FF:10039-101F3: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	insula, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10646
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	insula
dev stage	20-68 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3040372
catalog number	Cat:636568
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005167

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10646		CAGE		DRX008669		DRR009541

Accession ID Hg19

Library id		BAM		CTSS
CNhs10646		DRZ000966		DRZ002351

Accession ID Hg38

Library id		BAM		CTSS
CNhs10646		DRZ012316		DRZ013701

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.412
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0833
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.347
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0498
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.154
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.543
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0256
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.154
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0256
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.115
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.154
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.0727
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0289
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.133
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.256
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0498
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0256
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0587
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.172
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.136
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0256
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.906
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0256
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0751
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.469
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0256
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0498
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.673
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.135
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0256
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.101
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.432
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0256
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.596
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.274
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.539
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.369
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.506
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0256
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.105
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.135
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0.0128
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0256
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.768
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0945
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.267
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.35
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0498
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.172
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0256
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10646

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0104
MA0003.1	MA0003.1	0.372
MA0004.1	MA0004.1	0.479
MA0006.1	MA0006.1	0.353
MA0007.1	MA0007.1	0.157
MA0009.1	MA0009.1	0.221
MA0014.1	MA0014.1	0.651
MA0017.1	MA0017.1	0.00288
MA0018.2	MA0018.2	0.0643
MA0019.1	MA0019.1	0.915
MA0024.1	MA0024.1	0.916
MA0025.1	MA0025.1	0.22
MA0027.1	MA0027.1	0.408
MA0028.1	MA0028.1	0.111
MA0029.1	MA0029.1	0.0788
MA0030.1	MA0030.1	0.236
MA0031.1	MA0031.1	0.884
MA0035.2	MA0035.2	0.124
MA0038.1	MA0038.1	0.0375
MA0039.2	MA0039.2	0.261
MA0040.1	MA0040.1	0.54
MA0041.1	MA0041.1	0.208
MA0042.1	MA0042.1	0.643
MA0043.1	MA0043.1	0.308
MA0046.1	MA0046.1	0.0905
MA0047.2	MA0047.2	0.0784
MA0048.1	MA0048.1	0.112
MA0050.1	MA0050.1	0.00805
MA0051.1	MA0051.1	0.114
MA0052.1	MA0052.1	0.0603
MA0055.1	MA0055.1	0.00346
MA0057.1	MA0057.1	0.925
MA0058.1	MA0058.1	0.414
MA0059.1	MA0059.1	0.077
MA0060.1	MA0060.1	0.228
MA0061.1	MA0061.1	0.00979
MA0062.2	MA0062.2	0.0296
MA0065.2	MA0065.2	4.07482e-4
MA0066.1	MA0066.1	0.0239
MA0067.1	MA0067.1	0.716
MA0068.1	MA0068.1	0.326
MA0069.1	MA0069.1	0.385
MA0070.1	MA0070.1	0.0729
MA0071.1	MA0071.1	0.0318
MA0072.1	MA0072.1	0.507
MA0073.1	MA0073.1	0.403
MA0074.1	MA0074.1	0.172
MA0076.1	MA0076.1	0.294
MA0077.1	MA0077.1	0.294
MA0078.1	MA0078.1	0.761
MA0079.2	MA0079.2	0.386
MA0080.2	MA0080.2	4.64257e-8
MA0081.1	MA0081.1	0.0737
MA0083.1	MA0083.1	0.146
MA0084.1	MA0084.1	0.673
MA0087.1	MA0087.1	0.407
MA0088.1	MA0088.1	0.149
MA0090.1	MA0090.1	0.237
MA0091.1	MA0091.1	0.481
MA0092.1	MA0092.1	0.374
MA0093.1	MA0093.1	0.504
MA0099.2	MA0099.2	2.38054e-10
MA0100.1	MA0100.1	0.656
MA0101.1	MA0101.1	0.00644
MA0102.2	MA0102.2	0.245
MA0103.1	MA0103.1	0.241
MA0104.2	MA0104.2	0.46
MA0105.1	MA0105.1	6.40256e-4
MA0106.1	MA0106.1	0.0339
MA0107.1	MA0107.1	0.01
MA0108.2	MA0108.2	0.398
MA0111.1	MA0111.1	0.431
MA0112.2	MA0112.2	8.54365e-4
MA0113.1	MA0113.1	0.236
MA0114.1	MA0114.1	0.00294
MA0115.1	MA0115.1	0.27
MA0116.1	MA0116.1	0.0035
MA0117.1	MA0117.1	0.955
MA0119.1	MA0119.1	0.0458
MA0122.1	MA0122.1	0.885
MA0124.1	MA0124.1	0.696
MA0125.1	MA0125.1	0.199
MA0131.1	MA0131.1	0.953
MA0135.1	MA0135.1	0.00505
MA0136.1	MA0136.1	1.64938e-9
MA0137.2	MA0137.2	0.303
MA0138.2	MA0138.2	0.167
MA0139.1	MA0139.1	0.385
MA0140.1	MA0140.1	0.00705
MA0141.1	MA0141.1	0.00871
MA0142.1	MA0142.1	0.893
MA0143.1	MA0143.1	0.992
MA0144.1	MA0144.1	0.241
MA0145.1	MA0145.1	0.227
MA0146.1	MA0146.1	0.0114
MA0147.1	MA0147.1	0.335
MA0148.1	MA0148.1	0.0579
MA0149.1	MA0149.1	0.0149
MA0150.1	MA0150.1	0.00229
MA0152.1	MA0152.1	0.893
MA0153.1	MA0153.1	0.394
MA0154.1	MA0154.1	0.037
MA0155.1	MA0155.1	0.661
MA0156.1	MA0156.1	4.3166e-5
MA0157.1	MA0157.1	0.6
MA0159.1	MA0159.1	0.00449
MA0160.1	MA0160.1	0.0291
MA0162.1	MA0162.1	0.104
MA0163.1	MA0163.1	3.92487e-6
MA0164.1	MA0164.1	0.747
MA0258.1	MA0258.1	0.00949
MA0259.1	MA0259.1	0.774

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10646

Novel motif	Logo	P-value
1	1	0.0313
10	10	0.0267
100	100	0.268
101	101	0.77
102	102	0.746
103	103	0.176
104	104	0.15
105	105	0.379
106	106	0.0516
107	107	0.119
108	108	0.849
109	109	0.00851
11	11	0.0142
110	110	0.0453
111	111	0.0648
112	112	0.282
113	113	0.691
114	114	0.0734
115	115	0.835
116	116	0.175
117	117	0.0095
118	118	0.093
119	119	0.0848
12	12	0.83
120	120	0.135
121	121	0.74
122	122	0.535
123	123	0.628
124	124	0.0537
125	125	0.15
126	126	0.0307
127	127	0.457
128	128	0.16
129	129	0.496
13	13	0.00151
130	130	0.524
131	131	0.0895
132	132	0.734
133	133	0.00281
134	134	0.259
135	135	0.231
136	136	0.00884
137	137	0.78
138	138	0.895
139	139	0.061
14	14	0.89
140	140	0.171
141	141	0.227
142	142	0.892
143	143	0.0126
144	144	0.837
145	145	0.087
146	146	0.63
147	147	0.833
148	148	0.107
149	149	0.3
15	15	0.0725
150	150	0.168
151	151	0.613
152	152	0.126
153	153	0.8
154	154	0.591
155	155	0.455
156	156	0.387
157	157	0.447
158	158	0.848
159	159	0.0801
16	16	0.0719
160	160	0.192
161	161	0.17
162	162	0.947
163	163	0.861
164	164	0.0182
165	165	0.0248
166	166	0.884
167	167	0.289
168	168	0.582
169	169	0.00726
17	17	0.155
18	18	0.2
19	19	0.191
2	2	0.972
20	20	0.0983
21	21	0.088
22	22	0.237
23	23	0.416
24	24	0.108
25	25	0.5
26	26	1.59508e-4
27	27	0.921
28	28	0.658
29	29	0.0111
3	3	0.0249
30	30	0.627
31	31	0.85
32	32	0.0298
33	33	0.0747
34	34	0.794
35	35	0.462
36	36	0.098
37	37	0.0353
38	38	0.307
39	39	0.24
4	4	0.978
40	40	0.0492
41	41	0.429
42	42	0.169
43	43	0.106
44	44	0.066
45	45	0.801
46	46	0.0581
47	47	0.0535
48	48	0.0479
49	49	0.125
5	5	0.43
50	50	0.355
51	51	0.513
52	52	0.625
53	53	0.905
54	54	0.461
55	55	0.396
56	56	0.47
57	57	0.237
58	58	0.303
59	59	0.133
6	6	0.547
60	60	0.0718
61	61	0.0591
62	62	0.175
63	63	0.148
64	64	0.2
65	65	0.277
66	66	0.301
67	67	0.327
68	68	0.303
69	69	0.368
7	7	0.0586
70	70	0.0151
71	71	0.0109
72	72	0.471
73	73	0.0432
74	74	0.607
75	75	0.0294
76	76	0.366
77	77	0.208
78	78	0.00309
79	79	0.176
8	8	0.0538
80	80	0.922
81	81	0.55
82	82	0.477
83	83	0.166
84	84	0.743
85	85	0.198
86	86	0.208
87	87	0.00614
88	88	0.851
89	89	0.54
9	9	0.54
90	90	0.0277
91	91	0.422
92	92	0.443
93	93	0.61
94	94	0.0685
95	95	0.0261
96	96	0.955
97	97	0.798
98	98	0.213
99	99	0.711

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10646

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010039 human insula - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002022 (insula)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010039 (human insula - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005167
+|accession_numbers=CAGE;DRX008669;DRR009541;DRZ000966;DRZ002351;DRZ012316;DRZ013701
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002022,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.49!308.36!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.35!222.04!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.52!OLIG1;;chr17:53342311..53342400,+!p1@HLF!2.10!141.49!HLF;;chr9:77112244..77112262,+!p1@RORB!2.01!112.63!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.01!100.78!SOX10;;chr9:114287433..114287513,+!p1@ZNF483!1.98!236.98!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.97!92.89!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.91!79.46!HOPX;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.57!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.88!75.21!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.87!72.47!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!71.75!NEUROD2;;chr5:88178983..88179012,-!p1@MEF2C!1.82!474.45!MEF2C;;chr11:61520075..61520136,+!p1@C11orf9!1.82!132.92!C11orf9;;chr2:162272785..162272836,+!p1@TBR1!1.82!64.76!TBR1;;chr2:166326200..166326216,+!p1@CSRNP3!1.80!88.82!CSRNP3;;chr2:95963052..95963106,+!p1@KCNIP3!1.76!55.95!KCNIP3;;chr3:181429704..181429722,+!p1@SOX2!1.74!53.95!SOX2;;chr10:64134120..64134183,+!p1@ZNF365!1.73!63.30!ZNF365;;chr15:80735246..80735321,+!p3@ARNT2!1.72!51.58!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.76!PRDM8;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.99!ZMAT4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!74.05!ZEB2;;chr7:31380292..31380351,-!p1@NEUROD6!1.62!40.28!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!36.94!POU3F3;;chr5:88179017..88179046,-!p2@MEF2C!1.57!141.24!MEF2C;;chr18:53070846..53070902,-!p6@TCF4!1.57!35.84!TCF4;;chrX:25034067..25034088,-!p1@ARX!1.55!34.08!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.54!45.38!BHLHE41;;chr14:29234581..29234601,+!p2@FOXG1!1.54!33.35!FOXG1;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.04!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!31.95!TEF;;chr14:29236269..29236285,+!p3@FOXG1!1.51!31.35!FOXG1;;chr21:34442540..34442560,+!p2@OLIG1!1.51!31.35!OLIG1;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.29!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.50!30.50!NFIX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.49!30.25!SMARCE1;;chr11:125034640..125034655,+!p1@PKNOX2!1.49!30.07!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.47!28.55!ZIM2;;chr2:60781201..60781258,-!p3@BCL11A!1.47!28.25!BCL11A;;chr1:2461692..2461710,-!p1@HES5!1.45!27.16!HES5;;chr8:53322304..53322340,-!p1@ST18!1.45!27.03!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.45!26.97!ZNF238;;chr14:33403881..33403924,+!p1@NPAS3!1.44!26.61!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!1.44!26.61!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.43!35.84!TUB;;chr4:57522166..57522260,-!p2@HOPX!1.42!28.92!HOPX;;chr2:95963120..95963136,+!p2@KCNIP3!1.42!25.09!KCNIP3;;chr2:162272889..162272915,+!p2@TBR1!1.40!23.94!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.37!22.54!RFX4;;chr1:151032860..151032918,+!p1@MLLT11!1.34!238.69!MLLT11;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.78!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.33!20.59!SOX8;;chrX:85969626..85969664,+!p1@DACH2!1.33!20.41!DACH2;;chr3:24536253..24536328,-!p1@THRB!1.31!35.90!THRB;;chr19:38720294..38720348,-!p1@DPF1!1.31!24.06!DPF1;;chr12:54779511..54779577,-!p5@ZNF385A!1.31!19.32!ZNF385A;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.95!KDM5D;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.59!ZNF727;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.33!ZBTB16;;chr2:166428839..166428859,+!p2@CSRNP3!1.27!17.50!CSRNP3;;chr19:38085768..38085821,+!p1@ZNF540!1.26!25.82!ZNF540;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.87!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.26!17.37!RFX4;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.07!JARID2;;chr9:126774018..126774055,+!p1@LHX2!1.25!16.77!LHX2;;chr6:19837592..19837621,+!p1@ID4!1.24!99.02!ID4;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.87!EGR3;;chrX:118739835..118739862,-!p1@NKRF!1.24!18.16!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.24!16.22!ZSCAN1;;chr17:7492684..7492778,-!p2@SOX15!1.23!33.41!SOX15;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.80!ZNF488;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.19!EGR4;;chr11:125034605..125034636,+!p2@PKNOX2!1.20!14.88!PKNOX2;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.52!HOPX;;chr2:42721205..42721307,+!p4@MTA3!1.19!14.34!MTA3;;chr5:92920256..92920282,+!p7@NR2F1!1.18!17.01!NR2F1;;chr10:64133862..64133884,+!p4@ZNF365!1.18!14.28!ZNF365;;chr2:2335109..2335134,-!p2@MYT1L!1.18!14.15!MYT1L;;chr3:141105705..141105770,+!p4@ZBTB38!1.17!16.71!ZBTB38;;chr12:24102576..24102623,-!p2@SOX5!1.17!13.91!SOX5;;chr10:134599649..134599653,-!p1@NKX6-2!1.16!13.49!NKX6-2;;chr11:31832658..31832681,-!p1@PAX6!1.16!13.30!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!47.38!BHLHE41;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.07!SATB2;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.63!MLLT11;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.00!ZNF385D;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.76!POU3F3;;chr1:8585945..8586056,-!p3@RERE!1.13!41.67!RERE;;chr5:92919375..92919438,+!p6@NR2F1!1.13!13.61!NR2F1;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.58!EMX2;;chr2:162272716..162272753,+!p3@TBR1!1.12!12.21!TBR1;;chrX:118739782..118739829,-!p2@NKRF!1.12!12.21!NKRF;;chr3:24536332..24536358,-!p2@THRB!1.12!12.15!THRB;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.97!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.11!11.79!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.11!11.79!ST18;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.01!NFIX;;chr6:126112039..126112062,+!p8@NCOA7!1.10!13.91!NCOA7;;chr19:46800289..46800327,+!p2@HIF3A!1.10!11.54!HIF3A;;chrY:21906761..21906810,-!p2@KDM5D!1.10!11.48!KDM5D;;chr7:150974206..150974255,-!p1@SMARCD3!1.09!70.29!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.77!ZNF385A;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.75!RUNX1T1;;chr2:172949484..172949522,+!p1@DLX1!1.07!10.69!DLX1;;chr2:157189180..157189290,-!p1@NR4A2!1.06!55.77!NR4A2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.12!TUB;;chr2:166428861..166428883,+!p3@CSRNP3!1.06!10.45!CSRNP3;;chr7:73038839..73038862,-!p1@MLXIPL!1.06!10.39!MLXIPL;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.92!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.04!19.44!MEF2C;;chr6:143266185..143266238,-!p2@HIVEP2!1.04!13.91!HIVEP2;;chr17:70117153..70117174,+!p1@SOX9!1.03!101.27!SOX9;;chr2:180726291..180726311,-!p1@ZNF385B!1.03!9.72!ZNF385B;;chr5:138609489..138609542,+!p8@MATR3!1.03!9.66!MATR3;;chr18:53070913..53070933,-!p16@TCF4!1.03!9.60!TCF4;;chr17:38219209..38219230,+!p1@THRA!1.02!125.93!THRA;;chr15:31658288..31658338,+!p4@KLF13!1.02!9.36!KLF13;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.45!SOX18;;chr9:77112225..77112238,+!p2@RORB!1.01!9.23!RORB;;chr2:2328725..2328739,-!p5@MYT1L!1.01!9.23!MYT1L;;chr17:38256822..38256851,-!p1@NR1D1!1.00!71.62!NR1D1;;chr2:74229812..74229867,+!p1@TET3!1.00!23.08!TET3;;chr2:145275982..145276003,-!p7@ZEB2!1.00!9.05!ZEB2;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.87!LHX2;;chr9:124991204..124991246,-!p1@LHX6!0.99!8.81!LHX6;;chr14:29234870..29234930,+!p7@FOXG1!0.99!8.81!FOXG1;;chr11:125034586..125034604,+!p3@PKNOX2!0.99!8.75!PKNOX2;;chr22:41777927..41777971,+!p1@TEF!0.98!73.51!TEF;;chr20:42136308..42136358,+!p2@L3MBTL1!0.98!11.42!L3MBTL;;chr2:2330039..2330072,-!p6@MYT1L!0.98!8.63!MYT1L;;chr11:31832862..31832884,-!p2@PAX6!0.98!8.63!PAX6;;chr19:49140609..49140643,-!p1@DBP!0.97!48.66!DBP;;chr8:22550530..22550609,-!p2@EGR3!0.97!8.32!EGR3;;chr19:13135566..13135577,+!p9@NFIX!0.97!8.32!NFIX;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.26!ZNF536;;chr21:39870339..39870443,-!p1@ERG!0.97!8.26!ERG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.26!RUNX1T1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.17!TCF4;;chr2:2335070..2335098,-!p4@MYT1L!0.96!8.20!MYT1L;;chr4:57522513..57522548,-!p4@HOPX!0.96!8.20!HOPX;;chr2:162273241..162273253,+!p4@TBR1!0.96!8.08!TBR1;;chr5:71803177..71803255,-!p1@ZNF366!0.96!8.08!ZNF366;;chr11:8040739..8040815,+!p4@TUB!0.96!8.08!TUB;;chr19:13135731..13135787,+!p10@NFIX!0.96!8.08!NFIX;;chr1:42384343..42384380,-!p4@HIVEP3!0.96!8.02!HIVEP3;;chr1:61548069..61548102,+!p3@NFIA!0.95!19.62!NFIA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.95!17.37!ZNF395;;chr19:57183114..57183145,-!p1@ZNF835!0.95!8.99!ZNF835;;chr9:126773880..126773895,+!p2@LHX2!0.95!7.84!LHX2;;chr15:31618903..31618962,+!p3@KLF13!0.94!21.75!KLF13;;chr5:178368186..178368238,+!p1@ZNF454!0.94!14.22!ZNF454;;chr3:33482052..33482116,-!p2@UBP1!0.94!12.03!UBP1;;chr8:80679993..80680011,-!p1@HEY1!0.94!11.48!HEY1;;chr2:162273196..162273210,+!p5@TBR1!0.94!7.78!TBR1;;chr16:51185318..51185348,-!p2@SALL1!0.94!7.78!SALL1;;chr8:30890810..30890880,-!p1@PURG!0.94!7.65!PURG;;chr10:64133910..64133925,+!p5@ZNF365!0.94!7.65!ZNF365;;chr19:47922750..47922795,-!p1@MEIS3!0.93!12.51!MEIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.93!9.48!MLLT11;;chr3:126076242..126076257,-!p1@KLF15!0.93!9.48!KLF15;;chr2:2328299..2328363,-!p3@MYT1L!0.93!7.59!MYT1L;;chrX:102000987..102001029,+!p3@BHLHB9!0.93!7.53!BHLHB9;;chr16:51185172..51185197,-!p1@SALL1!0.93!7.47!SALL1;;chr8:145560111..145560165,-!p2@SCRT1!0.93!7.47!SCRT1;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.97!ZEB2;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.01!MLLT11;;chr14:33403648..33403710,+!p3@NPAS3!0.92!7.41!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.91!28.92!MAF;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.17!SALL2;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.54!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.91!8.44!NPAS3;;chr13:100634031..100634045,+!p1@ZIC2!0.91!7.17!ZIC2;;chr15:80696410..80696477,+!p6@ARNT2!0.91!7.17!ARNT2;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.11!OLIG1;;chr5:88179271..88179286,-!p7@MEF2C!0.91!7.05!MEF2C;;chr17:4890919..4890985,-!p1@CAMTA2!0.90!67.49!CAMTA2;;chr5:139487608..139487663,+!p3@PURA!0.90!15.43!PURA;;chr8:60031682..60031710,-!p2@TOX!0.90!11.54!TOX;;chr19:7580549..7580596,+!p3@ZNF358!0.90!6.99!ZNF358;;chr20:3388541..3388575,-!p2@C20orf194!0.89!27.88!C20orf194;;chr17:38219143..38219154,+!p2@THRA!0.89!25.21!THRA;;chr1:164528340..164528379,+!p4@PBX1!0.89!17.44!PBX1;;chr11:47400078..47400106,-!p1@SPI1!0.89!6.80!SP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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10039-101F3
 |is_a=EFO:0002091;;FF:0010039
 |is_obsolete=
+|library_id=CNhs10646
+|library_id_phase_based=2:CNhs10646
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10039
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10039
 |name=insula, adult, pool1
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10646,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636568
@@ Line 60: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=REST:4.55264096162;NHLH1,2:4.45367622929;EGR1..3:4.44347393155;AHR_ARNT_ARNT2:4.17517135414;PRRX1,2:4.05057661225;MYFfamily:3.83021369214;ZFP161:3.76554430806;MTE{core}:3.70157521518;ATF2:3.67301252527;MED-1{core}:3.65727115447;ZBTB6:3.55660337704;PAX5:3.54727656467;RREB1:3.47861349929;RFX1:3.35514406066;TFAP2B:3.35508220906;CUX2:3.23190364929;MTF1:3.20273484515;GTF2I:3.01275068352;HIC1:3.00469515651;MZF1:2.94160733443;SMAD1..7,9:2.79602159473;DBP:2.76582130862;HOXA9_MEIS1:2.72703696336;PRDM1:2.59588344649;BREu{core}:2.59115432333;OCT4_SOX2{dimer}:2.48412377263;TGIF1:2.4828412589;POU5F1:2.47567574539;SOX2:2.46135937351;NKX2-3_NKX2-5:2.42482870529;NANOG:2.41389372334;PATZ1:2.35609013217;SOX5:2.33610935443;MAZ:2.30567697419;JUN:2.27872357201;LMO2:2.27797384297;POU6F1:2.25119962198;RFX2..5_RFXANK_RFXAP:2.23979648603;SOX{8,9,10}:2.2339570541;FOXM1:2.23390352391;GFI1B:2.19589140236;NKX3-2:2.19563369789;MAFB:2.10284138789;GCM1,2:1.97127501997;TFDP1:1.89967126368;NRF1:1.89602905949;PAX6:1.85823895188;NFIX:1.80227971107;SOX17:1.77325237453;EBF1:1.7203339069;LEF1_TCF7_TCF7L1,2:1.69162502121;MYOD1:1.56630501323;ARID5B:1.56393145531;POU3F1..4:1.55143301756;HMGA1,2:1.51368232847;FOX{F1,F2,J1}:1.48189783154;GTF2A1,2:1.46525661493;RORA:1.42477667797;EP300:1.41539861079;RBPJ:1.41275178817;ZNF238:1.38618932004;ESRRA:1.37352791397;CDC5L:1.37293483261;HAND1,2:1.35543355057;NFIL3:1.33754612472;GATA4:1.33739818969;ADNP_IRX_SIX_ZHX:1.32461584163;HBP1_HMGB_SSRP1_UBTF:1.31340382399;SP1:1.30221849189;KLF4:1.29941649347;HOX{A4,D4}:1.2549611617;ZNF423:1.20309412726;XBP1:1.11837224814;SREBF1,2:1.09670318212;T:1.06365268102;MEF2{A,B,C,D}:1.05827707365;CREB1:0.98250526831;ZNF143:0.944252319915;TBX4,5:0.891639350186;TFAP2{A,C}:0.841633309653;YY1:0.840051797347;HMX1:0.838942002396;FOXN1:0.823604222471;ZEB1:0.787712735269;CRX:0.75615139821;TLX2:0.713650050244;SPZ1:0.687338356182;PBX1:0.658340513878;GFI1:0.627197078644;FOXQ1:0.607889999132;FOXP1:0.607511922718;TLX1..3_NFIC{dimer}:0.600031369107;ZIC1..3:0.583359310448;FOXP3:0.575740347158;ALX1:0.566997699386;XCPE1{core}:0.552654509135;bHLH_family:0.53853258253;STAT1,3:0.511164458235;ATF5_CREB3:0.478801359823;ATF4:0.414416494896;GZF1:0.413994587758;NKX6-1,2:0.372067473095;FOX{D1,D2}:0.363460131389;ZNF384:0.360406096812;BPTF:0.353183511846;PAX3,7:0.266338669077;MYBL2:0.234173563489;NANOG{mouse}:0.231444254727;POU1F1:0.176150153239;PAX2:0.167334347392;VSX1,2:0.144030673639;ONECUT1,2:0.118206205912;NR3C1:0.0862384340001;AR:0.0764920053552;LHX3,4:0.0254404106532;NFY{A,B,C}:0.0149099261113;IKZF1:0.0037735038623;IRF7:-0.00781408510147;FOX{I1,J2}:-0.00951492480427;TEF:-0.0351203645297;ZNF148:-0.0376829261967;PAX1,9:-0.049387151959;NFE2L2:-0.0511645473513;TFAP4:-0.0814729365852;SNAI1..3:-0.128613309795;FOXA2:-0.192166424481;PAX4:-0.207430533373;TOPORS:-0.276013537126;IKZF2:-0.292038152452;PDX1:-0.30559844401;TAL1_TCF{3,4,12}:-0.336464107794;NFATC1..3:-0.345565942753;GATA6:-0.390467927881;HOX{A6,A7,B6,B7}:-0.401356557001;NFE2:-0.422407390211;NR5A1,2:-0.451474268344;SPI1:-0.523626957764;NFE2L1:-0.529008012722;HSF1,2:-0.529964004652;FOXD3:-0.551920299372;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.602752721246;IRF1,2:-0.627440882787;DMAP1_NCOR{1,2}_SMARC:-0.630039647191;CEBPA,B_DDIT3:-0.632408365865;SPIB:-0.639850864058;GLI1..3:-0.651771169482;NR1H4:-0.665726817595;TFCP2:-0.669439476622;UFEwm:-0.680564800647;FOXL1:-0.697579700743;ETS1,2:-0.715026316179;ATF6:-0.718207895291;FOSL2:-0.739769622503;ESR1:-0.74041527486;STAT2,4,6:-0.765274887831;PAX8:-0.774052074187;FOXO1,3,4:-0.828313233967;HNF1A:-0.860444714299;TP53:-0.870951806603;BACH2:-0.913330090696;FOS_FOS{B,L1}_JUN{B,D}:-0.949910331352;TEAD1:-0.966207688054;ELK1,4_GABP{A,B1}:-0.976628746412;HIF1A:-1.01181744774;RUNX1..3:-1.10942947207;TBP:-1.12658283369;HNF4A_NR2F1,2:-1.1455758597;SRF:-1.16234201581;PPARG:-1.21476706433;NFKB1_REL_RELA:-1.23036062838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.29191703811;HLF:-1.31457652256;E2F1..5:-1.33446161638;POU2F1..3:-1.37314176728;MYB:-1.41805232556;NKX3-1:-1.42397023074;RXR{A,B,G}:-1.46439303956;STAT5{A,B}:-1.6235061593;PITX1..3:-1.63212067295;ELF1,2,4:-1.6440112727;RXRA_VDR{dimer}:-1.6666062477;HES1:-1.69578600154;ZBTB16:-1.69757669796;NKX2-2,8:-1.70155883096;ALX4:-1.91442399913;EN1,2:-1.93447129406;EVI1:-2.21497844881;HOX{A5,B5}:-2.3352263681;NKX2-1,4:-2.3652813881;AIRE:-2.54107337946;CDX1,2,4:-2.75207925876;NR6A1:-3.4036621706
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10039-101F3;search_select_hide=table117:FF:10039-101F3
 }}

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FF:10039-101F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0