FFCP PHASE1:Hg19::chr5:130599701..130599716,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:130599701..130599716,+
|short_description=p2@CDC42SE2
|description=CAGE_peak_2_at_CDC42SE2_5end
|association_with_transcript=0bp_to_ENST00000395246,NM_0010...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56990 | |EntrezGene=56990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18547 | |HGNC=18547 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NRR3 | |UniProt=Q9NRR3 | ||
|association_with_transcript=0bp_to_ENST00000395246,NM_001038702,NM_020240,uc003kvh.2,uc003kvi.2,uc003kvj.2,uc003kvk.2_5end | |||
|cluster_id=chr5:130599701..130599716,+ | |||
|coexpression_cluster_id=C4459 | |||
|description=CAGE_peak_2_at_CDC42SE2_5end | |||
|id=chr5:130599701..130599716,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.16e-30!172;CL:0000566!1.16e-30!172;CL:0000738!8.10e-30!140;CL:0002032!2.21e-29!165;CL:0000837!2.21e-29!165;CL:0000988!3.08e-27!182;CL:0002031!4.77e-23!124;CL:0002087!9.49e-23!119;CL:0000763!1.69e-15!112;CL:0000049!1.69e-15!112;CL:0000542!1.06e-13!53;CL:0000051!1.06e-13!53;CL:0000838!1.55e-13!52;CL:0000766!1.92e-13!76;CL:0000557!8.69e-11!71;CL:0002057!5.25e-10!42;CL:0000839!9.07e-10!70;CL:0002009!2.37e-09!65;CL:0002194!7.41e-09!63;CL:0000576!7.41e-09!63;CL:0000040!7.41e-09!63;CL:0000559!7.41e-09!63;CL:0000791!1.95e-08!18;CL:0000789!1.95e-08!18;CL:0002420!1.95e-08!18;CL:0002419!1.95e-08!18;CL:0000790!1.95e-08!18;CL:0000860!4.16e-08!45;CL:0000084!2.23e-07!25;CL:0000827!2.23e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.86e-09;33!CL:0002057;2.86e-09;33!CL:0000791;1.68e-08;18!CL:0000789;1.68e-08;18!CL:0002419;1.68e-08;18!CL:0002087;2.25e-08;104!CL:0000473;3.07e-08;39!CL:0000234;3.07e-08;39!CL:0000542;7.89e-08;53!CL:0000084;1.36e-07;25!CL:0000738;1.97e-07;136!CL:0000576;2.33e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.31e-34,168;CL:0000738,1.28e-33,136;CL:0002032,4.42e-33,161;CL:0000837,4.42e-33,161;CL:0000988,7.35e-31,177;CL:0002031,1.62e-26,120;CL:0002087,3.01e-26,115;CL:0000763,3.25e-18,108;CL:0000049,3.25e-18,108;CL:0000766,1.98e-16,72;CL:0000542,3.30e-14,53;CL:0000051,3.30e-14,53;CL:0000838,4.91e-14,52;CL:0000557,2.13e-13,67;CL:0000839,3.33e-12,66;CL:0002009,8.36e-12,61;CL:0002194,3.00e-11,59;CL:0000576,3.00e-11,59;CL:0000040,3.00e-11,59;CL:0000559,3.00e-11,59;CL:0000473,3.00e-10,48;CL:0000234,3.00e-10,48;CL:0000860,3.37e-10,42;CL:0002057,3.37e-10,42;CL:0000791,1.97e-08,18;CL:0000789,1.97e-08,18;CL:0002420,1.97e-08,18;CL:0002419,1.97e-08,18;CL:0000790,1.97e-08,18;CL:0000084,1.43e-07,25;CL:0000827,1.43e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.68e-08;18!CL:0000051;7.89e-08;53!CL:0002057;1.00e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.29e-23!115;UBERON:0001049!7.46e-19!57;UBERON:0005068!7.46e-19!57;UBERON:0006241!7.46e-19!57;UBERON:0007135!7.46e-19!57;UBERON:0002780!1.41e-16!41;UBERON:0001890!1.41e-16!41;UBERON:0006240!1.41e-16!41;UBERON:0003080!3.08e-16!42;UBERON:0001893!1.16e-14!34;UBERON:0002616!1.25e-14!59;UBERON:0002020!1.43e-14!34;UBERON:0003528!1.43e-14!34;UBERON:0002791!3.93e-14!33;UBERON:0001869!7.13e-14!32;UBERON:0002390!2.23e-13!102;UBERON:0003061!2.23e-13!102;UBERON:0001017!5.68e-13!82;UBERON:0000955!7.58e-13!69;UBERON:0006238!7.58e-13!69;UBERON:0002619!5.21e-12!22;UBERON:0005743!9.37e-12!86;UBERON:0001950!6.34e-11!20;UBERON:0000956!6.72e-11!25;UBERON:0000203!6.72e-11!25;UBERON:0002193!8.53e-11!112;UBERON:0000073!4.83e-10!94;UBERON:0001016!4.83e-10!94;UBERON:0003075!1.22e-09!86;UBERON:0007284!1.22e-09!86;UBERON:0002346!1.77e-09!90;UBERON:0002371!9.44e-08!80;UBERON:0003056!2.33e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.03e-13;34!UBERON:0001869;2.11e-13;32!UBERON:0003528;2.24e-13;34!UBERON:0002020;2.24e-13;34!UBERON:0002791;3.81e-13;32!UBERON:0002780;8.60e-13;41!UBERON:0001890;8.60e-13;41!UBERON:0002619;1.60e-12;22!UBERON:0000956;1.42e-11;25!UBERON:0000203;1.42e-11;25!UBERON:0001950;2.13e-11;20!UBERON:0000073;5.16e-11;53!UBERON:0002616;5.16e-11;53!UBERON:0007023;2.19e-07;114!UBERON:0000955;6.35e-07;68 | |||
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| ||
|short_description=p2@CDC42SE2 | |||
}} | }} |
Latest revision as of 03:34, 20 September 2015
Short description: | p2@CDC42SE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDC42SE2_5end |
Coexpression cluster: | C4459_Eosinophils_Neutrophils_CD14_occipital_postcentral_parietal_medial |
Association with transcript: | 0bp_to_ENST00000395246, NM_001038702, NM_020240, uc003kvh.2, uc003kvi.2, uc003kvj.2, uc003kvk.2_5end |
EntrezGene: | CDC42SE2 |
HGNC: | 18547 |
UniProt: | Q9NRR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.12e-23 | 114 |
neural tube | 3.60e-20 | 56 |
neural rod | 3.60e-20 | 56 |
future spinal cord | 3.60e-20 | 56 |
neural keel | 3.60e-20 | 56 |
regional part of nervous system | 1.37e-18 | 53 |
regional part of brain | 1.37e-18 | 53 |
regional part of forebrain | 2.52e-17 | 41 |
forebrain | 2.52e-17 | 41 |
anterior neural tube | 2.52e-17 | 41 |
future forebrain | 2.52e-17 | 41 |
hematopoietic system | 1.58e-16 | 98 |
blood island | 1.58e-16 | 98 |
telencephalon | 2.57e-15 | 34 |
brain grey matter | 3.21e-15 | 34 |
gray matter | 3.21e-15 | 34 |
cerebral hemisphere | 1.73e-14 | 32 |
regional part of telencephalon | 3.22e-14 | 32 |
hemolymphoid system | 1.17e-13 | 108 |
central nervous system | 7.06e-13 | 81 |
brain | 7.54e-13 | 68 |
future brain | 7.54e-13 | 68 |
regional part of cerebral cortex | 1.57e-12 | 22 |
neocortex | 2.16e-11 | 20 |
cerebral cortex | 2.30e-11 | 25 |
pallium | 2.30e-11 | 25 |
nervous system | 1.44e-10 | 89 |
bone marrow | 3.82e-10 | 76 |
neural plate | 5.40e-10 | 82 |
presumptive neural plate | 5.40e-10 | 82 |
neurectoderm | 9.46e-10 | 86 |
immune system | 1.01e-09 | 93 |
pre-chordal neural plate | 8.32e-09 | 61 |
bone element | 4.39e-08 | 82 |