FF:10036-101E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005831 | ||
|accession_numbers=CAGE;DRX008694;DRR009566;DRZ000991;DRZ002376;DRZ012341;DRZ013726 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002902,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0009899,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010036 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.65!448.42!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!282.30!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.37!234.44!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.20!157.40!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.19!170.40!RORB;;chr17:53342311..53342400,+!p1@HLF!2.12!150.00!HLF;;chr21:34398234..34398250,+!p1@OLIG2!2.04!107.54!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.99!199.52!C11orf9;;chr4:57547454..57547469,-!p1@HOPX!1.95!88.18!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.88!75.66!FOXG1;;chr4:81118647..81118666,+!p1@PRDM8!1.87!95.78!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.84!80.43!ZNF365;;chr17:37764128..37764258,-!p1@NEUROD2!1.82!65.01!NEUROD2;;chr19:13135386..13135435,+!p4@NFIX!1.82!64.87!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.81!63.14!NFIX;;chr2:162272785..162272836,+!p1@TBR1!1.79!60.79!TBR1;;chr8:40755333..40755352,-!p1@ZMAT4!1.79!60.65!ZMAT4;;chr5:88178983..88179012,-!p1@MEF2C!1.78!432.23!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.77!57.82!KCNIP3;;chr15:80735246..80735321,+!p3@ARNT2!1.73!52.91!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.71!125.31!ZNF483;;chr2:60781201..60781258,-!p3@BCL11A!1.70!49.59!BCL11A;;chr15:80733570..80733659,+!p2@ARNT2!1.67!45.51!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.44!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.64!42.67!OLIG1;;chr2:2334997..2335053,-!p1@MYT1L!1.63!41.22!MYT1L;;chr18:53070846..53070902,-!p6@TCF4!1.61!39.90!TCF4;;chr12:26277817..26277863,-!p2@BHLHE41!1.59!50.83!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.62!POU3F3;;chr22:41763452..41763466,+!p2@TEF!1.59!37.55!TEF;;chr8:145560371..145560449,-!p1@SCRT1!1.58!37.34!SCRT1;;chr2:145277882..145277967,-!p3@ZEB2!1.55!58.85!ZEB2;;chrX:25034067..25034088,-!p1@ARX!1.54!33.47!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.81!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.52!32.02!PKNOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.51!120.26!MEF2C;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.60!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.50!30.71!NKX6-2;;chr14:29236269..29236285,+!p3@FOXG1!1.50!30.50!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.61!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.48!41.84!CSRNP3;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.63!ZNF385A;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.35!RFX4;;chr11:113930425..113930471,+!p1@ZBTB16!1.46!39.42!ZBTB16;;chr19:57352109..57352153,-!p2@ZIM2!1.45!27.46!ZIM2;;chr2:95963120..95963136,+!p2@KCNIP3!1.44!26.28!KCNIP3;;chr14:29234581..29234601,+!p2@FOXG1!1.42!25.03!FOXG1;;chr8:145560111..145560165,-!p2@SCRT1!1.42!25.03!SCRT1;;chr2:162272889..162272915,+!p2@TBR1!1.41!24.69!TBR1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.54!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.40!24.34!SOX2;;chr4:57522166..57522260,-!p2@HOPX!1.39!27.18!HOPX;;chr17:7492684..7492778,-!p2@SOX15!1.38!47.44!SOX15;;chr11:125034605..125034636,+!p2@PKNOX2!1.36!21.85!PKNOX2;;chr1:151032860..151032918,+!p1@MLLT11!1.33!236.93!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.33!20.61!LHX2;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.54!NPAS3;;chr19:13135566..13135577,+!p9@NFIX!1.33!20.33!NFIX;;chr1:2461692..2461710,-!p1@HES5!1.33!20.19!HES5;;chr12:106976678..106976708,+!p2@RFX4!1.31!19.50!RFX4;;chr19:38720294..38720348,-!p1@DPF1!1.30!23.58!DPF1;;chr10:48355030..48355090,+!p1@ZNF488!1.29!24.00!ZNF488;;chr2:162273241..162273253,+!p4@TBR1!1.29!18.67!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.29!18.53!HIF3A;;chr19:13135731..13135787,+!p10@NFIX!1.28!18.26!NFIX;;chr8:53322304..53322340,-!p1@ST18!1.27!17.57!ST18;;chr17:38256822..38256851,-!p1@NR1D1!1.26!133.75!NR1D1;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.08!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.25!16.81!TBR1;;chr10:64133862..64133884,+!p4@ZNF365!1.25!16.67!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.22!15.49!SMARCE1;;chr2:60780607..60780624,-!p2@BCL11A!1.21!46.20!BCL11A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.35!POU3F3;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr1:214161272..214161322,+!p1@PROX1!1.20!20.82!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.20!18.19!NR2F1;;chr6:19837592..19837621,+!p1@ID4!1.19!86.93!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.51!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!1.19!14.66!ZNF385B;;chr2:162273196..162273210,+!p5@TBR1!1.19!14.52!TBR1;;chr15:31631789..31631811,+!p13@KLF13!1.19!14.32!KLF13;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.14!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.04!KLF13;;chr2:180726331..180726344,-!p5@ZNF385B!1.18!14.04!ZNF385B;;chr9:77112225..77112238,+!p2@RORB!1.18!13.97!RORB;;chr20:62680984..62680999,-!p1@SOX18!1.15!17.50!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.14!132.16!SOX9;;chr10:119302232..119302265,+!p1@EMX2!1.14!12.66!EMX2;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.82!MLLT11;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.59!HIF3A;;chr2:166428839..166428859,+!p2@CSRNP3!1.13!12.45!CSRNP3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.28!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.12!12.24!ZSCAN1;;chr2:162273254..162273267,+!p6@TBR1!1.12!12.10!TBR1;;chr20:42544782..42544828,+!p4@TOX2!1.11!11.83!TOX2;;chr19:30863271..30863338,+!p1@ZNF536!1.11!11.83!ZNF536;;chr19:49140609..49140643,-!p1@DBP!1.10!65.49!DBP;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.85!EGR3;;chr7:73038839..73038862,-!p1@MLXIPL!1.10!11.55!MLXIPL;;chr17:38256877..38256900,-!p2@NR1D1!1.09!36.24!NR1D1;;chr19:57183114..57183145,-!p1@ZNF835!1.09!12.79!ZNF835;;chr11:125034586..125034604,+!p3@PKNOX2!1.09!11.41!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.08!11.00!ASCL1;;chr10:64133910..64133925,+!p5@ZNF365!1.08!10.93!ZNF365;;chr19:4065848..4065909,-!p4@ZBTB7A!1.07!21.30!ZBTB7A;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr5:92919375..92919438,+!p6@NR2F1!1.07!11.69!NR2F1;;chr17:4890919..4890985,-!p1@CAMTA2!1.06!98.20!CAMTA2;;chr2:239148671..239148686,-!p1@HES6!1.06!38.87!HES6;;chr3:24536253..24536328,-!p1@THRB!1.06!19.85!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.06!17.22!ZBTB16;;chr6:143266185..143266238,-!p2@HIVEP2!1.06!14.38!HIVEP2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.14!TUB;;chr12:54785054..54785072,-!p4@ZNF385A!1.06!11.76!ZNF385A;;chr19:3359158..3359209,+!p5@NFIC!1.06!10.58!NFIC;;chr7:31380292..31380351,-!p1@NEUROD6!1.06!10.44!NEUROD6;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.37!ZNF727;;chr3:126076242..126076257,-!p1@KLF15!1.05!12.79!KLF15;;chr2:162273101..162273118,+!p7@TBR1!1.05!10.10!TBR1;;chr20:42574529..42574563,+!p3@TOX2!1.05!10.10!TOX2;;chrX:106959661..106959763,-!p4@TSC22D3!1.04!29.81!TSC22D3;;chrX:118739782..118739829,-!p2@NKRF!1.04!10.03!NKRF;;chr1:244214577..244214593,+!p1@ZNF238!1.04!9.96!ZNF238;;chr22:41777927..41777971,+!p1@TEF!1.03!82.85!TEF;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.18!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.90!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!1.03!9.61!HOPX;;chr19:7580549..7580596,+!p3@ZNF358!1.03!9.61!ZNF358;;chr13:100634031..100634045,+!p1@ZIC2!1.02!9.54!ZIC2;;chr2:42721205..42721307,+!p4@MTA3!1.02!9.47!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.01!31.19!RERE;;chr19:3359257..3359362,+!p3@NFIC!1.01!28.56!NFIC;;chr2:2330039..2330072,-!p6@MYT1L!1.01!9.27!MYT1L;;chr9:126774058..126774081,+!p3@LHX2!1.01!9.13!LHX2;;chr11:31832658..31832681,-!p1@PAX6!1.01!9.13!PAX6;;chr16:51185318..51185348,-!p2@SALL1!1.00!9.06!SALL1;;chr15:80696410..80696477,+!p6@ARNT2!1.00!8.92!ARNT2;;chr1:217263131..217263207,-!p4@ESRRG!1.00!8.92!ESRRG;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.29!SMARCD3;;chr2:74229812..74229867,+!p1@TET3!0.99!22.61!TET3;;chr6:1312325..1312340,+!p1@FOXQ1!0.99!14.45!FOXQ1;;chr17:38465413..38465438,+!p5@RARA!0.99!14.25!RARA;;chr8:22550530..22550609,-!p2@EGR3!0.99!8.85!EGR3;;chr11:113930401..113930422,+!p3@ZBTB16!0.99!8.85!ZBTB16;;chr11:66188503..66188511,+!p1@NPAS4!0.99!8.78!NPAS4;;chr21:34442584..34442587,+!p3@OLIG1!0.99!8.71!OLIG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.98!578.43!TSC22D1;;chr8:60031682..60031710,-!p2@TOX!0.98!14.04!TOX;;chr2:73520667..73520683,-!p1@EGR4!0.98!8.64!EGR4;;chr17:38219209..38219230,+!p1@THRA!0.97!111.62!THRA;;chr3:33482052..33482116,-!p2@UBP1!0.97!12.93!UBP1;;chr10:64134045..64134083,+!p3@ZNF365!0.97!8.30!ZNF365;;chr19:47523058..47523114,+!p1@NPAS1!0.97!8.30!NPAS1;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.30!LHX6;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.64!SATB2;;chr15:31631813..31631825,+!p17@KLF13!0.96!8.16!KLF13;;chr16:85932760..85932775,+!p1@IRF8!0.96!8.16!IRF8;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.09!CSRNP3;;chr2:2328725..2328739,-!p5@MYT1L!0.96!8.02!MYT1L;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.02!SALL1;;chr17:38219143..38219154,+!p2@THRA!0.95!28.84!THRA;;chr15:31618903..31618962,+!p3@KLF13!0.95!22.55!KLF13;;chr1:151032739..151032748,+!p6@MLLT11!0.95!9.89!MLLT11;;chr14:33408072..33408114,+!p2@NPAS3!0.95!9.34!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!0.95!7.88!DLX1;;chrY:21906761..21906810,-!p2@KDM5D!0.95!7.81!KDM5D;;chr2:145275982..145276003,-!p7@ZEB2!0.94!7.75!ZEB2;;chr11:47400078..47400106,-!p1@SPI1!0.94!7.75!SPI1;;chr5:138609489..138609542,+!p8@MATR3!0.94!7.75!MATR3;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.68!ZNF385D;;chr5:88179230..88179270,-!p4@MEF2C!0.93!15.01!MEF2C;;chr11:8040739..8040815,+!p4@TUB!0.93!7.61!TUB;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.54!ASCL1;;chr4:149365827..149365870,-!p5@NR3C2!0.93!7.54!NR3C2;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.65!BHLHE41;;chr6:126112039..126112062,+!p8@NCOA7!0.92!8.85!NCOA7;;chr2:2335070..2335098,-!p4@MYT1L!0.92!7.40!MYT1L;;chr18:53070913..53070933,-!p16@TCF4!0.92!7.40!TCF4;;chr2:73144617..73144654,+!p1@EMX1!0.92!7.26!EMX1;;chr14:75894391..75894435,+!p2@JDP2!0.91!8.30!JDP2;;chr9:126773880..126773895,+!p2@LHX2!0.91!7.12!LHX2;;chrX:82763292..82763317,+!p1@POU3F4!0.91!7.12!POU3F4;;chr15:80696666..80696700,+!p4@ARNT2!0.91!7.05!ARNT2;;chr2:180726254..180726275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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.65!448.42!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!282.30!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.37!234.44!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.20!157.40!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.19!170.40!RORB;;chr17:53342311..53342400,+!p1@HLF!2.12!150.00!HLF;;chr21:34398234..34398250,+!p1@OLIG2!2.04!107.54!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.99!199.52!C11orf9;;chr4:57547454..57547469,-!p1@HOPX!1.95!88.18!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.88!75.66!FOXG1;;chr4:81118647..81118666,+!p1@PRDM8!1.87!95.78!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.84!80.43!ZNF365;;chr17:37764128..37764258,-!p1@NEUROD2!1.82!65.01!NEUROD2;;chr19:13135386..13135435,+!p4@NFIX!1.82!64.87!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.81!63.14!NFIX;;chr2:162272785..162272836,+!p1@TBR1!1.79!60.79!TBR1;;chr8:40755333..40755352,-!p1@ZMAT4!1.79!60.65!ZMAT4;;chr5:88178983..88179012,-!p1@MEF2C!1.78!432.23!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.77!57.82!KCNIP3;;chr15:80735246..80735321,+!p3@ARNT2!1.73!52.91!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.71!125.31!ZNF483;;chr2:60781201..60781258,-!p3@BCL11A!1.70!49.59!BCL11A;;chr15:80733570..80733659,+!p2@ARNT2!1.67!45.51!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.44!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.64!42.67!OLIG1;;chr2:2334997..2335053,-!p1@MYT1L!1.63!41.22!MYT1L;;chr18:53070846..53070902,-!p6@TCF4!1.61!39.90!TCF4;;chr12:26277817..26277863,-!p2@BHLHE41!1.59!50.83!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.62!POU3F3;;chr22:41763452..41763466,+!p2@TEF!1.59!37.55!TEF;;chr8:145560371..145560449,-!p1@SCRT1!1.58!37.34!SCRT1;;chr2:145277882..145277967,-!p3@ZEB2!1.55!58.85!ZEB2;;chrX:25034067..25034088,-!p1@ARX!1.54!33.47!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.81!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.52!32.02!PKNOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.51!120.26!MEF2C;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.60!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.50!30.71!NKX6-2;;chr14:29236269..29236285,+!p3@FOXG1!1.50!30.50!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.61!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.48!41.84!CSRNP3;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.63!ZNF385A;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.35!RFX4;;chr11:113930425..113930471,+!p1@ZBTB16!1.46!39.42!ZBTB16;;chr19:57352109..57352153,-!p2@ZIM2!1.45!27.46!ZIM2;;chr2:95963120..95963136,+!p2@KCNIP3!1.44!26.28!KCNIP3;;chr14:29234581..29234601,+!p2@FOXG1!1.42!25.03!FOXG1;;chr8:145560111..145560165,-!p2@SCRT1!1.42!25.03!SCRT1;;chr2:162272889..162272915,+!p2@TBR1!1.41!24.69!TBR1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.54!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.40!24.34!SOX2;;chr4:57522166..57522260,-!p2@HOPX!1.39!27.18!HOPX;;chr17:7492684..7492778,-!p2@SOX15!1.38!47.44!SOX15;;chr11:125034605..125034636,+!p2@PKNOX2!1.36!21.85!PKNOX2;;chr1:151032860..151032918,+!p1@MLLT11!1.33!236.93!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.33!20.61!LHX2;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.54!NPAS3;;chr19:13135566..13135577,+!p9@NFIX!1.33!20.33!NFIX;;chr1:2461692..2461710,-!p1@HES5!1.33!20.19!HES5;;chr12:106976678..106976708,+!p2@RFX4!1.31!19.50!RFX4;;chr19:38720294..38720348,-!p1@DPF1!1.30!23.58!DPF1;;chr10:48355030..48355090,+!p1@ZNF488!1.29!24.00!ZNF488;;chr2:162273241..162273253,+!p4@TBR1!1.29!18.67!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.29!18.53!HIF3A;;chr19:13135731..13135787,+!p10@NFIX!1.28!18.26!NFIX;;chr8:53322304..53322340,-!p1@ST18!1.27!17.57!ST18;;chr17:38256822..38256851,-!p1@NR1D1!1.26!133.75!NR1D1;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.08!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.25!16.81!TBR1;;chr10:64133862..64133884,+!p4@ZNF365!1.25!16.67!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.22!15.49!SMARCE1;;chr2:60780607..60780624,-!p2@BCL11A!1.21!46.20!BCL11A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.35!POU3F3;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr1:214161272..214161322,+!p1@PROX1!1.20!20.82!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.20!18.19!NR2F1;;chr6:19837592..19837621,+!p1@ID4!1.19!86.93!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.51!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!1.19!14.66!ZNF385B;;chr2:162273196..162273210,+!p5@TBR1!1.19!14.52!TBR1;;chr15:31631789..31631811,+!p13@KLF13!1.19!14.32!KLF13;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.14!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.04!KLF13;;chr2:180726331..180726344,-!p5@ZNF385B!1.18!14.04!ZNF385B;;chr9:77112225..77112238,+!p2@RORB!1.18!13.97!RORB;;chr20:62680984..62680999,-!p1@SOX18!1.15!17.50!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.14!132.16!SOX9;;chr10:119302232..119302265,+!p1@EMX2!1.14!12.66!EMX2;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.82!MLLT11;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.59!HIF3A;;chr2:166428839..166428859,+!p2@CSRNP3!1.13!12.45!CSRNP3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.28!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.12!12.24!ZSCAN1;;chr2:162273254..162273267,+!p6@TBR1!1.12!12.10!TBR1;;chr20:42544782..42544828,+!p4@TOX2!1.11!11.83!TOX2;;chr19:30863271..30863338,+!p1@ZNF536!1.11!11.83!ZNF536;;chr19:49140609..49140643,-!p1@DBP!1.10!65.49!DBP;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.85!EGR3;;chr7:73038839..73038862,-!p1@MLXIPL!1.10!11.55!MLXIPL;;chr17:38256877..38256900,-!p2@NR1D1!1.09!36.24!NR1D1;;chr19:57183114..57183145,-!p1@ZNF835!1.09!12.79!ZNF835;;chr11:125034586..125034604,+!p3@PKNOX2!1.09!11.41!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.08!11.00!ASCL1;;chr10:64133910..64133925,+!p5@ZNF365!1.08!10.93!ZNF365;;chr19:4065848..4065909,-!p4@ZBTB7A!1.07!21.30!ZBTB7A;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr5:92919375..92919438,+!p6@NR2F1!1.07!11.69!NR2F1;;chr17:4890919..4890985,-!p1@CAMTA2!1.06!98.20!CAMTA2;;chr2:239148671..239148686,-!p1@HES6!1.06!38.87!HES6;;chr3:24536253..24536328,-!p1@THRB!1.06!19.85!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.06!17.22!ZBTB16;;chr6:143266185..143266238,-!p2@HIVEP2!1.06!14.38!HIVEP2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.14!TUB;;chr12:54785054..54785072,-!p4@ZNF385A!1.06!11.76!ZNF385A;;chr19:3359158..3359209,+!p5@NFIC!1.06!10.58!NFIC;;chr7:31380292..31380351,-!p1@NEUROD6!1.06!10.44!NEUROD6;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.37!ZNF727;;chr3:126076242..126076257,-!p1@KLF15!1.05!12.79!KLF15;;chr2:162273101..162273118,+!p7@TBR1!1.05!10.10!TBR1;;chr20:42574529..42574563,+!p3@TOX2!1.05!10.10!TOX2;;chrX:106959661..106959763,-!p4@TSC22D3!1.04!29.81!TSC22D3;;chrX:118739782..118739829,-!p2@NKRF!1.04!10.03!NKRF;;chr1:244214577..244214593,+!p1@ZNF238!1.04!9.96!ZNF238;;chr22:41777927..41777971,+!p1@TEF!1.03!82.85!TEF;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.18!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.90!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!1.03!9.61!HOPX;;chr19:7580549..7580596,+!p3@ZNF358!1.03!9.61!ZNF358;;chr13:100634031..100634045,+!p1@ZIC2!1.02!9.54!ZIC2;;chr2:42721205..42721307,+!p4@MTA3!1.02!9.47!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.01!31.19!RERE;;chr19:3359257..3359362,+!p3@NFIC!1.01!28.56!NFIC;;chr2:2330039..2330072,-!p6@MYT1L!1.01!9.27!MYT1L;;chr9:126774058..126774081,+!p3@LHX2!1.01!9.13!LHX2;;chr11:31832658..31832681,-!p1@PAX6!1.01!9.13!PAX6;;chr16:51185318..51185348,-!p2@SALL1!1.00!9.06!SALL1;;chr15:80696410..80696477,+!p6@ARNT2!1.00!8.92!ARNT2;;chr1:217263131..217263207,-!p4@ESRRG!1.00!8.92!ESRRG;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.29!SMARCD3;;chr2:74229812..74229867,+!p1@TET3!0.99!22.61!TET3;;chr6:1312325..1312340,+!p1@FOXQ1!0.99!14.45!FOXQ1;;chr17:38465413..38465438,+!p5@RARA!0.99!14.25!RARA;;chr8:22550530..22550609,-!p2@EGR3!0.99!8.85!EGR3;;chr11:113930401..113930422,+!p3@ZBTB16!0.99!8.85!ZBTB16;;chr11:66188503..66188511,+!p1@NPAS4!0.99!8.78!NPAS4;;chr21:34442584..34442587,+!p3@OLIG1!0.99!8.71!OLIG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.98!578.43!TSC22D1;;chr8:60031682..60031710,-!p2@TOX!0.98!14.04!TOX;;chr2:73520667..73520683,-!p1@EGR4!0.98!8.64!EGR4;;chr17:38219209..38219230,+!p1@THRA!0.97!111.62!THRA;;chr3:33482052..33482116,-!p2@UBP1!0.97!12.93!UBP1;;chr10:64134045..64134083,+!p3@ZNF365!0.97!8.30!ZNF365;;chr19:47523058..47523114,+!p1@NPAS1!0.97!8.30!NPAS1;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.30!LHX6;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.64!SATB2;;chr15:31631813..31631825,+!p17@KLF13!0.96!8.16!KLF13;;chr16:85932760..85932775,+!p1@IRF8!0.96!8.16!IRF8;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.09!CSRNP3;;chr2:2328725..2328739,-!p5@MYT1L!0.96!8.02!MYT1L;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.02!SALL1;;chr17:38219143..38219154,+!p2@THRA!0.95!28.84!THRA;;chr15:31618903..31618962,+!p3@KLF13!0.95!22.55!KLF13;;chr1:151032739..151032748,+!p6@MLLT11!0.95!9.89!MLLT11;;chr14:33408072..33408114,+!p2@NPAS3!0.95!9.34!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!0.95!7.88!DLX1;;chrY:21906761..21906810,-!p2@KDM5D!0.95!7.81!KDM5D;;chr2:145275982..145276003,-!p7@ZEB2!0.94!7.75!ZEB2;;chr11:47400078..47400106,-!p1@SPI1!0.94!7.75!SPI1;;chr5:138609489..138609542,+!p8@MATR3!0.94!7.75!MATR3;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.68!ZNF385D;;chr5:88179230..88179270,-!p4@MEF2C!0.93!15.01!MEF2C;;chr11:8040739..8040815,+!p4@TUB!0.93!7.61!TUB;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.54!ASCL1;;chr4:149365827..149365870,-!p5@NR3C2!0.93!7.54!NR3C2;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.65!BHLHE41;;chr6:126112039..126112062,+!p8@NCOA7!0.92!8.85!NCOA7;;chr2:2335070..2335098,-!p4@MYT1L!0.92!7.40!MYT1L;;chr18:53070913..53070933,-!p16@TCF4!0.92!7.40!TCF4;;chr2:73144617..73144654,+!p1@EMX1!0.92!7.26!EMX1;;chr14:75894391..75894435,+!p2@JDP2!0.91!8.30!JDP2;;chr9:126773880..126773895,+!p2@LHX2!0.91!7.12!LHX2;;chrX:82763292..82763317,+!p1@POU3F4!0.91!7.12!POU3F4;;chr15:80696666..80696700,+!p4@ARNT2!0.91!7.05!ARNT2;;chr2:180726254..180726275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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10036-101E9 | |id=FF:10036-101E9 | ||
|is_a=EFO:0002091;;FF:0010036 | |is_a=EFO:0002091;;FF:0010036 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10643 | |||
|library_id_phase_based=2:CNhs10643 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10036 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10036 | |||
|name=occipital pole, adult, pool1 | |name=occipital pole, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10643,LSID658,release008,COMPLETED | |profile_hcage=CNhs10643,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636570 | |rna_catalog_number=Cat:636570 | ||
| Line 56: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+11 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=REST:4.79330172422;NHLH1,2:4.40217487638;EGR1..3:4.24709597376;AHR_ARNT_ARNT2:3.81312078124;TFAP2B:3.72374310131;ZFP161:3.7153058035;MTF1:3.68628939385;MTE{core}:3.67627363783;MYFfamily:3.6546355162;MED-1{core}:3.64715009147;PAX5:3.5624756072;ZBTB6:3.55361122272;HIC1:3.35427403297;PRRX1,2:3.30525209631;ATF2:3.1586385036;GTF2I:3.04483911264;RFX1:2.86499821593;SMAD1..7,9:2.80351786986;RREB1:2.75881231068;BREu{core}:2.70586333466;MZF1:2.65929981863;PATZ1:2.64758905736;CUX2:2.49194420254;LMO2:2.47578617152;JUN:2.47007770349;SOX5:2.37453487158;EBF1:2.3234231706;ESRRA:2.32109590914;MAZ:2.26433754753;SOX{8,9,10}:2.23314221655;PRDM1:2.23004559895;FOXM1:2.19911638312;GCM1,2:2.17573128001;TFDP1:2.15034591708;SOX2:2.03242877479;POU6F1:1.98439991211;RORA:1.94980081509;NFIX:1.89138643076;GFI1B:1.88730709373;NANOG:1.88270407056;DBP:1.8779125667;GTF2A1,2:1.86971573067;TGIF1:1.8188467734;OCT4_SOX2{dimer}:1.80894124815;NKX2-3_NKX2-5:1.76356866858;TFAP2{A,C}:1.76165848373;SOX17:1.755636331;ZNF238:1.7303088575;LEF1_TCF7_TCF7L1,2:1.69432376202;MAFB:1.66328855478;POU5F1:1.66316010883;ZNF423:1.64182229128;MYOD1:1.60624936497;PAX6:1.60434139916;FOXQ1:1.52822188603;NRF1:1.52142406739;NKX3-2:1.50428428861;EP300:1.49456041369;RFX2..5_RFXANK_RFXAP:1.47108619494;SP1:1.46033427854;NFIL3:1.40458640849;XBP1:1.22749565891;HOXA9_MEIS1:1.20732873973;KLF4:1.14440771639;ZEB1:1.13960812228;HAND1,2:1.13280550678;RBPJ:1.06299991613;HMGA1,2:1.04685951106;SREBF1,2:1.04371567251;FOX{F1,F2,J1}:0.961462005528;ARID5B:0.959112298965;MEF2{A,B,C,D}:0.893324093047;HOX{A4,D4}:0.86136060856;T:0.841725105608;HMX1:0.840448582267;XCPE1{core}:0.835951302952;ZNF143:0.828899078947;bHLH_family:0.770156442459;POU3F1..4:0.71309305975;TLX1..3_NFIC{dimer}:0.689245338701;ADNP_IRX_SIX_ZHX:0.680357962546;CDC5L:0.65414323073;CREB1:0.628608554313;CRX:0.619451830315;NR5A1,2:0.61171786296;SPZ1:0.580536564865;GATA4:0.552279117287;AR:0.509343472323;ZIC1..3:0.471092732225;GZF1:0.466677831292;YY1:0.423931232508;FOX{D1,D2}:0.419168824059;TBX4,5:0.37638577898;VSX1,2:0.361877585909;STAT1,3:0.348094323648;ZNF148:0.341024974284;ATF4:0.340210778088;TLX2:0.286169636279;ATF5_CREB3:0.245228710819;TFAP4:0.238961389495;FOXN1:0.193038921697;GFI1:0.135383950823;NFY{A,B,C}:0.112279279417;NFE2L2:0.0948824685263;PBX1:0.0453510128906;NANOG{mouse}:0.0447454938369;PAX2:0.0303278409457;MYBL2:0.014423933409;HBP1_HMGB_SSRP1_UBTF:-0.00465794828608;HOX{A6,A7,B6,B7}:-0.0211042721043;SNAI1..3:-0.0430524490652;IKZF1:-0.0432753333709;ESR1:-0.0479726397527;ZNF384:-0.0973644184526;NKX6-1,2:-0.146897778103;ONECUT1,2:-0.154019151206;NR3C1:-0.160938473407;TFCP2:-0.164292830766;FOXP3:-0.164858207982;PAX1,9:-0.167720664334;ALX1:-0.180907774138;NFE2L1:-0.183411440405;NR1H4:-0.197266708269;FOXL1:-0.294119854932;LHX3,4:-0.317303919172;NFE2:-0.327729995118;PAX3,7:-0.405685616157;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.417859290487;IRF7:-0.41952436695;BPTF:-0.442726876658;FOXA2:-0.461045743033;IKZF2:-0.484245718948;FOXP1:-0.498201119175;GLI1..3:-0.508873054379;NFATC1..3:-0.519803491551;PPARG:-0.534600014046;RXR{A,B,G}:-0.545079616283;GATA6:-0.563488985975;SPI1:-0.584627056104;TAL1_TCF{3,4,12}:-0.632321900482;POU1F1:-0.648434040601;FOSL2:-0.651221312912;TOPORS:-0.672595545647;STAT2,4,6:-0.679063280013;HNF1A:-0.681221125242;CEBPA,B_DDIT3:-0.68180755471;TP53:-0.697361774119;PDX1:-0.715738790148;ETS1,2:-0.738047302748;UFEwm:-0.740216194694;ATF6:-0.77137256272;BACH2:-0.780018370936;IRF1,2:-0.803401711181;FOX{I1,J2}:-0.810246839966;SPIB:-0.820838047;FOS_FOS{B,L1}_JUN{B,D}:-0.84266724856;FOXO1,3,4:-0.863839830173;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.886822168594;PAX8:-0.896369500342;TEF:-0.898511011488;HNF4A_NR2F1,2:-0.921690271995;TEAD1:-0.998881050996;RUNX1..3:-1.01793382027;HLF:-1.07479808189;DMAP1_NCOR{1,2}_SMARC:-1.08646303956;ELK1,4_GABP{A,B1}:-1.11837391389;NFKB1_REL_RELA:-1.12060446488;TBP:-1.14050488946;EN1,2:-1.17961535345;HES1:-1.19525661897;HIF1A:-1.19789813921;SRF:-1.20583080875;HSF1,2:-1.21395312081;PAX4:-1.22119259111;RXRA_VDR{dimer}:-1.2775273798;E2F1..5:-1.2809217393;FOXD3:-1.32424333839;STAT5{A,B}:-1.38113407508;ALX4:-1.39762848053;POU2F1..3:-1.45051280273;NKX2-2,8:-1.46796659188;MYB:-1.66927233252;ELF1,2,4:-1.86053711814;HOX{A5,B5}:-2.12272873033;PITX1..3:-2.40039175207;NKX2-1,4:-2.43401731361;NKX3-1:-2.47565738528;EVI1:-2.53646321578;ZBTB16:-2.7157160109;NR6A1:-2.73024818987;CDX1,2,4:-2.88922669902;AIRE:-3.06657392686 | |top_motifs=REST:4.79330172422;NHLH1,2:4.40217487638;EGR1..3:4.24709597376;AHR_ARNT_ARNT2:3.81312078124;TFAP2B:3.72374310131;ZFP161:3.7153058035;MTF1:3.68628939385;MTE{core}:3.67627363783;MYFfamily:3.6546355162;MED-1{core}:3.64715009147;PAX5:3.5624756072;ZBTB6:3.55361122272;HIC1:3.35427403297;PRRX1,2:3.30525209631;ATF2:3.1586385036;GTF2I:3.04483911264;RFX1:2.86499821593;SMAD1..7,9:2.80351786986;RREB1:2.75881231068;BREu{core}:2.70586333466;MZF1:2.65929981863;PATZ1:2.64758905736;CUX2:2.49194420254;LMO2:2.47578617152;JUN:2.47007770349;SOX5:2.37453487158;EBF1:2.3234231706;ESRRA:2.32109590914;MAZ:2.26433754753;SOX{8,9,10}:2.23314221655;PRDM1:2.23004559895;FOXM1:2.19911638312;GCM1,2:2.17573128001;TFDP1:2.15034591708;SOX2:2.03242877479;POU6F1:1.98439991211;RORA:1.94980081509;NFIX:1.89138643076;GFI1B:1.88730709373;NANOG:1.88270407056;DBP:1.8779125667;GTF2A1,2:1.86971573067;TGIF1:1.8188467734;OCT4_SOX2{dimer}:1.80894124815;NKX2-3_NKX2-5:1.76356866858;TFAP2{A,C}:1.76165848373;SOX17:1.755636331;ZNF238:1.7303088575;LEF1_TCF7_TCF7L1,2:1.69432376202;MAFB:1.66328855478;POU5F1:1.66316010883;ZNF423:1.64182229128;MYOD1:1.60624936497;PAX6:1.60434139916;FOXQ1:1.52822188603;NRF1:1.52142406739;NKX3-2:1.50428428861;EP300:1.49456041369;RFX2..5_RFXANK_RFXAP:1.47108619494;SP1:1.46033427854;NFIL3:1.40458640849;XBP1:1.22749565891;HOXA9_MEIS1:1.20732873973;KLF4:1.14440771639;ZEB1:1.13960812228;HAND1,2:1.13280550678;RBPJ:1.06299991613;HMGA1,2:1.04685951106;SREBF1,2:1.04371567251;FOX{F1,F2,J1}:0.961462005528;ARID5B:0.959112298965;MEF2{A,B,C,D}:0.893324093047;HOX{A4,D4}:0.86136060856;T:0.841725105608;HMX1:0.840448582267;XCPE1{core}:0.835951302952;ZNF143:0.828899078947;bHLH_family:0.770156442459;POU3F1..4:0.71309305975;TLX1..3_NFIC{dimer}:0.689245338701;ADNP_IRX_SIX_ZHX:0.680357962546;CDC5L:0.65414323073;CREB1:0.628608554313;CRX:0.619451830315;NR5A1,2:0.61171786296;SPZ1:0.580536564865;GATA4:0.552279117287;AR:0.509343472323;ZIC1..3:0.471092732225;GZF1:0.466677831292;YY1:0.423931232508;FOX{D1,D2}:0.419168824059;TBX4,5:0.37638577898;VSX1,2:0.361877585909;STAT1,3:0.348094323648;ZNF148:0.341024974284;ATF4:0.340210778088;TLX2:0.286169636279;ATF5_CREB3:0.245228710819;TFAP4:0.238961389495;FOXN1:0.193038921697;GFI1:0.135383950823;NFY{A,B,C}:0.112279279417;NFE2L2:0.0948824685263;PBX1:0.0453510128906;NANOG{mouse}:0.0447454938369;PAX2:0.0303278409457;MYBL2:0.014423933409;HBP1_HMGB_SSRP1_UBTF:-0.00465794828608;HOX{A6,A7,B6,B7}:-0.0211042721043;SNAI1..3:-0.0430524490652;IKZF1:-0.0432753333709;ESR1:-0.0479726397527;ZNF384:-0.0973644184526;NKX6-1,2:-0.146897778103;ONECUT1,2:-0.154019151206;NR3C1:-0.160938473407;TFCP2:-0.164292830766;FOXP3:-0.164858207982;PAX1,9:-0.167720664334;ALX1:-0.180907774138;NFE2L1:-0.183411440405;NR1H4:-0.197266708269;FOXL1:-0.294119854932;LHX3,4:-0.317303919172;NFE2:-0.327729995118;PAX3,7:-0.405685616157;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.417859290487;IRF7:-0.41952436695;BPTF:-0.442726876658;FOXA2:-0.461045743033;IKZF2:-0.484245718948;FOXP1:-0.498201119175;GLI1..3:-0.508873054379;NFATC1..3:-0.519803491551;PPARG:-0.534600014046;RXR{A,B,G}:-0.545079616283;GATA6:-0.563488985975;SPI1:-0.584627056104;TAL1_TCF{3,4,12}:-0.632321900482;POU1F1:-0.648434040601;FOSL2:-0.651221312912;TOPORS:-0.672595545647;STAT2,4,6:-0.679063280013;HNF1A:-0.681221125242;CEBPA,B_DDIT3:-0.68180755471;TP53:-0.697361774119;PDX1:-0.715738790148;ETS1,2:-0.738047302748;UFEwm:-0.740216194694;ATF6:-0.77137256272;BACH2:-0.780018370936;IRF1,2:-0.803401711181;FOX{I1,J2}:-0.810246839966;SPIB:-0.820838047;FOS_FOS{B,L1}_JUN{B,D}:-0.84266724856;FOXO1,3,4:-0.863839830173;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.886822168594;PAX8:-0.896369500342;TEF:-0.898511011488;HNF4A_NR2F1,2:-0.921690271995;TEAD1:-0.998881050996;RUNX1..3:-1.01793382027;HLF:-1.07479808189;DMAP1_NCOR{1,2}_SMARC:-1.08646303956;ELK1,4_GABP{A,B1}:-1.11837391389;NFKB1_REL_RELA:-1.12060446488;TBP:-1.14050488946;EN1,2:-1.17961535345;HES1:-1.19525661897;HIF1A:-1.19789813921;SRF:-1.20583080875;HSF1,2:-1.21395312081;PAX4:-1.22119259111;RXRA_VDR{dimer}:-1.2775273798;E2F1..5:-1.2809217393;FOXD3:-1.32424333839;STAT5{A,B}:-1.38113407508;ALX4:-1.39762848053;POU2F1..3:-1.45051280273;NKX2-2,8:-1.46796659188;MYB:-1.66927233252;ELF1,2,4:-1.86053711814;HOX{A5,B5}:-2.12272873033;PITX1..3:-2.40039175207;NKX2-1,4:-2.43401731361;NKX3-1:-2.47565738528;EVI1:-2.53646321578;ZBTB16:-2.7157160109;NR6A1:-2.73024818987;CDX1,2,4:-2.88922669902;AIRE:-3.06657392686 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10036-101E9;search_select_hide=table117:FF:10036-101E9 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | occipital pole, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10643 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10643
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10643
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0234 |
| 10 | 10 | 0.0173 |
| 100 | 100 | 0.248 |
| 101 | 101 | 0.86 |
| 102 | 102 | 0.757 |
| 103 | 103 | 0.22 |
| 104 | 104 | 0.244 |
| 105 | 105 | 0.406 |
| 106 | 106 | 0.0891 |
| 107 | 107 | 0.137 |
| 108 | 108 | 0.839 |
| 109 | 109 | 0.016 |
| 11 | 11 | 0.0151 |
| 110 | 110 | 0.0331 |
| 111 | 111 | 0.0419 |
| 112 | 112 | 0.358 |
| 113 | 113 | 0.845 |
| 114 | 114 | 0.0596 |
| 115 | 115 | 0.892 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.00745 |
| 118 | 118 | 0.0813 |
| 119 | 119 | 0.0989 |
| 12 | 12 | 0.92 |
| 120 | 120 | 0.132 |
| 121 | 121 | 0.708 |
| 122 | 122 | 0.391 |
| 123 | 123 | 0.283 |
| 124 | 124 | 0.066 |
| 125 | 125 | 0.161 |
| 126 | 126 | 0.0375 |
| 127 | 127 | 0.499 |
| 128 | 128 | 0.22 |
| 129 | 129 | 0.666 |
| 13 | 13 | 0.00105 |
| 130 | 130 | 0.752 |
| 131 | 131 | 0.124 |
| 132 | 132 | 0.67 |
| 133 | 133 | 0.00594 |
| 134 | 134 | 0.264 |
| 135 | 135 | 0.193 |
| 136 | 136 | 0.0154 |
| 137 | 137 | 0.644 |
| 138 | 138 | 0.771 |
| 139 | 139 | 0.0686 |
| 14 | 14 | 0.91 |
| 140 | 140 | 0.0831 |
| 141 | 141 | 0.188 |
| 142 | 142 | 0.803 |
| 143 | 143 | 0.0106 |
| 144 | 144 | 0.8 |
| 145 | 145 | 0.0795 |
| 146 | 146 | 0.75 |
| 147 | 147 | 0.878 |
| 148 | 148 | 0.116 |
| 149 | 149 | 0.388 |
| 15 | 15 | 0.0661 |
| 150 | 150 | 0.181 |
| 151 | 151 | 0.705 |
| 152 | 152 | 0.194 |
| 153 | 153 | 0.539 |
| 154 | 154 | 0.71 |
| 155 | 155 | 0.316 |
| 156 | 156 | 0.518 |
| 157 | 157 | 0.45 |
| 158 | 158 | 0.591 |
| 159 | 159 | 0.366 |
| 16 | 16 | 0.0871 |
| 160 | 160 | 0.215 |
| 161 | 161 | 0.216 |
| 162 | 162 | 0.971 |
| 163 | 163 | 0.886 |
| 164 | 164 | 0.0142 |
| 165 | 165 | 0.0378 |
| 166 | 166 | 0.836 |
| 167 | 167 | 0.161 |
| 168 | 168 | 0.68 |
| 169 | 169 | 0.00692 |
| 17 | 17 | 0.215 |
| 18 | 18 | 0.238 |
| 19 | 19 | 0.249 |
| 2 | 2 | 0.899 |
| 20 | 20 | 0.0854 |
| 21 | 21 | 0.101 |
| 22 | 22 | 0.305 |
| 23 | 23 | 0.474 |
| 24 | 24 | 0.142 |
| 25 | 25 | 0.446 |
| 26 | 26 | 6.57634e-5 |
| 27 | 27 | 0.951 |
| 28 | 28 | 0.571 |
| 29 | 29 | 0.00849 |
| 3 | 3 | 0.0179 |
| 30 | 30 | 0.431 |
| 31 | 31 | 0.972 |
| 32 | 32 | 0.0394 |
| 33 | 33 | 0.0768 |
| 34 | 34 | 0.973 |
| 35 | 35 | 0.461 |
| 36 | 36 | 0.0842 |
| 37 | 37 | 0.0421 |
| 38 | 38 | 0.347 |
| 39 | 39 | 0.306 |
| 4 | 4 | 0.944 |
| 40 | 40 | 0.0741 |
| 41 | 41 | 0.492 |
| 42 | 42 | 0.14 |
| 43 | 43 | 0.108 |
| 44 | 44 | 0.0941 |
| 45 | 45 | 0.94 |
| 46 | 46 | 0.0481 |
| 47 | 47 | 0.0583 |
| 48 | 48 | 0.0561 |
| 49 | 49 | 0.119 |
| 5 | 5 | 0.376 |
| 50 | 50 | 0.436 |
| 51 | 51 | 0.55 |
| 52 | 52 | 0.747 |
| 53 | 53 | 0.998 |
| 54 | 54 | 0.506 |
| 55 | 55 | 0.295 |
| 56 | 56 | 0.507 |
| 57 | 57 | 0.212 |
| 58 | 58 | 0.25 |
| 59 | 59 | 0.22 |
| 6 | 6 | 0.475 |
| 60 | 60 | 0.0974 |
| 61 | 61 | 0.0613 |
| 62 | 62 | 0.136 |
| 63 | 63 | 0.179 |
| 64 | 64 | 0.223 |
| 65 | 65 | 0.347 |
| 66 | 66 | 0.385 |
| 67 | 67 | 0.346 |
| 68 | 68 | 0.336 |
| 69 | 69 | 0.462 |
| 7 | 7 | 0.0555 |
| 70 | 70 | 0.0263 |
| 71 | 71 | 0.00764 |
| 72 | 72 | 0.523 |
| 73 | 73 | 0.0573 |
| 74 | 74 | 0.49 |
| 75 | 75 | 0.0248 |
| 76 | 76 | 0.286 |
| 77 | 77 | 0.302 |
| 78 | 78 | 0.00261 |
| 79 | 79 | 0.22 |
| 8 | 8 | 0.0463 |
| 80 | 80 | 0.929 |
| 81 | 81 | 0.495 |
| 82 | 82 | 0.44 |
| 83 | 83 | 0.229 |
| 84 | 84 | 0.7 |
| 85 | 85 | 0.275 |
| 86 | 86 | 0.22 |
| 87 | 87 | 0.0291 |
| 88 | 88 | 0.864 |
| 89 | 89 | 0.604 |
| 9 | 9 | 0.642 |
| 90 | 90 | 0.0188 |
| 91 | 91 | 0.31 |
| 92 | 92 | 0.4 |
| 93 | 93 | 0.855 |
| 94 | 94 | 0.0554 |
| 95 | 95 | 0.0376 |
| 96 | 96 | 0.898 |
| 97 | 97 | 0.807 |
| 98 | 98 | 0.203 |
| 99 | 99 | 0.981 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10643
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002902 (occipital pole)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0009899 (pole of cerebral hemisphere)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010036 (human occipital pole - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
