FF:10040-101F4: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	frontal lobe, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10647
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	frontal lobe
dev stage	32-61 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8121115A
catalog number	Cat:636563
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005272

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10647		CAGE		DRX008656		DRR009528

Accession ID Hg19

Library id		BAM		CTSS
CNhs10647		DRZ000953		DRZ002338

Accession ID Hg38

Library id		BAM		CTSS
CNhs10647		DRZ012303		DRZ013688

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.39
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.304
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0518
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.15
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.578
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0267
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.119
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0267
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.119
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.178
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.0755
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0466
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.207
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0267
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0267
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.14
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.171
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0267
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.934
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0267
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0767
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.507
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0267
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0518
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.692
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0171
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.213
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0854
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.379
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0267
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.438
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.29
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.506
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.428
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.664
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0267
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.14
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.119
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0267
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0392
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.755
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.098
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.159
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.401
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0518
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.276
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0267
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10647

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0101
MA0003.1	MA0003.1	0.347
MA0004.1	MA0004.1	0.435
MA0006.1	MA0006.1	0.336
MA0007.1	MA0007.1	0.164
MA0009.1	MA0009.1	0.147
MA0014.1	MA0014.1	0.655
MA0017.1	MA0017.1	0.0029
MA0018.2	MA0018.2	0.0696
MA0019.1	MA0019.1	0.942
MA0024.1	MA0024.1	0.956
MA0025.1	MA0025.1	0.269
MA0027.1	MA0027.1	0.533
MA0028.1	MA0028.1	0.152
MA0029.1	MA0029.1	0.0608
MA0030.1	MA0030.1	0.245
MA0031.1	MA0031.1	0.981
MA0035.2	MA0035.2	0.0752
MA0038.1	MA0038.1	0.0617
MA0039.2	MA0039.2	0.209
MA0040.1	MA0040.1	0.585
MA0041.1	MA0041.1	0.544
MA0042.1	MA0042.1	0.705
MA0043.1	MA0043.1	0.38
MA0046.1	MA0046.1	0.0365
MA0047.2	MA0047.2	0.0833
MA0048.1	MA0048.1	0.12
MA0050.1	MA0050.1	0.01
MA0051.1	MA0051.1	0.139
MA0052.1	MA0052.1	0.127
MA0055.1	MA0055.1	0.00352
MA0057.1	MA0057.1	0.91
MA0058.1	MA0058.1	0.377
MA0059.1	MA0059.1	0.0781
MA0060.1	MA0060.1	0.312
MA0061.1	MA0061.1	0.00927
MA0062.2	MA0062.2	0.0374
MA0065.2	MA0065.2	2.96488e-4
MA0066.1	MA0066.1	0.0216
MA0067.1	MA0067.1	0.699
MA0068.1	MA0068.1	0.582
MA0069.1	MA0069.1	0.369
MA0070.1	MA0070.1	0.254
MA0071.1	MA0071.1	0.023
MA0072.1	MA0072.1	0.383
MA0073.1	MA0073.1	0.325
MA0074.1	MA0074.1	0.171
MA0076.1	MA0076.1	0.371
MA0077.1	MA0077.1	0.216
MA0078.1	MA0078.1	0.744
MA0079.2	MA0079.2	0.487
MA0080.2	MA0080.2	1.767e-8
MA0081.1	MA0081.1	0.0665
MA0083.1	MA0083.1	0.0709
MA0084.1	MA0084.1	0.713
MA0087.1	MA0087.1	0.417
MA0088.1	MA0088.1	0.165
MA0090.1	MA0090.1	0.269
MA0091.1	MA0091.1	0.434
MA0092.1	MA0092.1	0.363
MA0093.1	MA0093.1	0.459
MA0099.2	MA0099.2	2.83501e-12
MA0100.1	MA0100.1	0.717
MA0101.1	MA0101.1	0.00484
MA0102.2	MA0102.2	0.174
MA0103.1	MA0103.1	0.198
MA0104.2	MA0104.2	0.448
MA0105.1	MA0105.1	7.91022e-4
MA0106.1	MA0106.1	0.0304
MA0107.1	MA0107.1	0.00796
MA0108.2	MA0108.2	0.954
MA0111.1	MA0111.1	0.46
MA0112.2	MA0112.2	8.39059e-4
MA0113.1	MA0113.1	0.238
MA0114.1	MA0114.1	0.00286
MA0115.1	MA0115.1	0.304
MA0116.1	MA0116.1	0.00433
MA0117.1	MA0117.1	0.976
MA0119.1	MA0119.1	0.052
MA0122.1	MA0122.1	0.785
MA0124.1	MA0124.1	0.696
MA0125.1	MA0125.1	0.217
MA0131.1	MA0131.1	0.992
MA0135.1	MA0135.1	0.0261
MA0136.1	MA0136.1	2.71832e-10
MA0137.2	MA0137.2	0.47
MA0138.2	MA0138.2	0.227
MA0139.1	MA0139.1	0.421
MA0140.1	MA0140.1	0.00926
MA0141.1	MA0141.1	0.00706
MA0142.1	MA0142.1	0.994
MA0143.1	MA0143.1	0.973
MA0144.1	MA0144.1	0.26
MA0145.1	MA0145.1	0.208
MA0146.1	MA0146.1	0.00879
MA0147.1	MA0147.1	0.32
MA0148.1	MA0148.1	0.109
MA0149.1	MA0149.1	0.018
MA0150.1	MA0150.1	0.00128
MA0152.1	MA0152.1	0.91
MA0153.1	MA0153.1	0.242
MA0154.1	MA0154.1	0.0388
MA0155.1	MA0155.1	0.571
MA0156.1	MA0156.1	1.94605e-5
MA0157.1	MA0157.1	0.676
MA0159.1	MA0159.1	0.0047
MA0160.1	MA0160.1	0.025
MA0162.1	MA0162.1	0.115
MA0163.1	MA0163.1	7.82072e-6
MA0164.1	MA0164.1	0.696
MA0258.1	MA0258.1	0.00891
MA0259.1	MA0259.1	0.803

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10647

Novel motif	Logo	P-value
1	1	0.0377
10	10	0.0335
100	100	0.3
101	101	0.674
102	102	0.781
103	103	0.219
104	104	0.136
105	105	0.299
106	106	0.0439
107	107	0.115
108	108	0.806
109	109	0.00725
11	11	0.0148
110	110	0.0462
111	111	0.0624
112	112	0.292
113	113	0.604
114	114	0.0936
115	115	0.89
116	116	0.148
117	117	0.0107
118	118	0.116
119	119	0.0942
12	12	0.684
120	120	0.162
121	121	0.587
122	122	0.673
123	123	0.679
124	124	0.0379
125	125	0.215
126	126	0.0316
127	127	0.465
128	128	0.14
129	129	0.547
13	13	0.00151
130	130	0.475
131	131	0.0647
132	132	0.767
133	133	0.00497
134	134	0.303
135	135	0.193
136	136	0.00943
137	137	0.785
138	138	0.866
139	139	0.0742
14	14	0.846
140	140	0.0792
141	141	0.273
142	142	0.764
143	143	0.0194
144	144	0.891
145	145	0.0842
146	146	0.586
147	147	0.936
148	148	0.154
149	149	0.284
15	15	0.0739
150	150	0.173
151	151	0.622
152	152	0.114
153	153	0.775
154	154	0.571
155	155	0.462
156	156	0.428
157	157	0.433
158	158	0.605
159	159	0.0412
16	16	0.0722
160	160	0.185
161	161	0.198
162	162	0.985
163	163	0.776
164	164	0.0205
165	165	0.0403
166	166	0.847
167	167	0.422
168	168	0.672
169	169	0.00743
17	17	0.147
18	18	0.19
19	19	0.182
2	2	0.947
20	20	0.104
21	21	0.07
22	22	0.219
23	23	0.388
24	24	0.1
25	25	0.48
26	26	1.14024e-4
27	27	0.916
28	28	0.691
29	29	0.0139
3	3	0.0314
30	30	0.686
31	31	0.885
32	32	0.0205
33	33	0.0735
34	34	0.706
35	35	0.498
36	36	0.115
37	37	0.0383
38	38	0.302
39	39	0.218
4	4	0.866
40	40	0.0483
41	41	0.385
42	42	0.206
43	43	0.102
44	44	0.0754
45	45	0.759
46	46	0.0592
47	47	0.0614
48	48	0.0546
49	49	0.135
5	5	0.501
50	50	0.342
51	51	0.508
52	52	0.579
53	53	0.929
54	54	0.452
55	55	0.39
56	56	0.459
57	57	0.239
58	58	0.31
59	59	0.116
6	6	0.592
60	60	0.0705
61	61	0.0726
62	62	0.164
63	63	0.15
64	64	0.201
65	65	0.241
66	66	0.295
67	67	0.331
68	68	0.361
69	69	0.269
7	7	0.0618
70	70	0.0238
71	71	0.0113
72	72	0.484
73	73	0.04
74	74	0.767
75	75	0.033
76	76	0.438
77	77	0.186
78	78	0.00297
79	79	0.143
8	8	0.0491
80	80	0.912
81	81	0.559
82	82	0.461
83	83	0.162
84	84	0.638
85	85	0.184
86	86	0.209
87	87	0.00343
88	88	0.848
89	89	0.514
9	9	0.479
90	90	0.0523
91	91	0.458
92	92	0.438
93	93	0.714
94	94	0.0765
95	95	0.025
96	96	0.941
97	97	0.768
98	98	0.193
99	99	0.673

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10647

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010040 human frontal lobe - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010040 (human frontal lobe - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005272
+|accession_numbers=CAGE;DRX008656;DRR009528;DRZ000953;DRZ002338;DRZ012303;DRZ013688
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001870,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.47!296.99!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.38!237.10!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.33!213.48!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.09!121.49!SOX10;;chr9:114287433..114287513,+!p1@ZNF483!2.07!289.84!ZNF483;;chr9:77112244..77112262,+!p1@RORB!2.07!129.03!RORB;;chr17:53342311..53342400,+!p1@HLF!2.06!128.58!HLF;;chr4:57547454..57547469,-!p1@HOPX!1.96!90.03!HOPX;;chr21:34398234..34398250,+!p1@OLIG2!1.90!78.25!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.89!158.97!C11orf9;;chr5:88178983..88179012,-!p1@MEF2C!1.87!534.85!MEF2C;;chr2:2334997..2335053,-!p1@MYT1L!1.85!70.21!MYT1L;;chr2:166326200..166326216,+!p1@CSRNP3!1.84!99.08!CSRNP3;;chr10:64134120..64134183,+!p1@ZNF365!1.84!80.53!ZNF365;;chr15:80733570..80733659,+!p2@ARNT2!1.83!65.91!ARNT2;;chr14:29235961..29236008,+!p1@FOXG1!1.82!65.53!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.78!59.32!NEUROD2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.76!57.17!SMARCE1;;chr8:40755333..40755352,-!p1@ZMAT4!1.76!56.98!ZMAT4;;chr2:145277882..145277967,-!p3@ZEB2!1.74!90.72!ZEB2;;chr7:31380292..31380351,-!p1@NEUROD6!1.74!53.81!NEUROD6;;chr2:162272785..162272836,+!p1@TBR1!1.74!53.62!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.73!52.29!KCNIP3;;chr15:80735246..80735321,+!p3@ARNT2!1.71!50.21!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.71!49.83!SOX2;;chr8:53322304..53322340,-!p1@ST18!1.66!44.32!ST18;;chr18:53070846..53070902,-!p6@TCF4!1.64!42.99!TCF4;;chr4:81118647..81118666,+!p1@PRDM8!1.61!52.29!PRDM8;;chr21:34442540..34442560,+!p2@OLIG1!1.57!36.21!OLIG1;;chr5:88179017..88179046,-!p2@MEF2C!1.56!135.68!MEF2C;;chr19:13135582..13135600,+!p3@NFIX!1.56!35.20!NFIX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.63!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.54!45.33!BHLHE41;;chr19:13135386..13135435,+!p4@NFIX!1.54!34.00!NFIX;;chrX:25034067..25034088,-!p1@ARX!1.49!30.01!ARX;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.95!SOX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.46!27.86!PKNOX2;;chr14:29236269..29236285,+!p3@FOXG1!1.46!27.67!FOXG1;;chr2:95963120..95963136,+!p2@KCNIP3!1.46!27.54!KCNIP3;;chr19:57352109..57352153,-!p2@ZIM2!1.45!27.16!ZIM2;;chr15:80696703..80696754,+!p1@ARNT2!1.44!35.07!ARNT2;;chr14:29234581..29234601,+!p2@FOXG1!1.43!25.83!FOXG1;;chr2:166428839..166428859,+!p2@CSRNP3!1.42!25.51!CSRNP3;;chr16:1031762..1031781,+!p1@SOX8!1.42!25.45!SOX8;;chr22:41763452..41763466,+!p2@TEF!1.41!24.94!TEF;;chr2:60781201..60781258,-!p3@BCL11A!1.41!24.56!BCL11A;;chr14:33403881..33403924,+!p1@NPAS3!1.41!24.50!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.31!ZNF727;;chrX:85969626..85969664,+!p1@DACH2!1.40!23.93!DACH2;;chr14:58798013..58798071,+!p2@ARID4A!1.39!23.42!ARID4A;;chr19:38085768..38085821,+!p1@ZNF540!1.38!34.31!ZNF540;;chr4:57522166..57522260,-!p2@HOPX!1.38!26.46!HOPX;;chr1:244214577..244214593,+!p1@ZNF238!1.37!22.67!ZNF238;;chr11:113930425..113930471,+!p1@ZBTB16!1.36!31.66!ZBTB16;;chr3:24536253..24536328,-!p1@THRB!1.34!39.00!THRB;;chr1:151032860..151032918,+!p1@MLLT11!1.33!236.85!MLLT11;;chr11:8102846..8102892,+!p1@TUB!1.32!27.79!TUB;;chr2:162272889..162272915,+!p2@TBR1!1.29!18.61!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.29!18.42!RFX4;;chr12:54779511..54779577,-!p5@ZNF385A!1.29!18.30!ZNF385A;;chr19:38720294..38720348,-!p1@DPF1!1.27!22.10!DPF1;;chr8:53322347..53322378,-!p2@ST18!1.27!17.66!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.26!17.09!NKX6-2;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.61!PROX1;;chr6:15401104..15401166,+!p5@JARID2!1.25!16.84!JARID2;;chr10:64133862..64133884,+!p4@ZNF365!1.24!16.52!ZNF365;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.52!KDM5D;;chr6:19837592..19837621,+!p1@ID4!1.23!95.60!ID4;;chr10:48355030..48355090,+!p1@ZNF488!1.23!20.70!ZNF488;;chrX:118739835..118739862,-!p1@NKRF!1.23!17.60!NKRF;;chr19:46801639..46801699,+!p1@HIF3A!1.23!15.95!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!1.22!32.61!SOX15;;chr3:141105705..141105770,+!p4@ZBTB38!1.22!18.87!ZBTB38;;chr12:106976678..106976708,+!p2@RFX4!1.21!15.26!RFX4;;chr1:2461692..2461710,-!p1@HES5!1.21!15.07!HES5;;chr9:126774018..126774055,+!p1@LHX2!1.20!14.69!LHX2;;chr2:166428861..166428883,+!p3@CSRNP3!1.18!13.99!CSRNP3;;chr5:92920256..92920282,+!p7@NR2F1!1.17!16.90!NR2F1;;chr6:126112039..126112062,+!p8@NCOA7!1.17!16.52!NCOA7;;chr11:125034605..125034636,+!p2@PKNOX2!1.17!13.74!PKNOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.68!POU3F3;;chr2:145275982..145276003,-!p7@ZEB2!1.15!13.17!ZEB2;;chr2:42721205..42721307,+!p4@MTA3!1.15!13.11!MTA3;;chr10:31610110..31610159,+!p2@ZEB1!1.14!12.85!ZEB1;;chr3:21792682..21792720,-!p1@ZNF385D!1.13!12.54!ZNF385D;;chr3:24536332..24536358,-!p2@THRB!1.13!12.47!THRB;;chr8:145560371..145560449,-!p1@SCRT1!1.13!12.35!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.12!43.68!BHLHE41;;chr1:151032922..151032951,+!p2@MLLT11!1.12!20.32!MLLT11;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.93!ZNF385A;;chr2:2335109..2335134,-!p2@MYT1L!1.12!12.09!MYT1L;;chr8:22550982..22550999,-!p1@EGR3!1.11!33.81!EGR3;;chr19:13134772..13134822,+!p2@NFIX!1.11!17.41!NFIX;;chr4:57522598..57522664,-!p3@HOPX!1.11!12.03!HOPX;;chr9:77112225..77112238,+!p2@RORB!1.11!11.97!RORB;;chr14:58797974..58798011,+!p3@ARID4A!1.11!11.97!ARID4A;;chr18:53070913..53070933,-!p16@TCF4!1.10!11.65!TCF4;;chr5:138609489..138609542,+!p8@MATR3!1.10!11.52!MATR3;;chr19:58545454..58545498,+!p1@ZSCAN1!1.09!11.40!ZSCAN1;;chrX:118739782..118739829,-!p2@NKRF!1.09!11.27!NKRF;;chr10:119302232..119302265,+!p1@EMX2!1.08!10.95!EMX2;;chr19:30863271..30863338,+!p1@ZNF536!1.08!10.89!ZNF536;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.24!SOX18;;chr10:38265517..38265591,-!p1@ZNF25!1.06!40.58!ZNF25;;chr6:143266185..143266238,-!p2@HIVEP2!1.05!14.31!HIVEP2;;chr18:53068911..53068935,-!p4@TCF4!1.05!11.59!TCF4;;chr2:2335070..2335098,-!p4@MYT1L!1.05!10.32!MYT1L;;chr11:31832658..31832681,-!p1@PAX6!1.05!10.26!PAX6;;chr7:73038839..73038862,-!p1@MLXIPL!1.05!10.19!MLXIPL;;chr8:145560111..145560165,-!p2@SCRT1!1.05!10.19!SCRT1;;chr2:192015750..192015793,-!p2@STAT4!1.04!13.55!STAT4;;chr2:180726291..180726311,-!p1@ZNF385B!1.04!10.00!ZNF385B;;chr12:24102576..24102623,-!p2@SOX5!1.04!10.00!SOX5;;chr15:31658288..31658338,+!p4@KLF13!1.04!10.00!KLF13;;chr2:162272716..162272753,+!p3@TBR1!1.04!9.94!TBR1;;chr8:30890810..30890880,-!p1@PURG!1.04!9.88!PURG;;chr2:200323414..200323455,-!p1@SATB2!1.03!20.83!SATB2;;chr16:85932760..85932775,+!p1@IRF8!1.03!9.81!IRF8;;chr19:13135566..13135577,+!p9@NFIX!1.03!9.62!NFIX;;chr2:60780607..60780624,-!p2@BCL11A!1.02!29.69!BCL11A;;chrY:21906761..21906810,-!p2@KDM5D!1.02!9.50!KDM5D;;chr19:13135731..13135787,+!p10@NFIX!1.02!9.43!NFIX;;chr11:125034586..125034604,+!p3@PKNOX2!1.02!9.43!PKNOX2;;chr10:64133910..64133925,+!p5@ZNF365!1.01!9.31!ZNF365;;chr1:8585945..8586056,-!p3@RERE!1.00!30.52!RERE;;chr3:126076242..126076257,-!p1@KLF15!1.00!11.33!KLF15;;chr8:93107451..93107468,-!p2@RUNX1T1!1.00!8.99!RUNX1T1;;chr9:126773880..126773895,+!p2@LHX2!1.00!8.93!LHX2;;chr2:73520667..73520683,-!p1@EGR4!1.00!8.93!EGR4;;chr5:88179230..88179270,-!p4@MEF2C!0.99!17.35!MEF2C;;chr19:37998036..37998098,+!p2@ZNF793!0.99!11.08!ZNF793;;chr11:8102819..8102845,+!p3@TUB!0.99!10.89!TUB;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr2:2330039..2330072,-!p6@MYT1L!0.99!8.67!MYT1L;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.26!NPAS3;;chr21:34442584..34442587,+!p3@OLIG1!0.98!8.55!OLIG1;;chr4:57522513..57522548,-!p4@HOPX!0.98!8.48!HOPX;;chr17:38256822..38256851,-!p1@NR1D1!0.97!67.30!NR1D1;;chr1:151032739..151032748,+!p6@MLLT11!0.97!10.51!MLLT11;;chr5:92919375..92919438,+!p6@NR2F1!0.97!8.99!NR2F1;;chr2:145277640..145277771,-!p1@ZEB2!0.96!112.06!ZEB2;;chr7:150974206..150974255,-!p1@SMARCD3!0.96!52.42!SMARCD3;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.01!NFIA;;chr8:22550530..22550609,-!p2@EGR3!0.96!8.10!EGR3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.96!8.10!RUNX1T1;;chr10:64134045..64134083,+!p3@ZNF365!0.96!8.04!ZNF365;;chr7:28725740..28725778,+!p1@CREB5!0.95!73.38!CREB5;;chr16:79634624..79634642,-!p1@MAF!0.95!31.78!MAF;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.95!17.54!ZNF395;;chr12:24715376..24715432,-!p1@SOX5!0.95!10.19!SOX5;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.91!SALL1;;chr2:180726331..180726344,-!p5@ZNF385B!0.95!7.85!ZNF385B;;chr17:38219209..38219230,+!p1@THRA!0.94!104.59!THRA;;chr19:53636125..53636178,-!p1@ZNF415!0.94!22.41!ZNF415;;chr21:39870339..39870443,-!p1@ERG!0.94!7.66!ERG;;chr6:126112074..126112144,+!p1@NCOA7!0.93!104.65!NCOA7;;chr17:70117153..70117174,+!p1@SOX9!0.93!80.91!SOX9;;chr1:151032782..151032801,+!p4@MLLT11!0.93!15.45!MLLT11;;chr14:33403648..33403710,+!p3@NPAS3!0.93!7.60!NPAS3;;chr16:51185318..51185348,-!p2@SALL1!0.93!7.53!SALL1;;chr2:2328725..2328739,-!p5@MYT1L!0.93!7.53!MYT1L;;chr3:21792790..21792824,-!p4@ZNF385D!0.93!7.53!ZNF385D;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.47!DLX1;;chr2:2328299..2328363,-!p3@MYT1L!0.93!7.47!MYT1L;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.81!SATB1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.28!LHX6;;chr5:138629628..138629688,+!p2@MATR3!0.91!176.64!MATR3;;chrX:101975643..101975683,+!p1@BHLHB9!0.91!16.21!BHLHB9;;chr19:4065848..4065909,-!p4@ZBTB7A!0.91!14.18!ZBTB7A;;chr8:60031682..60031710,-!p2@TOX!0.91!11.97!TOX;;chr19:57183114..57183145,-!p1@ZNF835!0.91!8.04!ZNF835;;chr11:47400078..47400106,-!p1@SPI1!0.91!7.22!SPI1;;chr4:26344778..26344807,+!p8@RBPJ!0.91!7.15!RBPJ;;chr19:3359158..3359209,+!p5@NFIC!0.90!7.03!NFIC;;chr13:100634031..100634045,+!p1@ZIC2!0.90!7.03!ZIC2;;chr19:7580549..7580596,+!p3@ZNF358!0.90!6.96!ZNF358;;chrX:102000987..102001029,+!p3@BHLHB9!0.90!6.96!BHLHB9;;chr11:31832862..31832884,-!p2@PAX6!0.90!6.90!PAX6;;chr5:178368186..178368238,+!p1@ZNF454!0.89!12.35!ZNF454;;chr9:126774058..126774081,+!p3@LHX2!0.89!6.84!LHX2;;chr4:26344754..26344772,+!p10@RBPJ!0.89!6.77!RBPJ;;chr19:49140609..49140643,-!p1@DBP!0.88!39.25!DBP;;chr2:74229812..74229867,+!p1@TET3!0.88!17.41!TET3;;chr1:151032833..151032850,+!p3@MLLT11!0.88!15.32!MLLT11;;chr12:26277929..26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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001870;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/frontal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10647.10040-101F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10040-101F4
 |is_a=EFO:0002091;;FF:0010040
 |is_obsolete=
+|library_id=CNhs10647
+|library_id_phase_based=2:CNhs10647
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10040
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10040
 |name=frontal lobe, adult, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10647,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636563
@@ Line 61: / Line 79: @@
 |rna_weight_ug=50
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 82: / Line 101: @@
 |top_motifs=NHLH1,2:4.36644742416;REST:4.3334838519;EGR1..3:4.05452705296;PRRX1,2:4.03047404809;AHR_ARNT_ARNT2:3.97434103742;MYFfamily:3.79623220476;ZFP161:3.74953730268;ATF2:3.5953442607;MTE{core}:3.47046669052;MED-1{core}:3.46217452004;ZBTB6:3.28627739565;CUX2:3.2703854288;PAX5:3.24461796749;TFAP2B:3.12020606022;RREB1:3.10911539055;RFX1:3.10673315327;MTF1:3.06848865945;GTF2I:2.8949070556;PRDM1:2.86168550943;DBP:2.83329871185;HOXA9_MEIS1:2.81819842167;HIC1:2.78589852958;MZF1:2.69196057781;SOX2:2.6870402346;SMAD1..7,9:2.57830114451;POU5F1:2.56415675469;OCT4_SOX2{dimer}:2.55407577611;BREu{core}:2.54111893288;NKX3-2:2.48750368276;TGIF1:2.4424238565;FOXM1:2.40658887505;SOX5:2.40496055458;JUN:2.37183092951;LMO2:2.33897330349;NANOG:2.32169226921;POU6F1:2.29366543084;NKX2-3_NKX2-5:2.24381381062;GFI1B:2.24003843705;RFX2..5_RFXANK_RFXAP:2.21798473802;PATZ1:2.18607326108;MAZ:2.1565669529;SOX{8,9,10}:2.10185914257;SOX17:2.08468240054;MAFB:2.05389288913;PAX6:2.02130886926;TFDP1:2.00479403135;NRF1:1.9803220911;CDC5L:1.9226632782;LEF1_TCF7_TCF7L1,2:1.8519322718;GCM1,2:1.82222963345;NFIX:1.80882641992;HMGA1,2:1.76793381233;POU3F1..4:1.69314022603;GATA4:1.62188973256;ARID5B:1.60669669463;KLF4:1.53677183685;HBP1_HMGB_SSRP1_UBTF:1.53095667243;HOX{A4,D4}:1.49906818048;FOXQ1:1.49363056474;NFIL3:1.43982375976;ESRRA:1.3801257512;FOX{F1,F2,J1}:1.34801783891;EBF1:1.34172914525;ZNF238:1.33722278569;MYOD1:1.32714060005;RORA:1.32704763169;RBPJ:1.32559945285;XBP1:1.29295167949;STAT1,3:1.20099228169;EP300:1.19664411819;ADNP_IRX_SIX_ZHX:1.14659445785;GTF2A1,2:1.13257810509;ALX1:1.10526844263;SP1:1.06520536994;SREBF1,2:1.05321241695;ZNF143:0.993249993025;ZNF384:0.990333971698;MEF2{A,B,C,D}:0.97065824204;ZNF423:0.911062805261;CREB1:0.889073714529;CRX:0.870062756422;BPTF:0.830507970396;YY1:0.82640216312;FOXP1:0.812332313587;HAND1,2:0.764106046578;ZEB1:0.760328574761;TLX2:0.753457064763;SPZ1:0.730456342579;FOXN1:0.726833742565;GFI1:0.708937335611;FOXP3:0.662947121565;TFAP2{A,C}:0.637810863842;NKX6-1,2:0.621551987949;T:0.595969222993;TBX4,5:0.592156313793;TLX1..3_NFIC{dimer}:0.580264604919;MYBL2:0.563458681695;PAX4:0.544757381719;ATF4:0.509610048254;TEF:0.491339340339;ATF5_CREB3:0.480763942281;FOX{D1,D2}:0.478440158514;NR3C1:0.471948838427;GZF1:0.41815075244;HMX1:0.383794983898;FOXA2:0.344022361733;POU1F1:0.34087678842;XCPE1{core}:0.288664239914;ONECUT1,2:0.25378044901;ZIC1..3:0.209434440737;NANOG{mouse}:0.161565846431;PBX1:0.130706869801;VSX1,2:0.129003668653;AR:0.117437876365;FOX{I1,J2}:0.0987748399429;IRF7:0.0958556257525;bHLH_family:0.0708969777238;IKZF2:0.0537803680308;PDX1:0.0201453790078;NFY{A,B,C}:0.0196793982634;PAX2:-0.00582401929854;PAX1,9:-0.0831193862219;IKZF1:-0.0841174151664;FOXD3:-0.0844575622644;NFE2L2:-0.108384483949;NFATC1..3:-0.120786807483;HOX{A6,A7,B6,B7}:-0.196265303897;PAX3,7:-0.222318324637;SNAI1..3:-0.25387378925;DMAP1_NCOR{1,2}_SMARC:-0.303690368875;FOXO1,3,4:-0.334529362205;GATA6:-0.339211768081;FOXL1:-0.33958806633;TAL1_TCF{3,4,12}:-0.377143447772;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.382762942695;TFAP4:-0.385820987779;ZNF148:-0.39133214086;IRF1,2:-0.410833564275;LHX3,4:-0.430566192667;TOPORS:-0.449595286768;NFE2L1:-0.472369790054;SPI1:-0.478377939773;PAX8:-0.490571066115;NR5A1,2:-0.491702737627;NFE2:-0.497520414934;UFEwm:-0.4998825763;HSF1,2:-0.594154251802;SPIB:-0.693196077045;NR1H4:-0.706177585555;CEBPA,B_DDIT3:-0.727244234384;ATF6:-0.749282035981;STAT2,4,6:-0.756627899684;ETS1,2:-0.785050764533;HNF1A:-0.820861924115;ELK1,4_GABP{A,B1}:-0.85683801138;FOSL2:-0.868170834738;TFCP2:-0.873595749619;ZBTB16:-0.893920693787;TP53:-0.903396860347;ESR1:-0.956936473137;BACH2:-0.98088883525;FOS_FOS{B,L1}_JUN{B,D}:-1.03045554647;GLI1..3:-1.04815116677;TEAD1:-1.05384641573;PPARG:-1.14332568313;HNF4A_NR2F1,2:-1.16532093389;NKX3-1:-1.18700953705;E2F1..5:-1.20670294052;HIF1A:-1.21321164898;RUNX1..3:-1.22190324933;NFKB1_REL_RELA:-1.28304261586;NKX2-2,8:-1.28576002978;SRF:-1.29998067621;HLF:-1.31076685081;TBP:-1.38557065667;MYB:-1.39720470679;RXR{A,B,G}:-1.40006108713;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.40336570584;ELF1,2,4:-1.43017763776;NKX2-1,4:-1.48102484123;EVI1:-1.56517849776;ALX4:-1.61669742808;RXRA_VDR{dimer}:-1.70967794693;CDX1,2,4:-1.72671605279;AIRE:-1.74388711563;STAT5{A,B}:-1.75239024104;POU2F1..3:-1.77773955899;PITX1..3:-1.8013910043;EN1,2:-1.8067620792;HES1:-2.14946481019;HOX{A5,B5}:-2.24702718931;NR6A1:-3.24728793109
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10040-101F4;search_select_hide=table117:FF:10040-101F4
 }}

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FF:10040-101F4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0