FFCP PHASE1:Hg19::chr12:6484605..6484629,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000538979_5end | |association_with_transcript=-5bp_to_ENST00000538979_5end | ||
|cluster_id=chr12:6484605..6484629,- | |||
|coexpression_cluster_id=C3317 | |coexpression_cluster_id=C3317 | ||
|description=CAGE_peak_1_at_SCNN1A_5end | |description=CAGE_peak_1_at_SCNN1A_5end | ||
|id=chr12:6484605..6484629,- | |id=chr12:6484605..6484629,- | ||
|ontology_enrichment_celltype=CL:0000066!2.72e-32!254;CL:0002076!3.77e-19!43;CL:0000223!5.69e-19!59;CL:0002251!2.73e-09!21;CL:0002368!1.11e-08!13 | |ontology_enrichment_celltype=CL:0000066!2.72e-32!254;CL:0002076!3.77e-19!43;CL:0000223!5.69e-19!59;CL:0002251!2.73e-09!21;CL:0002368!1.11e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.95e-14;42!CL:0002368;9.92e-10;13!CL:1000507;2.93e-09;10!CL:1000494;2.93e-09;10!CL:1000449;5.32e-08;15!CL:0002251;8.75e-08;20!CL:0002202;7.01e-07;9!CL:0002632;7.01e-07;9!CL:0002322;9.32e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.82e-23,253;CL:0002076,1.20e-18,42;CL:0000223,1.81e-17,58;CL:0002368,1.03e-09,13;CL:1000507,2.80e-09,10;CL:1000494,2.80e-09,10;CL:1000449,5.04e-08,15;CL:0002251,9.32e-08,20;CL:0002202,7.18e-07,9;CL:0002632,7.18e-07,9;CL:0002322,9.11e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.65e-09;58!UBERON:0006595;3.68e-07;86!UBERON:0009117;6.16e-07;10!UBERON:0005564;6.16e-07;10 | |||
|ontology_enrichment_disease=DOID:305!1.11e-22!106;DOID:0050687!6.35e-15!143;DOID:299!1.46e-09!25 | |ontology_enrichment_disease=DOID:305!1.11e-22!106;DOID:0050687!6.35e-15!143;DOID:299!1.46e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.34e-07;14!DOID:299;3.18e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.24e-14,106;DOID:0050687,8.86e-09,143;DOID:1749,2.49e-07,14;DOID:299,2.94e-07,25 | |||
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|ontology_enrichment_uberon_v019=UBERON:0004921;3.26e-12;33!UBERON:0006554;1.66e-11;30!UBERON:0001008;1.66e-11;30!UBERON:0005178;1.98e-09;34!UBERON:0002224;1.98e-09;34!UBERON:0004211;2.93e-09;10!UBERON:0009773;2.93e-09;10!UBERON:0001231;2.93e-09;10!UBERON:0004810;2.93e-09;10!UBERON:0005181;2.03e-08;35!UBERON:0003135;2.32e-08;11!UBERON:0005409;4.74e-08;22!UBERON:0006555;5.32e-08;15!UBERON:0004819;5.32e-08;15!UBERON:0001285;5.32e-08;15!UBERON:0007684;5.32e-08;15!UBERON:0002113;7.00e-08;24!UBERON:0011143;7.00e-08;24!UBERON:0002048;7.38e-08;22!UBERON:0000117;7.38e-08;22!UBERON:0000171;7.38e-08;22!UBERON:0000170;7.38e-08;22!UBERON:0003101;8.22e-08;22!UBERON:0000079;8.22e-08;22!UBERON:0000489;1.18e-07;29!UBERON:0001041;2.73e-07;14!UBERON:0001555;3.01e-07;54 | |||
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| ||
|short_description=p1@SCNN1A | |short_description=p1@SCNN1A | ||
}} | }} |
Latest revision as of 20:51, 19 September 2015
Short description: | p1@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCNN1A_5end |
Coexpression cluster: | C3317_smallcell_lung_merkel_small_kidney_bronchioalveolar_Renal |
Association with transcript: | -5bp_to_ENST00000538979_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.82e-23 | 253 |
endo-epithelial cell | 1.20e-18 | 42 |
endodermal cell | 1.81e-17 | 58 |
respiratory epithelial cell | 1.03e-09 | 13 |
kidney tubule cell | 2.80e-09 | 10 |
nephron tubule epithelial cell | 2.80e-09 | 10 |
epithelial cell of nephron | 5.04e-08 | 15 |
epithelial cell of alimentary canal | 9.32e-08 | 20 |
epithelial cell of tracheobronchial tree | 7.18e-07 | 9 |
epithelial cell of lower respiratory tract | 7.18e-07 | 9 |
embryonic stem cell | 9.11e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.24e-14 | 106 |
cell type cancer | 8.86e-09 | 143 |
squamous cell carcinoma | 2.49e-07 | 14 |
adenocarcinoma | 2.94e-07 | 25 |