,1.91691339582606,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,26.6752262872708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.71351853407327,0,1.56537681191024,0,0,0,5.41439535488894,1.46329140498388,1.56869953835371,0,0.422206515571503,0,0,0,0,0,0,2.29388645740534,3.3243040357149,0.895499018888713,0,0,0,0,0,2.26690225624989,0,0,1.14853107599234,4.55042172225565,0,0,0,0,0,0,0,0,0,0.330569830721956,1.34533047155574,0.893288987462089,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44333169088268,2.01090682660736,1.08890984861323,1.7887322147588,1.29151611801369,11.7930032967338,4.87773168890343,0.459446800413919,0,0,0,0,0,0,0,0,0,0,20.5833781424067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70338495076131,0,0,0,0,0,0,0,0,0,0,10.2927297224521,0,0,0,0,21.7257481111298,0.593929361665277,14.7437137007631,0,0,0,0,0,0,1.93398740871803,1.51159648712566,0,0,0,7.09959974063882,0.358042349351218,0,1.479651084554,0,0,0,0,0,10.4171104434093,8.2212399996424,0.724999575434793,2.04828206913899,1.5255219017566,1.41832609060762,0,0,0,0,0,0,0,0,0,0,18.96162922189,2.30850775511391,0,19.3673679685971,10.6811596847629,6.41019494339848,9.8890359516895,2.01514705484097,0.533034776018635,0,0,0,0,0,0,0,0,0,13.221857460891,6.36088821452734,0,8.95735737970654,6.63431733775044,15.8867837682743,0,0,0,0,0,0,0,2.73930466504926,0,1.97292201424695,4.83962864194656,0,0,0.150323419414493,0,0,0,0,0,4.55375273647668,0,2.08271686002157,39.0989665683367,3.65648667637691,0.17472666824203,0,0,0,0,10.0868577147956,0,1.12990370390266,0,0,0,4.10657903743086,2.24444696704294,1.70762395791482,0,4.61089334893139,0,0,0,0,15.5558062847085,0,0,0,0,0,0,0,0,0,0,0,0,6.98876501746469,0,0,0,0,3.49487848582361,0,0,0,0,0,0,0.136203406111576,0.964518890790115,0.137539436597234,0,2.92466059016951,64.9993641828678,0,3.01891218839339,2.83700546277113,5.03564046095982,0,0,5.9493711169028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.45778026780006,0.106787412567695,0,0.828478110694391,0,0,0,1.91502377331055,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.163565394255844,0,0,5.28280308396568,0,0.320075189082423,0,0,0,4.47614424702222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66851121451744,3.30315225373673,1.83428598521679,12.0146692796352,0,0,0,0,0,0,9.95245439029405,0,9.4627895178909,0,0,0,0,0,7.67560873600055,0,0,1.27762427639595,0,0,0,0,5.76565406057152,0,0,0,0,0,3.22571065487001,0.863424021355654,0,49.8884450698544,2.73947616152849,0,0,0.142953088353313,0,0,0,0,0.414432328326074,0.6828739083758,6.91259661814092,3.01159151174194,0,0,2.9637093513365,4.582137370881,0,0,14.4293507019152,1.66855397145913,3.53561982448581,0,0,0,4.85710993059139,0,0.994753875806841,0,0.79062257427272,0,0.905777061400041,6.40545512295941,5.90110813360685,0,0,1.88541237681301,0,0,0,0,0,0.128915775947154,0,1.96409332466223,1.05868461514708,0.561689566824178,2.19100916473955,2.75237570042724,0,0,0,0,4.2322147241232,0,0,0,0,0.109265571963696,0,3.26364255174342,2.13773924212448,2.84874188558019,1.25353769646188,0.303114792872958,0.535928260312357,0,0,3.83821167421766,0.23806443146374,0.387533459016037,0.186224142887574,0,0.891060215894309,0.808468755832877,12.8452881259207,4.10679961302337,7.81283814969215,1.79305513481691,0.99798106963804,6.02384187721211,0,0,0,2.34640942403454,0.122241444182866,3.25516942652591,1.33151354837103,0.201273793591026,0 | |||
|short_description=p2@OVOL1 | |||
}} |
Latest revision as of 10:56, 19 September 2015
Short description: | p2@OVOL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_OVOL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 34bp_to_uc001ofp.2_5end |
EntrezGene: | OVOL1 |
HGNC: | 8525 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.55e-20 | 253 |
endo-epithelial cell | 3.38e-17 | 42 |
endodermal cell | 4.80e-14 | 58 |
germ line cell | 5.21e-11 | 7 |
germ cell | 5.21e-11 | 7 |
epithelial cell of alimentary canal | 2.17e-10 | 20 |
epithelial cell of tracheobronchial tree | 7.82e-07 | 9 |
epithelial cell of lower respiratory tract | 7.82e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.15e-18 | 160 |
endoderm | 5.15e-18 | 160 |
presumptive endoderm | 5.15e-18 | 160 |
digestive system | 1.16e-15 | 145 |
digestive tract | 1.16e-15 | 145 |
primitive gut | 1.16e-15 | 145 |
subdivision of digestive tract | 1.07e-14 | 118 |
intestine | 1.04e-11 | 17 |
gastrointestinal system | 2.84e-11 | 25 |
orifice | 5.53e-11 | 36 |
oral opening | 1.27e-09 | 22 |
renal system | 7.42e-08 | 48 |
mucosa | 1.32e-07 | 20 |
reproductive structure | 2.50e-07 | 59 |
reproductive system | 2.50e-07 | 59 |
urinary system structure | 2.86e-07 | 47 |
reproductive organ | 2.92e-07 | 48 |
large intestine | 4.40e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.46e-19 | 106 |
cell type cancer | 1.49e-14 | 143 |
adenocarcinoma | 2.80e-14 | 25 |
squamous cell carcinoma | 4.53e-14 | 14 |
thoracic cancer | 3.67e-08 | 4 |
breast cancer | 3.67e-08 | 4 |