FFCP PHASE1:Hg19::chr7:115898149..115898224,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26136 | |EntrezGene=26136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14620 | |HGNC=14620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-122bp_to_AF147329_5end | |association_with_transcript=-122bp_to_AF147329_5end | ||
|cluster_id=chr7:115898149..115898224,+ | |||
|coexpression_cluster_id=C1983 | |coexpression_cluster_id=C1983 | ||
|description=CAGE_peak_4_at_TES_5end | |description=CAGE_peak_4_at_TES_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!9.82e-18!42;CL:0000860!2.04e-17!45;CL:0002087!4.43e-13!119;CL:0002194!1.20e-11!63;CL:0000576!1.20e-11!63;CL:0000040!1.20e-11!63;CL:0000559!1.20e-11!63;CL:0002009!1.80e-11!65;CL:0002031!7.92e-10!124;CL:0000738!1.56e-09!140;CL:0000557!9.43e-09!71;CL:0000839!2.27e-08!70;CL:0000766!1.37e-07!76;CL:0000063!7.24e-07!578 | |ontology_enrichment_celltype=CL:0002057!9.82e-18!42;CL:0000860!2.04e-17!45;CL:0002087!4.43e-13!119;CL:0002194!1.20e-11!63;CL:0000576!1.20e-11!63;CL:0000040!1.20e-11!63;CL:0000559!1.20e-11!63;CL:0002009!1.80e-11!65;CL:0002031!7.92e-10!124;CL:0000738!1.56e-09!140;CL:0000557!9.43e-09!71;CL:0000839!2.27e-08!70;CL:0000766!1.37e-07!76;CL:0000063!7.24e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.17e-20;33!CL:0002057;5.17e-20;33!CL:0000473;7.56e-13;39!CL:0000234;7.56e-13;39!CL:0000576;3.07e-10;48 | |ontology_enrichment_celltype_v019=CL:0000860;5.17e-20;33!CL:0002057;5.17e-20;33!CL:0000473;7.56e-13;39!CL:0000234;7.56e-13;39!CL:0000576;3.07e-10;48 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.74e-20,42;CL:0002057,3.74e-20,42;CL:0000473,7.65e-17,48;CL:0000234,7.65e-17,48;CL:0002009,6.78e-12,61;CL:0002194,9.05e-12,59;CL:0000576,9.05e-12,59;CL:0000040,9.05e-12,59;CL:0000559,9.05e-12,59;CL:0002087,9.23e-11,115;CL:0000557,1.34e-09,67;CL:0000839,4.13e-09,66;CL:0002031,8.52e-09,120;CL:0000738,1.18e-08,136;CL:0000766,6.57e-08,72 | |||
|ontology_enrichment_development_v019=CL:0002057;3.01e-14;42 | |ontology_enrichment_development_v019=CL:0002057;3.01e-14;42 | ||
|ontology_enrichment_disease=DOID:305!1.69e-09!106;DOID:0050687!1.63e-08!143 | |ontology_enrichment_disease=DOID:305!1.69e-09!106;DOID:0050687!1.63e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.29e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.15e-08!102;UBERON:0003061!3.15e-08!102;UBERON:0002371!1.15e-07!80;UBERON:0002193!3.47e-07!112 | |ontology_enrichment_uberon=UBERON:0002390!3.15e-08!102;UBERON:0003061!3.15e-08!102;UBERON:0002371!1.15e-07!80;UBERON:0002193!3.47e-07!112 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.76e-08,76;UBERON:0004765,5.05e-08,90;UBERON:0002390,1.85e-07,98;UBERON:0003061,1.85e-07,98;UBERON:0004119,6.37e-07,160;UBERON:0000925,6.37e-07,160;UBERON:0006595,6.37e-07,160;UBERON:0001474,9.32e-07,82 | |||
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| ||
|short_description=p4@TES | |short_description=p4@TES | ||
}} | }} |
Latest revision as of 07:06, 25 September 2015
Short description: | p4@TES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TES_5end |
Coexpression cluster: | C1983_gastric_CD14_squamous_amniotic_myeloma_Placental_Wilms |
Association with transcript: | -122bp_to_AF147329_5end |
EntrezGene: | TES |
HGNC: | 14620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.74e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.74e-20 | 42 |
defensive cell | 7.65e-17 | 48 |
phagocyte | 7.65e-17 | 48 |
macrophage dendritic cell progenitor | 6.78e-12 | 61 |
monopoietic cell | 9.05e-12 | 59 |
monocyte | 9.05e-12 | 59 |
monoblast | 9.05e-12 | 59 |
promonocyte | 9.05e-12 | 59 |
nongranular leukocyte | 9.23e-11 | 115 |
granulocyte monocyte progenitor cell | 1.34e-09 | 67 |
myeloid lineage restricted progenitor cell | 4.13e-09 | 66 |
hematopoietic lineage restricted progenitor cell | 8.52e-09 | 120 |
leukocyte | 1.18e-08 | 136 |
myeloid leukocyte | 6.57e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.76e-08 | 76 |
skeletal element | 5.05e-08 | 90 |
hematopoietic system | 1.85e-07 | 98 |
blood island | 1.85e-07 | 98 |
endoderm-derived structure | 6.37e-07 | 160 |
endoderm | 6.37e-07 | 160 |
presumptive endoderm | 6.37e-07 | 160 |
bone element | 9.32e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.29e-07 | 106 |