FFCP PHASE1:Hg19::chr6:106535643..106535655,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=639 | |EntrezGene=639 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |HGNC=9346 | ||
|TSSclassifier=strong | |||
|UniProt=B2REA5 | |UniProt=B2REA5 | ||
|association_with_transcript=188bp_to_ENST00000424894_5end | |association_with_transcript=188bp_to_ENST00000424894_5end | ||
|cluster_id=chr6:106535643..106535655,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_13_at_PRDM1_5end | |description=CAGE_peak_13_at_PRDM1_5end | ||
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|ontology_enrichment_celltype=CL:0002009!7.70e-54!65;CL:0002194!1.13e-50!63;CL:0000576!1.13e-50!63;CL:0000040!1.13e-50!63;CL:0000559!1.13e-50!63;CL:0000557!5.29e-48!71;CL:0000839!3.81e-44!70;CL:0000766!1.33e-43!76;CL:0002057!5.70e-41!42;CL:0000860!1.76e-37!45;CL:0000763!7.54e-35!112;CL:0000049!7.54e-35!112;CL:0000738!5.78e-27!140;CL:0002087!5.16e-26!119;CL:0002031!8.30e-26!124;CL:0000988!2.55e-22!182;CL:0002032!2.94e-22!165;CL:0000837!2.94e-22!165;CL:0000037!1.23e-21!172;CL:0000566!1.23e-21!172;CL:0000990!1.54e-09!8;CL:0000134!8.83e-09!358;CL:0002320!2.86e-08!365;CL:0000840!5.52e-08!5;CL:0001029!5.52e-08!5;CL:0000451!1.47e-07!10;CL:0000219!6.88e-07!390 | |ontology_enrichment_celltype=CL:0002009!7.70e-54!65;CL:0002194!1.13e-50!63;CL:0000576!1.13e-50!63;CL:0000040!1.13e-50!63;CL:0000559!1.13e-50!63;CL:0000557!5.29e-48!71;CL:0000839!3.81e-44!70;CL:0000766!1.33e-43!76;CL:0002057!5.70e-41!42;CL:0000860!1.76e-37!45;CL:0000763!7.54e-35!112;CL:0000049!7.54e-35!112;CL:0000738!5.78e-27!140;CL:0002087!5.16e-26!119;CL:0002031!8.30e-26!124;CL:0000988!2.55e-22!182;CL:0002032!2.94e-22!165;CL:0000837!2.94e-22!165;CL:0000037!1.23e-21!172;CL:0000566!1.23e-21!172;CL:0000990!1.54e-09!8;CL:0000134!8.83e-09!358;CL:0002320!2.86e-08!365;CL:0000840!5.52e-08!5;CL:0001029!5.52e-08!5;CL:0000451!1.47e-07!10;CL:0000219!6.88e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.28e-119;33!CL:0002057;5.28e-119;33!CL:0000473;1.57e-90;39!CL:0000234;1.57e-90;39!CL:0000576;2.76e-53;48!CL:0000766;3.87e-33;69!CL:0000763;1.48e-17;100!CL:0002087;2.01e-13;104!CL:0000738;3.02e-11;136!CL:0000346;1.13e-08;3!CL:1000428;1.13e-08;3!CL:0000219;3.67e-07;193 | |ontology_enrichment_celltype_v019=CL:0000860;5.28e-119;33!CL:0002057;5.28e-119;33!CL:0000473;1.57e-90;39!CL:0000234;1.57e-90;39!CL:0000576;2.76e-53;48!CL:0000766;3.87e-33;69!CL:0000763;1.48e-17;100!CL:0002087;2.01e-13;104!CL:0000738;3.02e-11;136!CL:0000346;1.13e-08;3!CL:1000428;1.13e-08;3!CL:0000219;3.67e-07;193 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.95e-102,48;CL:0000234,3.95e-102,48;CL:0000860,1.39e-101,42;CL:0002057,1.39e-101,42;CL:0002009,2.54e-89,61;CL:0002194,2.06e-86,59;CL:0000576,2.06e-86,59;CL:0000040,2.06e-86,59;CL:0000559,2.06e-86,59;CL:0000557,5.57e-81,67;CL:0000839,7.65e-77,66;CL:0000766,4.25e-70,72;CL:0000763,1.58e-48,108;CL:0000049,1.58e-48,108;CL:0002031,3.50e-43,120;CL:0002087,3.75e-42,115;CL:0000738,1.65e-37,136;CL:0002032,7.02e-31,161;CL:0000837,7.02e-31,161;CL:0000037,2.25e-29,168;CL:0000988,1.30e-27,177;CL:0000134,3.64e-13,354;CL:0002320,8.48e-13,361;CL:0000219,1.66e-11,386;CL:0000048,6.38e-10,427;CL:0000723,1.06e-09,433;CL:0000034,2.02e-09,441;CL:0000346,9.28e-09,3;CL:1000428,9.28e-09,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-72;42!CL:0000049;3.60e-16;108 | |ontology_enrichment_development_v019=CL:0002057;1.15e-72;42!CL:0000049;3.60e-16;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.88e-41!80;UBERON:0002390!8.09e-38!102;UBERON:0003061!8.09e-38!102;UBERON:0001474!5.61e-37!86;UBERON:0002193!5.91e-33!112;UBERON:0004765!4.38e-32!101;UBERON:0001434!4.38e-32!101;UBERON:0002405!2.78e-26!115;UBERON:0002204!1.11e-18!167;UBERON:0003081!1.22e-13!216;UBERON:0002384!4.86e-08!375 | |ontology_enrichment_uberon=UBERON:0002371!6.88e-41!80;UBERON:0002390!8.09e-38!102;UBERON:0003061!8.09e-38!102;UBERON:0001474!5.61e-37!86;UBERON:0002193!5.91e-33!112;UBERON:0004765!4.38e-32!101;UBERON:0001434!4.38e-32!101;UBERON:0002405!2.78e-26!115;UBERON:0002204!1.11e-18!167;UBERON:0003081!1.22e-13!216;UBERON:0002384!4.86e-08!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.13e-08;3!UBERON:0001992;1.13e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0000412;1.13e-08;3!UBERON:0001992;1.13e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.67e-71,76;UBERON:0001474,2.14e-65,82;UBERON:0004765,3.51e-59,90;UBERON:0002405,4.01e-57,93;UBERON:0002390,5.72e-54,98;UBERON:0003061,5.72e-54,98;UBERON:0001434,8.54e-53,100;UBERON:0002193,1.58e-48,108;UBERON:0002204,1.40e-29,167;UBERON:0003081,2.18e-23,203;UBERON:0000926,1.68e-15,315;UBERON:0004120,1.68e-15,315;UBERON:0006603,1.68e-15,315;UBERON:0002384,2.68e-12,371;UBERON:0000412,9.28e-09,3;UBERON:0001992,9.28e-09,3 | |||
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| ||
|short_description=p13@PRDM1 | |short_description=p13@PRDM1 | ||
}} | }} |
Latest revision as of 14:58, 19 September 2015
Short description: | p13@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_PRDM1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 188bp_to_ENST00000424894_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | B2REA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.95e-102 | 48 |
phagocyte | 3.95e-102 | 48 |
classical monocyte | 1.39e-101 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.39e-101 | 42 |
macrophage dendritic cell progenitor | 2.54e-89 | 61 |
monopoietic cell | 2.06e-86 | 59 |
monocyte | 2.06e-86 | 59 |
monoblast | 2.06e-86 | 59 |
promonocyte | 2.06e-86 | 59 |
granulocyte monocyte progenitor cell | 5.57e-81 | 67 |
myeloid lineage restricted progenitor cell | 7.65e-77 | 66 |
myeloid leukocyte | 4.25e-70 | 72 |
myeloid cell | 1.58e-48 | 108 |
common myeloid progenitor | 1.58e-48 | 108 |
hematopoietic lineage restricted progenitor cell | 3.50e-43 | 120 |
nongranular leukocyte | 3.75e-42 | 115 |
leukocyte | 1.65e-37 | 136 |
hematopoietic oligopotent progenitor cell | 7.02e-31 | 161 |
hematopoietic multipotent progenitor cell | 7.02e-31 | 161 |
hematopoietic stem cell | 2.25e-29 | 168 |
hematopoietic cell | 1.30e-27 | 177 |
mesenchymal cell | 3.64e-13 | 354 |
connective tissue cell | 8.48e-13 | 361 |
motile cell | 1.66e-11 | 386 |
multi fate stem cell | 6.38e-10 | 427 |
somatic stem cell | 1.06e-09 | 433 |
stem cell | 2.02e-09 | 441 |
hair follicle dermal papilla cell | 9.28e-09 | 3 |
stem cell of epidermis | 9.28e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.67e-71 | 76 |
bone element | 2.14e-65 | 82 |
skeletal element | 3.51e-59 | 90 |
immune system | 4.01e-57 | 93 |
hematopoietic system | 5.72e-54 | 98 |
blood island | 5.72e-54 | 98 |
skeletal system | 8.54e-53 | 100 |
hemolymphoid system | 1.58e-48 | 108 |
musculoskeletal system | 1.40e-29 | 167 |
lateral plate mesoderm | 2.18e-23 | 203 |
mesoderm | 1.68e-15 | 315 |
mesoderm-derived structure | 1.68e-15 | 315 |
presumptive mesoderm | 1.68e-15 | 315 |
connective tissue | 2.68e-12 | 371 |
dermal papilla | 9.28e-09 | 3 |
papillary layer of dermis | 9.28e-09 | 3 |