FFCP PHASE1:Hg19::chr3:119813284..119813301,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:119813284..119813301,- to FFCP PHASE1:Hg19::chr3:119813284..119813301,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2932 | |EntrezGene=2932 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4617 | |HGNC=4617 | ||
|TSSclassifier=strong | |||
|UniProt=P49841,Q6FI27 | |UniProt=P49841,Q6FI27 | ||
|association_with_transcript=-20bp_to_ENST00000264235,NM_001146156,NM_002093,uc003edn.2,uc003edo.2_5end | |||
|cluster_id=chr3:119813284..119813301,- | |||
|description=CAGE_peak_1_at_GSK3B_5end | |||
|id=chr3:119813284..119813301,- | |||
|ontology_enrichment_celltype=CL:0000766!8.20e-09!76;CL:0002057!1.53e-08!42;CL:0002009!7.07e-08!65;CL:0002194!1.48e-07!63;CL:0000576!1.48e-07!63;CL:0000040!1.48e-07!63;CL:0000559!1.48e-07!63;CL:0000557!2.83e-07!71;CL:0000860!4.00e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.06e-08;33!CL:0002057;1.06e-08;33!CL:0000473;3.42e-08;39!CL:0000234;3.42e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.69e-10,72;CL:0002009,2.14e-09,61;CL:0000473,3.44e-09,48;CL:0000234,3.44e-09,48;CL:0002194,4.62e-09,59;CL:0000576,4.62e-09,59;CL:0000040,4.62e-09,59;CL:0000559,4.62e-09,59;CL:0000557,1.26e-08,67;CL:0000860,1.53e-08,42;CL:0002057,1.53e-08,42;CL:0000839,3.45e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.29e-10!57;UBERON:0005068!2.29e-10!57;UBERON:0006241!2.29e-10!57;UBERON:0007135!2.29e-10!57;UBERON:0001017!6.12e-10!82;UBERON:0002616!6.40e-10!59;UBERON:0005743!8.26e-10!86;UBERON:0000955!1.15e-09!69;UBERON:0006238!1.15e-09!69;UBERON:0004121!2.87e-09!169;UBERON:0000153!3.20e-09!129;UBERON:0007811!3.20e-09!129;UBERON:0002780!3.65e-09!41;UBERON:0001890!3.65e-09!41;UBERON:0006240!3.65e-09!41;UBERON:0000033!4.09e-09!123;UBERON:0003080!8.70e-09!42;UBERON:0000073!1.35e-08!94;UBERON:0001016!1.35e-08!94;UBERON:0000062!1.51e-08!511;UBERON:0007023!3.41e-08!115;UBERON:0000924!3.94e-08!173;UBERON:0006601!3.94e-08!173;UBERON:0002020!4.97e-08!34;UBERON:0003528!4.97e-08!34;UBERON:0001893!9.74e-08!34;UBERON:0001869!1.36e-07!32;UBERON:0002791!2.11e-07!33;UBERON:0000956!4.90e-07!25;UBERON:0000203!4.90e-07!25;UBERON:0002619!8.67e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.39e-07;34!UBERON:0002020;3.39e-07;34!UBERON:0001893;3.55e-07;34!UBERON:0000956;5.11e-07;25!UBERON:0000203;5.11e-07;25!UBERON:0001869;7.53e-07;32!UBERON:0000073;8.96e-07;53!UBERON:0002616;8.96e-07;53!UBERON:0002619;9.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.03e-10,56;UBERON:0005068,1.03e-10,56;UBERON:0006241,1.03e-10,56;UBERON:0007135,1.03e-10,56;UBERON:0000073,2.00e-10,53;UBERON:0002616,2.00e-10,53;UBERON:0001017,3.39e-10,81;UBERON:0000955,6.02e-10,68;UBERON:0006238,6.02e-10,68;UBERON:0002780,3.65e-09,41;UBERON:0001890,3.65e-09,41;UBERON:0003080,3.65e-09,41;UBERON:0006240,3.65e-09,41;UBERON:0001016,6.93e-09,89;UBERON:0004121,8.29e-09,171;UBERON:0000924,8.29e-09,171;UBERON:0006601,8.29e-09,171;UBERON:0010371,2.62e-08,104;UBERON:0003528,4.97e-08,34;UBERON:0002020,4.97e-08,34;UBERON:0007023,6.30e-08,114;UBERON:0001893,9.74e-08,34;UBERON:0001869,1.36e-07,32;UBERON:0002390,1.45e-07,98;UBERON:0003061,1.45e-07,98;UBERON:0002791,2.91e-07,32;UBERON:0000956,4.90e-07,25;UBERON:0000203,4.90e-07,25;UBERON:0002619,8.67e-07,22;UBERON:0003075,9.92e-07,82;UBERON:0007284,9.92e-07,82 | |||
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| ||
|short_description=p1@GSK3B | |||
}} | }} |
Latest revision as of 21:25, 19 September 2015
Short description: | p1@GSK3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GSK3B_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000264235, NM_001146156, NM_002093, uc003edn.2, uc003edo.2_5end |
EntrezGene: | GSK3B |
HGNC: | 4617 |
UniProt: | P49841Q6FI27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.69e-10 | 72 |
macrophage dendritic cell progenitor | 2.14e-09 | 61 |
defensive cell | 3.44e-09 | 48 |
phagocyte | 3.44e-09 | 48 |
monopoietic cell | 4.62e-09 | 59 |
monocyte | 4.62e-09 | 59 |
monoblast | 4.62e-09 | 59 |
promonocyte | 4.62e-09 | 59 |
granulocyte monocyte progenitor cell | 1.26e-08 | 67 |
classical monocyte | 1.53e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-08 | 42 |
myeloid lineage restricted progenitor cell | 3.45e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.03e-10 | 56 |
neural rod | 1.03e-10 | 56 |
future spinal cord | 1.03e-10 | 56 |
neural keel | 1.03e-10 | 56 |
regional part of nervous system | 2.00e-10 | 53 |
regional part of brain | 2.00e-10 | 53 |
central nervous system | 3.39e-10 | 81 |
brain | 6.02e-10 | 68 |
future brain | 6.02e-10 | 68 |
regional part of forebrain | 3.65e-09 | 41 |
forebrain | 3.65e-09 | 41 |
anterior neural tube | 3.65e-09 | 41 |
future forebrain | 3.65e-09 | 41 |
nervous system | 6.93e-09 | 89 |
ectoderm-derived structure | 8.29e-09 | 171 |
ectoderm | 8.29e-09 | 171 |
presumptive ectoderm | 8.29e-09 | 171 |
ecto-epithelium | 2.62e-08 | 104 |
brain grey matter | 4.97e-08 | 34 |
gray matter | 4.97e-08 | 34 |
adult organism | 6.30e-08 | 114 |
telencephalon | 9.74e-08 | 34 |
cerebral hemisphere | 1.36e-07 | 32 |
hematopoietic system | 1.45e-07 | 98 |
blood island | 1.45e-07 | 98 |
regional part of telencephalon | 2.91e-07 | 32 |
cerebral cortex | 4.90e-07 | 25 |
pallium | 4.90e-07 | 25 |
regional part of cerebral cortex | 8.67e-07 | 22 |
neural plate | 9.92e-07 | 82 |
presumptive neural plate | 9.92e-07 | 82 |