FFCP PHASE1:Hg19::chr1:201368430..201368460,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3898 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6472 | |||
|TSSclassifier=strong | |||
|UniProt=O00515 | |||
|association_with_transcript=208bp_to_NM_005558,uc001gwm.2,uc009wzu.1_5end | |||
|cluster_id=chr1:201368430..201368460,- | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_1_at_LAD1_5end | |||
|id=chr1:201368430..201368460,- | |||
|ontology_enrichment_celltype=CL:0000066!3.02e-32!254;CL:0000223!6.68e-25!59;CL:0002076!2.73e-22!43;CL:0002251!1.61e-11!21;CL:0002368!3.36e-11!13;CL:0002159!5.24e-09!13;CL:0002202!9.85e-08!9;CL:0002632!9.85e-08!9;CL:1000449!2.59e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.25e-19;42!CL:0002251;1.01e-12;20!CL:0002368;1.41e-12;13!CL:1000507;3.58e-09;10!CL:1000494;3.58e-09;10!CL:1000449;5.02e-09;15!CL:0002202;1.21e-08;9!CL:0002632;1.21e-08;9!CL:0002159;5.42e-08;14!CL:1000497;1.51e-07;17!CL:0002518;1.51e-07;17!CL:0002681;3.66e-07;12!CL:0002584;3.66e-07;12!CL:0000453;6.56e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.51e-35,253;CL:0000223,2.33e-27,58;CL:0002076,2.86e-25,42;CL:0002251,9.10e-13,20;CL:0002368,1.40e-12,13;CL:1000507,3.38e-09,10;CL:1000494,3.38e-09,10;CL:1000449,4.52e-09,15;CL:0002202,1.19e-08,9;CL:0002632,1.19e-08,9;CL:0002159,5.36e-08,14;CL:1000497,1.38e-07,17;CL:0002518,1.38e-07,17;CL:0002681,3.36e-07,12;CL:0002584,3.36e-07,12;CL:0000453,6.64e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;2.13e-14;58!UBERON:0006595;1.27e-07;86!UBERON:0001041;4.20e-07;30!UBERON:0009497;7.68e-07;13 | |||
|ontology_enrichment_disease=DOID:305!1.81e-14!106;DOID:1749!9.49e-12!14;DOID:0050687!3.74e-09!143;DOID:299!1.43e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.97e-13;14!DOID:299;7.00e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.47e-15,106;DOID:1749,4.12e-13,14;DOID:0050687,5.58e-10,143;DOID:299,6.84e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.12e-29!169;UBERON:0000925!2.12e-29!169;UBERON:0006595!2.12e-29!169;UBERON:0001007!1.85e-22!155;UBERON:0001555!1.85e-22!155;UBERON:0007026!1.85e-22!155;UBERON:0004921!1.10e-20!129;UBERON:0004185!1.10e-20!129;UBERON:0000466!1.18e-19!126;UBERON:0000077!3.72e-19!130;UBERON:0000464!2.09e-15!104;UBERON:0005911!4.23e-15!82;UBERON:0005177!1.75e-14!107;UBERON:0001041!1.74e-13!98;UBERON:0001004!2.28e-11!72;UBERON:0009569!2.62e-11!113;UBERON:0001008!4.43e-11!45;UBERON:0006554!1.20e-10!44;UBERON:0000161!2.67e-10!35;UBERON:0002365!7.90e-10!31;UBERON:0002330!7.90e-10!31;UBERON:0000058!9.97e-10!26;UBERON:0003064!1.43e-09!37;UBERON:0000062!2.38e-09!511;UBERON:0002553!3.07e-09!70;UBERON:0005172!4.21e-09!55;UBERON:0005173!4.21e-09!55;UBERON:0002530!5.24e-09!59;UBERON:0003104!8.42e-09!238;UBERON:0009142!8.42e-09!238;UBERON:0000080!1.95e-08!18;UBERON:0002120!1.95e-08!18;UBERON:0004875!1.95e-08!18;UBERON:0005721!1.95e-08!18;UBERON:0005754!1.95e-08!18;UBERON:0007297!1.95e-08!18;UBERON:0003929!2.18e-08!54;UBERON:0005153!2.75e-08!37;UBERON:0003887!2.88e-08!21;UBERON:0004876!2.96e-08!20;UBERON:0000166!3.24e-08!21;UBERON:0006555!9.03e-08!17;UBERON:0005103!9.03e-08!17;UBERON:0000083!9.03e-08!17;UBERON:0009201!9.03e-08!17;UBERON:0004819!9.03e-08!17;UBERON:0006553!9.03e-08!17;UBERON:0003074!9.03e-08!17;UBERON:0003060!9.03e-08!17;UBERON:0004211!2.59e-07!16;UBERON:0001285!2.59e-07!16;UBERON:0007684!2.59e-07!16;UBERON:0003220!2.59e-07!16;UBERON:0004208!2.59e-07!16;UBERON:0000468!2.70e-07!659;UBERON:0000344!2.79e-07!12;UBERON:0000065!2.79e-07!53;UBERON:0002417!2.81e-07!61;UBERON:0000916!2.81e-07!61;UBERON:0005178!3.01e-07!34;UBERON:0002224!3.01e-07!34;UBERON:0005156!3.48e-07!59;UBERON:0000990!3.48e-07!59;UBERON:0005409!6.70e-07!35;UBERON:0005181!7.29e-07!35;UBERON:0000922!9.23e-07!612;UBERON:0003886!9.55e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;7.55e-12;33!UBERON:0002365;3.16e-11;31!UBERON:0002330;3.16e-11;31!UBERON:0006554;7.21e-11;30!UBERON:0001008;7.21e-11;30!UBERON:0004211;3.58e-09;10!UBERON:0009773;3.58e-09;10!UBERON:0001231;3.58e-09;10!UBERON:0004810;3.58e-09;10!UBERON:0006555;5.02e-09;15!UBERON:0004819;5.02e-09;15!UBERON:0001285;5.02e-09;15!UBERON:0007684;5.02e-09;15!UBERON:0001555;1.08e-08;54!UBERON:0001007;1.67e-08;81!UBERON:0005409;4.73e-08;22!UBERON:0000161;6.69e-08;19!UBERON:0000166;6.69e-08;19!UBERON:0005911;7.59e-08;36!UBERON:0002423;9.59e-08;25!UBERON:0005178;9.99e-08;34!UBERON:0002224;9.99e-08;34!UBERON:0000344;2.14e-07;20!UBERON:0001225;3.66e-07;12!UBERON:0008987;3.66e-07;12!UBERON:0000365;3.96e-07;5!UBERON:0000165;4.63e-07;28!UBERON:0004807;4.77e-07;22!UBERON:0005181;4.79e-07;35!UBERON:0004119;4.87e-07;158!UBERON:0000160;6.38e-07;17!UBERON:0001041;6.50e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.75e-31,160;UBERON:0000925,1.75e-31,160;UBERON:0006595,1.75e-31,160;UBERON:0001007,5.84e-24,145;UBERON:0001555,5.84e-24,145;UBERON:0007026,5.84e-24,145;UBERON:0004921,3.04e-23,118;UBERON:0005177,9.33e-17,101;UBERON:0005911,3.77e-16,82;UBERON:0001041,2.99e-15,87;UBERON:0001008,3.81e-15,48;UBERON:0006554,1.24e-14,47;UBERON:0001004,3.39e-13,74;UBERON:0009569,1.75e-12,112;UBERON:0002365,2.22e-11,31;UBERON:0002330,2.22e-11,31;UBERON:0000161,1.22e-10,36;UBERON:0006555,1.36e-09,16;UBERON:0004819,1.36e-09,16;UBERON:0005172,2.14e-09,54;UBERON:0005173,2.14e-09,54;UBERON:0004810,3.38e-09,10;UBERON:0004211,4.52e-09,15;UBERON:0009773,4.52e-09,15;UBERON:0001231,4.52e-09,15;UBERON:0001285,4.52e-09,15;UBERON:0007684,4.52e-09,15;UBERON:0004208,4.52e-09,15;UBERON:0005153,4.68e-09,37;UBERON:0000166,9.06e-09,22;UBERON:0000065,1.29e-08,54;UBERON:0005178,1.35e-08,34;UBERON:0002224,1.35e-08,34;UBERON:0003929,2.54e-08,54;UBERON:0005181,3.54e-08,35;UBERON:0002530,6.58e-08,59;UBERON:0009497,1.01e-07,25;UBERON:0000015,1.01e-07,25;UBERON:0002423,1.01e-07,25;UBERON:0006235,1.01e-07,25;UBERON:0004161,1.01e-07,25;UBERON:0002417,1.27e-07,60;UBERON:0000916,1.27e-07,60;UBERON:0005157,1.29e-07,47;UBERON:0000344,2.12e-07,20;UBERON:0002113,2.22e-07,26;UBERON:0003918,2.22e-07,26;UBERON:0011143,2.22e-07,26;UBERON:0005095,2.22e-07,26;UBERON:0007687,2.22e-07,26;UBERON:0009856,2.42e-07,26;UBERON:0005631,2.75e-07,14;UBERON:0000158,2.75e-07,14;UBERON:0000489,3.21e-07,31;UBERON:0001225,3.36e-07,12;UBERON:0008987,3.36e-07,12;UBERON:0005156,3.38e-07,59;UBERON:0000990,3.38e-07,59;UBERON:0000365,3.92e-07,5;UBERON:0000160,6.40e-07,17;UBERON:0004175,7.48e-07,25;UBERON:0000922,7.99e-07,592;UBERON:0007499,9.18e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,17.9385773646101,113.741590379506,11.358951350769,17.4086205630779,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,94.7003861213295,128.614927318313,83.9341603078608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,3.53643503843824,111.110062929225,81.9433618553589,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,97.2489736277851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99330275081114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,76.3380369995023,59.458654288802,53.3456547423547,3.41526377162867,2.51806559810822,2.90484857173796,3.31715376049185,6.81266297364197,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.173610169971,0,11.4079531339648,8.84544495009863,1.18157981336281,0,25.7045836555107,0,112.823293400067,66.3170344219955,67.0528245985578,77.4965285976893,0,0,0,0,0,0,0.462985512576611,0.190254152234598,9.4824527755113,6.86788929675898,0,0,0,47.8042553332563,36.4521218191525,36.8615252830205,50.152772713595,58.1267877027924,90.8616949621551,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.063497894292169,0,0,5.13217338068116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,14.2469958579742,9.98612637062982,10.5836602665388,0,0,0,0,0,0,0,0,0,0,0,0,24.1718899183244,37.6952164170176,51.1970298483584,0,0,0,27.0719767744447,13.9397760158991,20.3930939985982,8.76835347919564,3.9054102690364,0,0,1.94324324491925,1.54227252690289,9.7540717515787,29.5996966574364,25.9973798505939,41.5538004464362,16.5667318494412,0,0,0,0,0,4.32772248920434,0,0,86.714096237422,65.6560848496886,0,0,0,0,0,0,0,0,0,43.4699327399372,54.0054089295948,28.7128603112814,47.2406836595418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,53.7881610135612,101.88594588144,84.9349681918316,4.70719003883896,101.168762577739,112.875888697309,131.255325446856,67.3089562606391,0,0,0,0,0,0,0,0,0,0,19.6032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.8138918693974,0,0,0,0,19.3383032637529,1.18785872333055,25.4943382742363,0,0,0,0,6.3337622438398,1.19548792950642,13.8141957765574,12.0927718970052,0,0,0,30.4653710389438,18.797223340939,0,7.69418563968082,0,0,0,0,0,7.812832832557,1.04951999995435,0.724999575434793,35.2759689685049,17.0349945696153,13.2377101790044,0,0,0,0,0,0,0,0,0,0,39.7357671194019,7.31027455786072,0,9.68368398429853,4.21860928725929,7.93125815030659,4.14701507651495,3.29751336246704,3.19820865611181,0,0,0,0,0,0,0,0,0,15.3438839669599,17.5277808578087,0,27.8673340701981,25.2104058834517,32.9956278264158,0,0,0,0.134802265961354,0,0,0,9.97889556553658,0,12.2321164883311,25.4080503702194,0,0,0,0,0,0,0,0,4.83836228250648,0,2.2562765983567,57.2275600899965,29.1648342044349,4.89234671077684,0,0,0,0,33.9461557709468,0,0.90392296312213,0,0,0.0633107959558787,9.58201775400535,1.76349404553374,100.109454532756,0.599428828746391,78.6733677661419,0,0,0,0,12.2560898000734,0,0,0,0,0,0,0,0,0,0,0,0,1.59743200399193,0.429226048136571,0,0,0,24.4641494007653,34.0343347567206,32.4718482021796,33.7017719270924,7.57891607663566,0,0,0,2.57205037544031,2.20063098555574,0.83088067605837,83.2403398740552,15.476039091159,0,161.008650047648,22.4596265802715,15.5790126760944,0,0,12.0906574311251,0,0,0,0,0,0,0,0.082092520749339,0,0,6.59485051551371,5.30027555648885,0,0,0,4.9337051562167,2.56289790162467,2.98688179689365,2.07119527673598,0.992332043623902,0,0,42.7688642706022,0,0,0,0,7.22448842751078,0,0,0,0,0,0,0,0,3.94287705608284,0,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,36.1300541209005,0,0,0,99.5736178169275,88.0893891277597,77.2028660887585,0,0,45.4321065221048,0,0,0,0,0,39.1662621614445,59.7194169631654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.6721229737369,14.5102759717721,69.702867438238,22.874081897767,0,0,0,1.20336525358812,0,32.8235884717899,0.785720083444267,0,34.3026120023545,0.0675375846183947,0,0,0,0,9.86863980342928,7.44316767583941,0,5.87707167142138,0,0,0.606965604236632,0,7.09618961301111,0,0,0,0,0.236387681767936,11.9017600024514,5.41602340668547,0,16.2557854721998,33.7868726588513,0,0,0.0714765441766563,0,0,0,0,3.72989095493466,2.7314956335032,18.6640108689805,5.59295566466361,0,0,19.8991913589737,13.9755189811871,0,0,24.9437612909077,11.7780280338292,99.9726984854609,0,0,0,20.3998617084839,1.16969731731053,5.37167092935694,0,7.45444141457136,0,9.81258483183378,61.9708489606796,41.3077569352479,16.9314226690148,1.96118657403124,2.35676547101626,0,0,0.4226557275834,0,0.0939839179798536,0.45120521581504,0,11.2488981321564,17.644743585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| |||
|short_description=p1@LAD1 | |||
}} |
Latest revision as of 17:44, 19 September 2015
Short description: | p1@LAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAD1_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 208bp_to_NM_005558, uc001gwm.2, uc009wzu.1_5end |
EntrezGene: | LAD1 |
HGNC: | 6472 |
UniProt: | O00515 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.51e-35 | 253 |
endodermal cell | 2.33e-27 | 58 |
endo-epithelial cell | 2.86e-25 | 42 |
epithelial cell of alimentary canal | 9.10e-13 | 20 |
respiratory epithelial cell | 1.40e-12 | 13 |
kidney tubule cell | 3.38e-09 | 10 |
nephron tubule epithelial cell | 3.38e-09 | 10 |
epithelial cell of nephron | 4.52e-09 | 15 |
epithelial cell of tracheobronchial tree | 1.19e-08 | 9 |
epithelial cell of lower respiratory tract | 1.19e-08 | 9 |
general ecto-epithelial cell | 5.36e-08 | 14 |
kidney cell | 1.38e-07 | 17 |
kidney epithelial cell | 1.38e-07 | 17 |
kidney cortical cell | 3.36e-07 | 12 |
renal cortical epithelial cell | 3.36e-07 | 12 |
Langerhans cell | 6.64e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.47e-15 | 106 |
squamous cell carcinoma | 4.12e-13 | 14 |
cell type cancer | 5.58e-10 | 143 |
adenocarcinoma | 6.84e-08 | 25 |