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{{f5samples
{{f5samples
|id=FF:10065-101I2
|DRA_sample_Accession=CAGE@SAMD00005324
|name=skin, fetal, donor1
|accession_numbers=CAGE;DRX008723;DRR009595;DRZ001020;DRZ002405;DRZ012370;DRZ013755
|sample_id=10065
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|rna_tube_id=101I2
|rna_box=101
|rna_position=I2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Biochain
|rna_lot_number=A507299
|rna_catalog_number=Cat:RtHFN: Skin
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=26 weeks fetus
|sample_tissue=skin
|sample_donor(cell lot)=1
|sample_sex=female
|sample_age=
|sample_ethnicity=A?
|rna_rin=8.1
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=50
|rna_concentration=2.7
|sample_note=
|profile_hcage=CNhs11774,LSID820,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000014,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007029,UBERON:0007376,UBERON:0007383
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010065
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.24!172.43!HOPX;;chr17:80797886..80797906,-!p1@ZNF750!1.95!88.40!ZNF750;;chr3:189507432..189507459,+!p1@TP63!1.84!67.51!TP63;;chr3:12330560..12330579,+!p1@PPARG!1.83!76.26!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!1.78!59.74!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.73!141.34!TWIST1;;chr19:33793430..33793447,-!p1@CEBPA!1.71!201.57!CEBPA;;chr15:42749722..42749739,-!p2@ZFP106!1.70!85.49!ZFP106;;chr11:34642612..34642646,+!p1@EHF!1.62!40.80!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.60!48.57!TFAP2C;;chr17:48072574..48072597,-!p1@DLX3!1.59!37.89!DLX3;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.89!DACH1;;chr21:39870339..39870443,-!p1@ERG!1.57!35.94!ERG;;chr16:79634624..79634642,-!p1@MAF!1.56!132.60!MAF;;chr5:158526917..158526932,-!p1@EBF1!1.55!84.03!EBF1;;chr8:10588010..10588030,-!p1@SOX7!1.54!34.00!SOX7;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.40!OSR1;;chr1:209979467..209979494,-!p1@IRF6!1.53!36.43!IRF6;;chr19:46800289..46800327,+!p2@HIF3A!1.53!33.03!HIF3A;;chr2:119605214..119605230,-!p1@EN1!1.53!32.54!EN1;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.97!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.49!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.48!37.40!NFATC2;;chr10:131762504..131762555,-!p1@EBF3!1.48!29.14!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.48!29.14!EBF2;;chr11:129245526..129245553,+!p1@BARX2!1.46!28.17!BARX2;;chr7:15726296..15726315,-!p1@MEOX2!1.45!27.20!MEOX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.45!27.20!ZBED1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.23!HEYL;;chr15:101069113..101069169,-!p1@CERS3!1.44!26.23!CERS3;;chr18:53068911..53068935,-!p4@TCF4!1.43!29.14!TCF4;;chr5:2751762..2751784,-!p1@IRX2!1.41!24.77!IRX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.41!24.77!MLXIPL;;chr12:52437488..52437507,+!p2@NR4A1!1.41!24.77!NR4A1;;chr2:145277882..145277967,-!p3@ZEB2!1.40!40.80!ZEB2;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.29!SOX10;;chr16:85932760..85932775,+!p1@IRF8!1.40!24.29!IRF8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.80!HOXC5;;chr11:120110863..120110908,+!p2@POU2F3!1.39!23.31!POU2F3;;chr1:170633348..170633399,+!p2@PRRX1!1.38!31.09!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.66!SOX18;;chr7:27205136..27205164,-!p1@HOXA9!1.36!21.86!HOXA9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.35!21.37!PEG3;;chr8:99956662..99956684,+!p1@OSR2!1.34!31.57!OSR2;;chr8:102504651..102504683,+!p1@GRHL2!1.33!20.40!GRHL2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.33!20.40!TFCP2L1;;chr2:145277640..145277771,-!p1@ZEB2!1.30!247.23!ZEB2;;chr16:79634595..79634620,-!p2@MAF!1.30!34.49!MAF;;chr2:10091815..10091864,+!p1@GRHL1!1.30!25.26!GRHL1;;chr2:60780753..60780800,-!p1@BCL11A!1.29!89.37!BCL11A;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.49!HOXA3;;chr10:8096631..8096660,+!p1@GATA3!1.26!20.89!GATA3;;chr5:158527104..158527135,-!p4@EBF1!1.26!17.00!EBF1;;chr10:64576105..64576133,-!p1@EGR2!1.25!34.00!EGR2;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!27.69!TFAP2A;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.80!PROX1;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.46!TWIST2;;chr6:144329384..144329405,-!p1@PLAGL1!1.23!182.63!PLAGL1;;chr16:54320675..54320715,-!p1@IRX3!1.23!34.00!IRX3;;chr6:10415276..10415341,-!p2@TFAP2A!1.23!19.43!TFAP2A;;chr1:203055129..203055147,-!p1@MYOG!1.23!16.03!MYOG;;chr6:85474299..85474324,-!p1@TBX18!1.22!27.69!TBX18;;chr6:19837592..19837621,+!p1@ID4!1.20!90.34!ID4;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.83!CREB3L1;;chr6:144289132..144289134,-!p3@PLAGL1!1.19!34.00!PLAGL1;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.57!SOX17;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.83!MEF2C;;chr3:12329397..12329433,+!p2@PPARG!1.18!32.06!PPARG;;chr17:53342311..53342400,+!p1@HLF!1.18!16.03!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.18!14.09!GATA2;;chr11:34535297..34535317,-!p1@ELF5!1.18!14.09!ELF5;;chr7:15726243..15726293,-!p2@MEOX2!1.18!14.09!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!1.18!14.09!DLX5;;chr17:80797863..80797874,-!p2@ZNF750!1.16!13.60!ZNF750;;chr18:45663490..45663528,-!p2@ZBTB7C!1.15!13.11!ZBTB7C;;chr9:1050331..1050363,+!p1@DMRT2!1.15!13.11!DMRT2;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.11!SOX11;;chr1:119530493..119530572,-!p1@TBX15!1.15!13.11!TBX15;;chr1:24645832..24645853,+!p1@GRHL3!1.15!13.11!GRHL3;;chr1:61548225..61548299,+!p1@NFIA!1.14!166.60!NFIA;;chr3:21792585..21792625,-!p2@ZNF385D!1.13!14.09!ZNF385D;;chr19:2867325..2867348,+!p1@ZNF556!1.13!12.63!ZNF556;;chr8:93115274..93115323,-!p4@RUNX1T1!1.12!12.14!RUNX1T1;;chr6:1312325..1312340,+!p1@FOXQ1!1.11!19.43!FOXQ1;;chr12:52445218..52445237,+!p1@NR4A1!1.10!146.68!NR4A1;;chr5:137804484..137804498,+!p2@EGR1!1.10!46.63!EGR1;;chr5:172662197..172662216,-!p1@NKX2-5!1.10!11.66!NKX2-5;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.66!RUNX1T1;;chr1:170633262..170633285,+!p3@PRRX1!1.09!13.11!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.09!11.17!PAX3;;chr10:70320074..70320106,+!p1@TET1!1.08!22.34!TET1;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.09!IRX3;;chr1:10754477..10754517,-!p1@CASZ1!1.07!17.97!CASZ1;;chr1:10856639..10856662,-!p2@CASZ1!1.07!10.69!CASZ1;;chr5:3595961..3595975,+!p3@IRX1!1.07!10.69!IRX1;;chr6:34524093..34524135,-!p1@SPDEF!1.07!10.69!SPDEF;;chr6:50786591..50786614,+!p1@TFAP2B!1.07!10.69!TFAP2B;;chr9:14314566..14314618,-!p1@NFIB!1.06!125.80!NFIB;;chr3:69788576..69788648,+!p1@MITF!1.05!55.37!MITF;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!23.80!ZBTB20;;chr1:61548374..61548415,+!p4@NFIA!1.05!19.43!NFIA;;chr10:8096772..8096787,+!p2@GATA3!1.05!12.14!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!1.05!10.20!PKNOX2;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.20!OVOL1;;chr1:201979743..201979762,+!p1@ELF3!1.05!10.20!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.05!10.20!HOXB6;;chr2:177001290..177001315,+!p1@HOXD3!1.05!10.20!HOXD3;;chr9:126774018..126774055,+!p1@LHX2!1.05!10.20!LHX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.23!ZFPM2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.04!12.63!L3MBTL4;;chr1:23696308..23696339,-!p2@ZNF436!1.03!20.89!ZNF436;;chr17:41739283..41739297,-!p1@MEOX1!1.03!9.71!MEOX1;;chr18:53089538..53089578,-!p14@TCF4!1.03!9.71!TCF4;;chr9:132427883..132427951,+!p2@PRRX2!1.03!9.71!PRRX2;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.71!IRX1;;chr2:60781201..60781258,-!p3@BCL11A!1.03!9.71!BCL11A;;chr14:75745523..75745537,+!p1@FOS!1.02!1155.99!FOS;;chr18:52989031..52989079,-!p2@TCF4!1.02!22.83!TCF4;;chr9:14314522..14314556,-!p3@NFIB!1.01!21.86!NFIB;;chr1:164528616..164528660,+!p5@PBX1!1.01!19.43!PBX1;;chr20:30433396..30433414,-!p1@FOXS1!1.01!9.23!FOXS1;;chr8:93115445..93115462,-!p7@RUNX1T1!1.01!9.23!RUNX1T1;;chr7:28725740..28725778,+!p1@CREB5!1.00!81.60!CREB5;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.54!CREB5;;chr1:61547894..61547968,+!p2@NFIA!1.00!26.71!NFIA;;chr7:42276787..42276815,-!p1@GLI3!1.00!24.77!GLI3;;chr12:53625966..53626012,-!p2@RARG!1.00!24.29!RARG;;chr12:54785074..54785122,-!p2@ZNF385A!1.00!14.09!ZNF385A;;chr17:17726907..17726958,-!p2@SREBF1!0.99!55.86!SREBF1;;chr9:14314131..14314147,-!p2@NFIB!0.99!49.54!NFIB;;chr17:7493405..7493419,-!p1@SOX15!0.99!8.74!SOX15;;chr3:21792682..21792720,-!p1@ZNF385D!0.99!8.74!ZNF385D;;chr10:119302508..119302559,+!p5@EMX2!0.99!8.74!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.99!8.74!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.74!DACH1;;chr1:201979703..201979721,+!p2@ELF3!0.99!8.74!ELF3;;chr18:22932080..22932170,-!p1@ZNF521!0.98!37.40!ZNF521;;chr3:12329358..12329393,+!p3@PPARG!0.98!21.37!PPARG;;chr19:45971246..45971265,+!p1@FOSB!0.97!161.26!FOSB;;chr17:70117153..70117174,+!p1@SOX9!0.97!88.40!SOX9;;chr15:60884706..60884743,-!p1@RORA!0.97!44.20!RORA;;chrX:84498989..84499003,+!p1@ZNF711!0.97!11.66!ZNF711;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.26!HOXD10;;chr2:68592406..68592424,+!p1@PLEK!0.97!8.26!PLEK;;chr15:57210961..57211012,+!p3@TCF12!0.96!26.71!TCF12;;chr12:96588368..96588394,+!p3@ELK3!0.96!22.34!ELK3;;chr13:73633131..73633149,+!p1@KLF5!0.95!87.91!KLF5;;chr1:61548069..61548102,+!p3@NFIA!0.94!19.43!NFIA;;chr1:170632583..170632590,+!p26@PRRX1!0.94!7.77!PRRX1;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.77!IRF6;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.77!TBX1;;chr4:111558135..111558198,-!p2@PITX2!0.94!7.77!PITX2;;chr9:126773880..126773895,+!p2@LHX2!0.94!7.77!LHX2;;chr11:44331576..44331650,-!p1@ALX4!0.94!7.77!ALX4;;chr12:54422217..54422239,+!p3@HOXC6!0.94!7.77!HOXC6;;chr5:124082322..124082364,-!p1@ZNF608!0.93!19.91!ZNF608;;chr19:13134772..13134822,+!p2@NFIX!0.93!11.17!NFIX;;chr1:61924375..61924380,+!p6@NFIA!0.93!10.69!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.92!17.00!NR1H3;;chr16:54964740..54964789,+!p1@IRX5!0.92!10.69!IRX5;;chr10:8095593..8095625,+!p3@GATA3!0.92!8.74!GATA3;;chr14:75747296..75747329,+!p4@FOS!0.92!7.29!FOS;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.29!HOXD8;;chr4:174451370..174451387,-!p1@HAND2!0.92!7.29!HAND2;;chr6:10419768..10419819,-!p6@TFAP2A!0.92!7.29!TFAP2A;;chr8:93107451..93107468,-!p2@RUNX1T1!0.92!7.29!RUNX1T1;;chr9:14314946..14314983,-!p8@NFIB!0.92!7.29!NFIB;;chr9:14313641..14313652,-!p13@NFIB!0.92!7.29!NFIB;;chr6:21593973..21593988,+!p1@SOX4!0.91!267.63!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.91!60.23!SOX4;;chr2:60780607..60780624,-!p2@BCL11A!0.91!22.83!BCL11A;;chr8:22550982..22550999,-!p1@EGR3!0.91!20.89!EGR3;;chr6:91006518..91006570,-!p1@BACH2!0.91!17.00!BACH2;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.26!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!0.90!20.40!PRDM1;;chr18:77155922..77155939,+!p1@NFATC1!0.90!19.91!NFATC1;;chr3:42947600..42947680,+!p1@ZNF662!0.90!10.20!ZNF662;;chr3:169381420..169381535,-!p1@MECOM!0.90!8.26!MECOM;;chr10:114710098..114710130,+!p2@TCF7L2!0.89!53.43!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.63!AEBP1;;chr5:158526459..158526481,-!p2@EBF1!0.89!9.23!EBF1;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.23!BHLHE41;;chr12:54785054..54785072,-!p4@ZNF385A!0.89!7.77!ZNF385A;;chr11:129245736..129245758,+!p2@BARX2!0.89!6.80!BARX2;;chr12:54410948..54410992,+!p3@HOXC5!0.89!6.80!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.89!6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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|creation_date=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.ctss.bed.gz
|id=FF:10065-101I2
|is_a=EFO:0002091;;FF:0010065
|is_obsolete=
|library_id=CNhs11774
|library_id_phase_based=2:CNhs11774
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10065
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10065
|name=skin, fetal, donor1
|namespace=FANTOM5
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|rna_box=101
|rna_catalog_number=Cat:RtHFN: Skin
|rna_concentration=2.7
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=A507299
|rna_od260/230=
|rna_od260/280=
|rna_position=I2
|rna_rin=8.1
|rna_sample_type=total RNA
|rna_tube_id=101I2
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Biochain
|sample_description=
|sample_dev_stage=26 weeks fetus
|sample_disease=normal
|sample_donor(cell lot)=1
|sample_ethnicity=A?
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.31569884321965e-212!GO:0005737;cytoplasm;4.95109306495147e-174!GO:0043226;organelle;2.85234975591911e-159!GO:0043229;intracellular organelle;5.90267806332396e-159!GO:0044422;organelle part;4.00324041220173e-115!GO:0044446;intracellular organelle part;5.57055351391626e-114!GO:0043231;intracellular membrane-bound organelle;7.68671524085898e-113!GO:0043227;membrane-bound organelle;9.2139032965447e-113!GO:0044444;cytoplasmic part;4.8399618831143e-111!GO:0005515;protein binding;4.42989231840342e-98!GO:0032991;macromolecular complex;1.49961246013545e-70!GO:0043228;non-membrane-bound organelle;3.38454353407911e-55!GO:0043232;intracellular non-membrane-bound organelle;3.38454353407911e-55!GO:0030529;ribonucleoprotein complex;2.04227398616185e-49!GO:0044238;primary metabolic process;2.62314604541269e-49!GO:0044237;cellular metabolic process;6.46042131912739e-47!GO:0043233;organelle lumen;6.20425539574094e-46!GO:0031974;membrane-enclosed lumen;6.20425539574094e-46!GO:0016043;cellular component organization and biogenesis;6.65866769773582e-46!GO:0043170;macromolecule metabolic process;1.07190865172061e-45!GO:0003723;RNA binding;6.05970751991994e-42!GO:0044428;nuclear part;8.00747729527077e-42!GO:0005634;nucleus;1.58806358865452e-40!GO:0043234;protein complex;2.48839061961872e-39!GO:0005739;mitochondrion;2.6351963311099e-39!GO:0019538;protein metabolic process;7.69221119550701e-36!GO:0031090;organelle membrane;8.42159829092314e-32!GO:0005829;cytosol;1.31579825463719e-31!GO:0005840;ribosome;5.33796983508577e-31!GO:0044429;mitochondrial part;1.59433801831676e-30!GO:0044260;cellular macromolecule metabolic process;7.61698178459058e-30!GO:0033036;macromolecule localization;9.23687777583717e-30!GO:0031967;organelle envelope;1.50465317427842e-29!GO:0031975;envelope;2.10220339376162e-29!GO:0015031;protein transport;9.75536247923879e-29!GO:0044267;cellular protein metabolic process;1.31549589839349e-28!GO:0003735;structural constituent of ribosome;7.41482011325985e-28!GO:0006412;translation;9.48243149763113e-28!GO:0008104;protein localization;1.75711639217252e-27!GO:0065003;macromolecular complex assembly;1.85923221159149e-27!GO:0022607;cellular component assembly;4.1340019570199e-27!GO:0016071;mRNA metabolic process;7.56126351977763e-27!GO:0045184;establishment of protein localization;7.85155505533218e-27!GO:0046907;intracellular transport;1.90055291759588e-26!GO:0008380;RNA splicing;9.22700741273768e-26!GO:0006396;RNA processing;1.64680148002375e-25!GO:0005856;cytoskeleton;1.87226459168034e-25!GO:0033279;ribosomal subunit;5.45732552985327e-25!GO:0031981;nuclear lumen;1.34553824984663e-24!GO:0006996;organelle organization and biogenesis;5.72928374648863e-24!GO:0006397;mRNA processing;2.47706226533711e-22!GO:0043283;biopolymer metabolic process;3.54548945515418e-21!GO:0006886;intracellular protein transport;3.97167574513219e-21!GO:0010467;gene expression;5.43339616252912e-21!GO:0044249;cellular biosynthetic process;9.91578019292072e-21!GO:0019866;organelle inner membrane;1.03390309264296e-20!GO:0009058;biosynthetic process;1.10680100382293e-20!GO:0005740;mitochondrial envelope;2.06928270910872e-20!GO:0048770;pigment granule;2.53355355433651e-20!GO:0042470;melanosome;2.53355355433651e-20!GO:0031966;mitochondrial membrane;2.53355355433651e-20!GO:0008092;cytoskeletal protein binding;2.6966425592939e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.45017905931602e-20!GO:0009059;macromolecule biosynthetic process;1.57346802766103e-19!GO:0005743;mitochondrial inner membrane;5.83145882282991e-19!GO:0006119;oxidative phosphorylation;2.94110613631032e-18!GO:0044445;cytosolic part;3.75187810384872e-18!GO:0044455;mitochondrial membrane part;3.90237926577881e-17!GO:0005783;endoplasmic reticulum;6.76914517609475e-17!GO:0008134;transcription factor binding;7.68853534238878e-17!GO:0005681;spliceosome;8.14986231185369e-17!GO:0051641;cellular localization;1.54726719338506e-16!GO:0015629;actin cytoskeleton;1.87966895103004e-16!GO:0051649;establishment of cellular localization;2.31704640568022e-16!GO:0005654;nucleoplasm;3.23898277352825e-16!GO:0005746;mitochondrial respiratory chain;7.98640468233315e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.19598706423703e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.38220042954874e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.06491231354066e-13!GO:0003954;NADH dehydrogenase activity;1.06491231354066e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.06491231354066e-13!GO:0031980;mitochondrial lumen;4.30203016643615e-13!GO:0005759;mitochondrial matrix;4.30203016643615e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.08324535171704e-13!GO:0015934;large ribosomal subunit;5.12349345223309e-13!GO:0044451;nucleoplasm part;5.57067582794681e-13!GO:0016192;vesicle-mediated transport;5.90590566223199e-13!GO:0015935;small ribosomal subunit;6.06926720955194e-13!GO:0044449;contractile fiber part;6.93241822905529e-13!GO:0022618;protein-RNA complex assembly;6.97610535426741e-13!GO:0003779;actin binding;7.78392498280096e-13!GO:0044430;cytoskeletal part;9.26769769543742e-13!GO:0012505;endomembrane system;1.51288080404469e-12!GO:0000166;nucleotide binding;3.25550768406439e-12!GO:0048193;Golgi vesicle transport;4.95000731331674e-12!GO:0048523;negative regulation of cellular process;5.03448306335072e-12!GO:0043292;contractile fiber;6.02245080070599e-12!GO:0006461;protein complex assembly;8.30601926169481e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.16414259601365e-11!GO:0045271;respiratory chain complex I;1.16414259601365e-11!GO:0005747;mitochondrial respiratory chain complex I;1.16414259601365e-11!GO:0006457;protein folding;1.35406993523104e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.44843930689115e-11!GO:0042773;ATP synthesis coupled electron transport;1.44843930689115e-11!GO:0006366;transcription from RNA polymerase II promoter;1.9030123923309e-11!GO:0008307;structural constituent of muscle;2.74602397036387e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.31625265876834e-11!GO:0044432;endoplasmic reticulum part;4.47738717002182e-11!GO:0005794;Golgi apparatus;4.90580549655845e-11!GO:0030029;actin filament-based process;6.60084799981747e-11!GO:0048519;negative regulation of biological process;7.60805606286436e-11!GO:0008135;translation factor activity, nucleic acid binding;8.52471774683073e-11!GO:0006605;protein targeting;1.04785047933834e-10!GO:0016462;pyrophosphatase activity;1.59978760706823e-10!GO:0006259;DNA metabolic process;1.60655408534999e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.77064499326671e-10!GO:0003712;transcription cofactor activity;1.77310712761307e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.78385584148272e-10!GO:0017111;nucleoside-triphosphatase activity;1.9291515179428e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;2.06498122682921e-10!GO:0030016;myofibril;2.65947085664165e-10!GO:0016874;ligase activity;4.5138266517154e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.5411557058315e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;5.3386536390293e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.50149248769765e-10!GO:0005635;nuclear envelope;5.78846531564798e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.47896578223417e-10!GO:0044257;cellular protein catabolic process;7.40883197115442e-10!GO:0019941;modification-dependent protein catabolic process;9.46604971588253e-10!GO:0043632;modification-dependent macromolecule catabolic process;9.46604971588253e-10!GO:0008565;protein transporter activity;2.11533591530555e-09!GO:0006512;ubiquitin cycle;2.48318049416635e-09!GO:0044265;cellular macromolecule catabolic process;2.6771611375494e-09!GO:0003676;nucleic acid binding;3.3206345858811e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.3206345858811e-09!GO:0031965;nuclear membrane;3.81918050749299e-09!GO:0051186;cofactor metabolic process;4.48750265705994e-09!GO:0006913;nucleocytoplasmic transport;5.28476767310152e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.90490703992976e-09!GO:0030017;sarcomere;6.98941990445651e-09!GO:0007010;cytoskeleton organization and biogenesis;9.05795718443661e-09!GO:0005788;endoplasmic reticulum lumen;9.47710150399069e-09!GO:0051169;nuclear transport;1.03513143275523e-08!GO:0006446;regulation of translational initiation;1.075349167595e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.14982089918327e-08!GO:0000375;RNA splicing, via transesterification reactions;1.14982089918327e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.14982089918327e-08!GO:0005761;mitochondrial ribosome;1.19138176361641e-08!GO:0000313;organellar ribosome;1.19138176361641e-08!GO:0005793;ER-Golgi intermediate compartment;1.1974380109935e-08!GO:0007049;cell cycle;1.2169472593015e-08!GO:0016070;RNA metabolic process;1.2169472593015e-08!GO:0030163;protein catabolic process;1.34043806320593e-08!GO:0016564;transcription repressor activity;1.43629884934539e-08!GO:0051082;unfolded protein binding;1.66574017901215e-08!GO:0050789;regulation of biological process;1.95934069363767e-08!GO:0005730;nucleolus;2.10091842743182e-08!GO:0043285;biopolymer catabolic process;2.22645915116064e-08!GO:0016481;negative regulation of transcription;2.49077657075039e-08!GO:0016604;nuclear body;2.8654906307603e-08!GO:0031988;membrane-bound vesicle;3.67501415372859e-08!GO:0043412;biopolymer modification;3.71548036215331e-08!GO:0032553;ribonucleotide binding;4.12450981274839e-08!GO:0032555;purine ribonucleotide binding;4.12450981274839e-08!GO:0044420;extracellular matrix part;4.1551690173232e-08!GO:0031982;vesicle;4.75081980032749e-08!GO:0009060;aerobic respiration;4.75927653336803e-08!GO:0043687;post-translational protein modification;4.87379713317684e-08!GO:0050794;regulation of cellular process;5.19885114817864e-08!GO:0003743;translation initiation factor activity;5.22260823867841e-08!GO:0006413;translational initiation;5.36120124545852e-08!GO:0016023;cytoplasmic membrane-bound vesicle;5.60349244945992e-08!GO:0031324;negative regulation of cellular metabolic process;6.48165835624621e-08!GO:0045333;cellular respiration;7.15694587360237e-08!GO:0031410;cytoplasmic vesicle;8.08387633377679e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05350733221975e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.31716374146156e-07!GO:0017076;purine nucleotide binding;1.52231154105622e-07!GO:0009892;negative regulation of metabolic process;1.55027510530545e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.96690036824664e-07!GO:0009057;macromolecule catabolic process;2.14614208951927e-07!GO:0006464;protein modification process;2.19649343359041e-07!GO:0016607;nuclear speck;2.37551655995885e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.91073682009035e-07!GO:0007517;muscle development;3.24741213366184e-07!GO:0031252;leading edge;4.18192797798568e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.2304816108713e-07!GO:0019829;cation-transporting ATPase activity;5.10871353596107e-07!GO:0017038;protein import;5.12022782788165e-07!GO:0006099;tricarboxylic acid cycle;6.27827262440663e-07!GO:0046356;acetyl-CoA catabolic process;6.27827262440663e-07!GO:0008639;small protein conjugating enzyme activity;7.88987211381131e-07!GO:0004842;ubiquitin-protein ligase activity;8.03557069225165e-07!GO:0006732;coenzyme metabolic process;8.16983126808666e-07!GO:0044248;cellular catabolic process;8.26607867653245e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.26607867653245e-07!GO:0030120;vesicle coat;8.74519641856667e-07!GO:0030662;coated vesicle membrane;8.74519641856667e-07!GO:0044453;nuclear membrane part;1.02128302839739e-06!GO:0045892;negative regulation of transcription, DNA-dependent;1.27794825949085e-06!GO:0048475;coated membrane;1.30218903198008e-06!GO:0030117;membrane coat;1.30218903198008e-06!GO:0006323;DNA packaging;1.49177310433403e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.78896165028208e-06!GO:0012501;programmed cell death;2.20448047610492e-06!GO:0009109;coenzyme catabolic process;2.41165049909674e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.68782385438634e-06!GO:0006084;acetyl-CoA metabolic process;2.85565262199124e-06!GO:0006915;apoptosis;2.8779342047726e-06!GO:0005581;collagen;3.27335676408358e-06!GO:0051276;chromosome organization and biogenesis;3.39628732855176e-06!GO:0006163;purine nucleotide metabolic process;3.59789985427939e-06!GO:0019787;small conjugating protein ligase activity;3.63404499095771e-06!GO:0045786;negative regulation of progression through cell cycle;3.67407256233792e-06!GO:0009055;electron carrier activity;3.67913124767704e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.85139299314467e-06!GO:0007398;ectoderm development;3.93376581723194e-06!GO:0005789;endoplasmic reticulum membrane;4.08679230670295e-06!GO:0015986;ATP synthesis coupled proton transport;4.39788803830106e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.39788803830106e-06!GO:0009150;purine ribonucleotide metabolic process;4.55173854381922e-06!GO:0006793;phosphorus metabolic process;5.18672956130255e-06!GO:0006796;phosphate metabolic process;5.18672956130255e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.39851279102947e-06!GO:0016887;ATPase activity;6.24678295693095e-06!GO:0005865;striated muscle thin filament;6.41434697657571e-06!GO:0000074;regulation of progression through cell cycle;6.54371567098415e-06!GO:0051726;regulation of cell cycle;6.81814257804177e-06!GO:0005524;ATP binding;6.90010236280598e-06!GO:0009259;ribonucleotide metabolic process;7.44920608544136e-06!GO:0051187;cofactor catabolic process;7.45546033540513e-06!GO:0032559;adenyl ribonucleotide binding;7.58213008460347e-06!GO:0042802;identical protein binding;7.6189684226384e-06!GO:0008219;cell death;8.00095353546844e-06!GO:0016265;death;8.00095353546844e-06!GO:0005768;endosome;8.8415242002209e-06!GO:0006606;protein import into nucleus;8.91188976021026e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.50733647977188e-06!GO:0003714;transcription corepressor activity;1.03098417286346e-05!GO:0008544;epidermis development;1.1694227420365e-05!GO:0005798;Golgi-associated vesicle;1.23522360664533e-05!GO:0016563;transcription activator activity;1.28929368354247e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.44263757511156e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.44263757511156e-05!GO:0051246;regulation of protein metabolic process;1.51042099454252e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.53435143559362e-05!GO:0005583;fibrillar collagen;1.5756102277609e-05!GO:0003713;transcription coactivator activity;1.57897452420064e-05!GO:0046034;ATP metabolic process;1.70601914223486e-05!GO:0051170;nuclear import;1.72880416196303e-05!GO:0009141;nucleoside triphosphate metabolic process;1.7339131479447e-05!GO:0043566;structure-specific DNA binding;1.99442199804106e-05!GO:0045259;proton-transporting ATP synthase complex;2.42258295437408e-05!GO:0042623;ATPase activity, coupled;2.443907841501e-05!GO:0030554;adenyl nucleotide binding;2.7681133597675e-05!GO:0008361;regulation of cell size;2.97666085530281e-05!GO:0022402;cell cycle process;3.00650656697101e-05!GO:0007264;small GTPase mediated signal transduction;3.20479524009648e-05!GO:0016049;cell growth;3.92801469184844e-05!GO:0016310;phosphorylation;4.00156066120874e-05!GO:0000245;spliceosome assembly;4.02646756851343e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.13881644924113e-05!GO:0003697;single-stranded DNA binding;4.37067102775017e-05!GO:0006164;purine nucleotide biosynthetic process;4.55984503976302e-05!GO:0065007;biological regulation;4.59326596620907e-05!GO:0005643;nuclear pore;4.66064646698695e-05!GO:0006613;cotranslational protein targeting to membrane;5.65017200984139e-05!GO:0009152;purine ribonucleotide biosynthetic process;6.12868641915852e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.2248300344877e-05!GO:0032446;protein modification by small protein conjugation;6.2248300344877e-05!GO:0003924;GTPase activity;7.38653108638062e-05!GO:0030532;small nuclear ribonucleoprotein complex;8.13615168702713e-05!GO:0019899;enzyme binding;0.000110199892334034!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000110199892334034!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000110199892334034!GO:0009142;nucleoside triphosphate biosynthetic process;0.000117315131053014!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000117315131053014!GO:0006333;chromatin assembly or disassembly;0.000120451675037859!GO:0006974;response to DNA damage stimulus;0.000121018256566151!GO:0006754;ATP biosynthetic process;0.000126307064935955!GO:0006753;nucleoside phosphate metabolic process;0.000126307064935955!GO:0009260;ribonucleotide biosynthetic process;0.000133264667168993!GO:0016881;acid-amino acid ligase activity;0.000146002149910451!GO:0016567;protein ubiquitination;0.00014989162798685!GO:0009056;catabolic process;0.000164463792684036!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000169851685395824!GO:0065004;protein-DNA complex assembly;0.000170056056730312!GO:0051427;hormone receptor binding;0.000175282111039243!GO:0050657;nucleic acid transport;0.000177813909260794!GO:0051236;establishment of RNA localization;0.000177813909260794!GO:0050658;RNA transport;0.000177813909260794!GO:0006916;anti-apoptosis;0.000180720969339505!GO:0065002;intracellular protein transport across a membrane;0.000202057540129566!GO:0006403;RNA localization;0.00020679676295696!GO:0006941;striated muscle contraction;0.000207226619366911!GO:0048471;perinuclear region of cytoplasm;0.000207514189323234!GO:0000151;ubiquitin ligase complex;0.000227348029160994!GO:0007265;Ras protein signal transduction;0.000240123873974475!GO:0016044;membrane organization and biogenesis;0.000240846554455965!GO:0030133;transport vesicle;0.000246505900075313!GO:0022890;inorganic cation transmembrane transporter activity;0.000272152698378622!GO:0016568;chromatin modification;0.000276637108900764!GO:0005667;transcription factor complex;0.000305743914388673!GO:0035257;nuclear hormone receptor binding;0.000305743914388673!GO:0005525;GTP binding;0.000311329868912059!GO:0005912;adherens junction;0.000316073586557792!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000327245129491029!GO:0005770;late endosome;0.000342091828719316!GO:0005083;small GTPase regulator activity;0.000371297807108317!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000400716505030683!GO:0007005;mitochondrion organization and biogenesis;0.00043269432192208!GO:0030027;lamellipodium;0.00045369674431027!GO:0000785;chromatin;0.000494892256626438!GO:0043623;cellular protein complex assembly;0.000533818060197784!GO:0006260;DNA replication;0.000540262336240597!GO:0005791;rough endoplasmic reticulum;0.000552763007935831!GO:0009719;response to endogenous stimulus;0.000576622995318557!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000589114749485459!GO:0004812;aminoacyl-tRNA ligase activity;0.000589114749485459!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000589114749485459!GO:0043069;negative regulation of programmed cell death;0.000596759556641792!GO:0044431;Golgi apparatus part;0.000656683978277781!GO:0042254;ribosome biogenesis and assembly;0.000656694257266234!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000665286031006121!GO:0043066;negative regulation of apoptosis;0.000665286031006121!GO:0045893;positive regulation of transcription, DNA-dependent;0.000727153762715019!GO:0003690;double-stranded DNA binding;0.00072896619587156!GO:0005839;proteasome core complex (sensu Eukaryota);0.000734775080106164!GO:0005200;structural constituent of cytoskeleton;0.000768756578312415!GO:0051789;response to protein stimulus;0.000845219579171222!GO:0006986;response to unfolded protein;0.000845219579171222!GO:0005773;vacuole;0.000894576445763792!GO:0006334;nucleosome assembly;0.000922946101408086!GO:0005769;early endosome;0.000922946101408086!GO:0016859;cis-trans isomerase activity;0.000924968783636485!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000951408124487605!GO:0005523;tropomyosin binding;0.000963735183309612!GO:0001558;regulation of cell growth;0.000975061023742909!GO:0005578;proteinaceous extracellular matrix;0.000990560978301586!GO:0001725;stress fiber;0.00100697221277331!GO:0032432;actin filament bundle;0.00100697221277331!GO:0008250;oligosaccharyl transferase complex;0.00100955641819451!GO:0044440;endosomal part;0.00100955641819451!GO:0010008;endosome membrane;0.00100955641819451!GO:0043038;amino acid activation;0.00101740227916423!GO:0006418;tRNA aminoacylation for protein translation;0.00101740227916423!GO:0043039;tRNA aminoacylation;0.00101740227916423!GO:0016197;endosome transport;0.0010207075573616!GO:0005694;chromosome;0.00107838861318448!GO:0005762;mitochondrial large ribosomal subunit;0.00110673189789287!GO:0000315;organellar large ribosomal subunit;0.00110673189789287!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00111359769061423!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00111359769061423!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00111359769061423!GO:0051188;cofactor biosynthetic process;0.00111903287830013!GO:0046930;pore complex;0.00111903287830013!GO:0006091;generation of precursor metabolites and energy;0.00113696218511158!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00113868000491498!GO:0046983;protein dimerization activity;0.00115710814656336!GO:0048522;positive regulation of cellular process;0.00116128660987613!GO:0030663;COPI coated vesicle membrane;0.00116201067584933!GO:0030126;COPI vesicle coat;0.00116201067584933!GO:0004576;oligosaccharyl transferase activity;0.00116702381539171!GO:0001726;ruffle;0.00116702381539171!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00118888624278593!GO:0030867;rough endoplasmic reticulum membrane;0.00118956525331527!GO:0031589;cell-substrate adhesion;0.00119134795935124!GO:0004386;helicase activity;0.00121906706646793!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00129501960297634!GO:0032561;guanyl ribonucleotide binding;0.00130398468521993!GO:0019001;guanyl nucleotide binding;0.00130398468521993!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0013320999381097!GO:0015630;microtubule cytoskeleton;0.0013373777009851!GO:0005813;centrosome;0.00137282907055215!GO:0033673;negative regulation of kinase activity;0.00139062962047685!GO:0006469;negative regulation of protein kinase activity;0.00139062962047685!GO:0000323;lytic vacuole;0.00145367503177018!GO:0005764;lysosome;0.00145367503177018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00151435674401956!GO:0015002;heme-copper terminal oxidase activity;0.00151435674401956!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00151435674401956!GO:0004129;cytochrome-c oxidase activity;0.00151435674401956!GO:0006979;response to oxidative stress;0.00155168456500864!GO:0051028;mRNA transport;0.00155208413081789!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00167503260506906!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00175057795473942!GO:0006281;DNA repair;0.00175500528448947!GO:0051920;peroxiredoxin activity;0.00182313139279954!GO:0051287;NAD binding;0.00185476781048507!GO:0007160;cell-matrix adhesion;0.00187590538363737!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00194271669352509!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00198007849734716!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00201531186091259!GO:0007266;Rho protein signal transduction;0.00202668869141501!GO:0004298;threonine endopeptidase activity;0.00206904016279448!GO:0005905;coated pit;0.00209915334872034!GO:0005586;collagen type III;0.00210467643410686!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00217478583737061!GO:0045941;positive regulation of transcription;0.00227119238667396!GO:0031497;chromatin assembly;0.00229396727339744!GO:0045111;intermediate filament cytoskeleton;0.00248730813577463!GO:0005882;intermediate filament;0.00248730813577463!GO:0008654;phospholipid biosynthetic process;0.00254001996418152!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00270794507066496!GO:0033043;regulation of organelle organization and biogenesis;0.00270794507066496!GO:0005048;signal sequence binding;0.0028003909593741!GO:0005885;Arp2/3 protein complex;0.00282917745581732!GO:0051252;regulation of RNA metabolic process;0.00282917745581732!GO:0005861;troponin complex;0.00295228378345888!GO:0031968;organelle outer membrane;0.00298815927491484!GO:0006897;endocytosis;0.00300034027271122!GO:0010324;membrane invagination;0.00300034027271122!GO:0030018;Z disc;0.00305889638951533!GO:0006414;translational elongation;0.00306111130709127!GO:0051348;negative regulation of transferase activity;0.00315577374261159!GO:0005604;basement membrane;0.00347513757856511!GO:0031674;I band;0.00350912479500097!GO:0014706;striated muscle development;0.00355031687169669!GO:0006752;group transfer coenzyme metabolic process;0.00357048498653028!GO:0009966;regulation of signal transduction;0.00361733260368744!GO:0042981;regulation of apoptosis;0.00365325204436666!GO:0019867;outer membrane;0.00378668644257077!GO:0005741;mitochondrial outer membrane;0.00397584835415594!GO:0005938;cell cortex;0.00412737907763421!GO:0008026;ATP-dependent helicase activity;0.00418592607989183!GO:0008154;actin polymerization and/or depolymerization;0.00445723133831978!GO:0030031;cell projection biogenesis;0.00453600117239457!GO:0005815;microtubule organizing center;0.00457052565522322!GO:0006612;protein targeting to membrane;0.00467029179403509!GO:0016529;sarcoplasmic reticulum;0.00500307092485971!GO:0016528;sarcoplasm;0.00500307092485971!GO:0016126;sterol biosynthetic process;0.00500723324970166!GO:0035258;steroid hormone receptor binding;0.00503003394733164!GO:0005859;muscle myosin complex;0.00510508479264879!GO:0003702;RNA polymerase II transcription factor activity;0.00518503959766909!GO:0003012;muscle system process;0.00539563370695833!GO:0006936;muscle contraction;0.00539563370695833!GO:0030134;ER to Golgi transport vesicle;0.00563983576489717!GO:0033116;ER-Golgi intermediate compartment membrane;0.00567908715974429!GO:0043067;regulation of programmed cell death;0.00574790666458938!GO:0006402;mRNA catabolic process;0.00574790666458938!GO:0043021;ribonucleoprotein binding;0.00584679689586745!GO:0030695;GTPase regulator activity;0.00595964753743673!GO:0016853;isomerase activity;0.00596501423547607!GO:0044427;chromosomal part;0.00614290831984968!GO:0030137;COPI-coated vesicle;0.00619897160640568!GO:0009117;nucleotide metabolic process;0.00646331376004536!GO:0030118;clathrin coat;0.00651042956140087!GO:0043488;regulation of mRNA stability;0.00651042956140087!GO:0043487;regulation of RNA stability;0.00651042956140087!GO:0030127;COPII vesicle coat;0.00653708862411618!GO:0012507;ER to Golgi transport vesicle membrane;0.00653708862411618!GO:0019843;rRNA binding;0.00684764685437395!GO:0003724;RNA helicase activity;0.0071110644324737!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0071110644324737!GO:0048518;positive regulation of biological process;0.00734789669271362!GO:0006891;intra-Golgi vesicle-mediated transport;0.00744375578624091!GO:0000314;organellar small ribosomal subunit;0.00746188844703255!GO:0005763;mitochondrial small ribosomal subunit;0.00746188844703255!GO:0000902;cell morphogenesis;0.00767201876074545!GO:0032989;cellular structure morphogenesis;0.00767201876074545!GO:0005201;extracellular matrix structural constituent;0.00781007469980831!GO:0006818;hydrogen transport;0.00803430539827213!GO:0016584;nucleosome positioning;0.00810194317450514!GO:0031901;early endosome membrane;0.00834312919146964!GO:0030832;regulation of actin filament length;0.00841645444568806!GO:0015992;proton transport;0.00848726446687863!GO:0016363;nuclear matrix;0.00848883673780391!GO:0032535;regulation of cellular component size;0.00850982122159454!GO:0005100;Rho GTPase activator activity;0.00851715482419618!GO:0003746;translation elongation factor activity;0.00870731849686544!GO:0051168;nuclear export;0.00883241084786151!GO:0043284;biopolymer biosynthetic process;0.00883241084786151!GO:0048500;signal recognition particle;0.00909962797282807!GO:0031032;actomyosin structure organization and biogenesis;0.00922580206117764!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00922952273906713!GO:0001666;response to hypoxia;0.00922952273906713!GO:0009108;coenzyme biosynthetic process;0.00942378587573562!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00957663610424787!GO:0030132;clathrin coat of coated pit;0.00968701984337017!GO:0030658;transport vesicle membrane;0.00978280094768165!GO:0003729;mRNA binding;0.0098045923631661!GO:0018196;peptidyl-asparagine modification;0.00985140504803878!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00985140504803878!GO:0017166;vinculin binding;0.0100362445242243!GO:0005913;cell-cell adherens junction;0.0100417352184774!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0100417352184774!GO:0051087;chaperone binding;0.0103779239273296!GO:0006839;mitochondrial transport;0.0105652642174223!GO:0030041;actin filament polymerization;0.0106246268126138!GO:0001527;microfibril;0.01121993826936!GO:0000139;Golgi membrane;0.0113709378311175!GO:0040008;regulation of growth;0.0114361465522295!GO:0016460;myosin II complex;0.0116818117579419!GO:0008610;lipid biosynthetic process;0.0117413563076518!GO:0030100;regulation of endocytosis;0.0117754339942754!GO:0019222;regulation of metabolic process;0.0118264127012567!GO:0030055;cell-matrix junction;0.0124246909711088!GO:0045792;negative regulation of cell size;0.0128152244379292!GO:0042692;muscle cell differentiation;0.0130067802320609!GO:0005637;nuclear inner membrane;0.0132587566943371!GO:0030518;steroid hormone receptor signaling pathway;0.0133389868063924!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0133721529428094!GO:0006892;post-Golgi vesicle-mediated transport;0.013427540651556!GO:0009081;branched chain family amino acid metabolic process;0.0135127720742383!GO:0008139;nuclear localization sequence binding;0.0136201384949119!GO:0007167;enzyme linked receptor protein signaling pathway;0.0136792516483861!GO:0030308;negative regulation of cell growth;0.0137536448179496!GO:0030934;anchoring collagen;0.014365513797948!GO:0006695;cholesterol biosynthetic process;0.0145905529090758!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0153366152366985!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0154484258178083!GO:0045047;protein targeting to ER;0.0154484258178083!GO:0030521;androgen receptor signaling pathway;0.0155665566228006!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0155665566228006!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0158241810549199!GO:0030659;cytoplasmic vesicle membrane;0.0158241810549199!GO:0008287;protein serine/threonine phosphatase complex;0.016000505062162!GO:0005924;cell-substrate adherens junction;0.0161553598525!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.01666032088597!GO:0043681;protein import into mitochondrion;0.0167711349346495!GO:0016491;oxidoreductase activity;0.0168314249319936!GO:0017022;myosin binding;0.0170135763475756!GO:0000278;mitotic cell cycle;0.0178226703092503!GO:0015631;tubulin binding;0.0178899346866237!GO:0000059;protein import into nucleus, docking;0.0178899346866237!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0181865399335193!GO:0006607;NLS-bearing substrate import into nucleus;0.0182250636522658!GO:0012506;vesicle membrane;0.0187072958478926!GO:0006364;rRNA processing;0.0187369661580108!GO:0005862;muscle thin filament tropomyosin;0.0187369661580108!GO:0019208;phosphatase regulator activity;0.0190503603915767!GO:0008312;7S RNA binding;0.0196709486256498!GO:0045445;myoblast differentiation;0.0203377537544655!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0213795189927088!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0213795189927088!GO:0007050;cell cycle arrest;0.0216775478070021!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0218338316682245!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0218338316682245!GO:0016072;rRNA metabolic process;0.0220618410689192!GO:0051146;striated muscle cell differentiation;0.0227089206185709!GO:0030674;protein binding, bridging;0.0227332374738829!GO:0043034;costamere;0.0230821558198708!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0234723764241363!GO:0007243;protein kinase cascade;0.0235159705830551!GO:0008064;regulation of actin polymerization and/or depolymerization;0.023612948137835!GO:0046314;phosphocreatine biosynthetic process;0.023612948137835!GO:0006603;phosphocreatine metabolic process;0.023612948137835!GO:0008047;enzyme activator activity;0.0239313695447871!GO:0005925;focal adhesion;0.0243862365315757!GO:0005099;Ras GTPase activator activity;0.0243862365315757!GO:0003711;transcription elongation regulator activity;0.02502590052774!GO:0005096;GTPase activator activity;0.0251764345018082!GO:0005869;dynactin complex;0.0252612844473978!GO:0006942;regulation of striated muscle contraction;0.0252781113473567!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0254991749797758!GO:0015399;primary active transmembrane transporter activity;0.0254991749797758!GO:0006950;response to stress;0.0262292966502467!GO:0030119;AP-type membrane coat adaptor complex;0.0262877668447112!GO:0030660;Golgi-associated vesicle membrane;0.0269364438402092!GO:0051259;protein oligomerization;0.0269891038488518!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0271585185628457!GO:0042585;germinal vesicle;0.0273484277418962!GO:0022415;viral reproductive process;0.0285342349752997!GO:0009967;positive regulation of signal transduction;0.0289482941252872!GO:0045045;secretory pathway;0.0291162673105438!GO:0006937;regulation of muscle contraction;0.0291808111506501!GO:0008147;structural constituent of bone;0.029797755290687!GO:0051260;protein homooligomerization;0.0298150459363678!GO:0048659;smooth muscle cell proliferation;0.0315922379946729!GO:0006633;fatty acid biosynthetic process;0.0319863449461603!GO:0051101;regulation of DNA binding;0.0320453686481626!GO:0044433;cytoplasmic vesicle part;0.0321191527586526!GO:0048154;S100 beta binding;0.032341581675269!GO:0042805;actinin binding;0.0334875840943984!GO:0031529;ruffle organization and biogenesis;0.0339998820380115!GO:0006635;fatty acid beta-oxidation;0.034284003828775!GO:0016408;C-acyltransferase activity;0.0350586404928103!GO:0001944;vasculature development;0.0358966751149513!GO:0045663;positive regulation of myoblast differentiation;0.0362432625355765!GO:0005584;collagen type I;0.0367782048603977!GO:0008286;insulin receptor signaling pathway;0.0371740522059111!GO:0019904;protein domain specific binding;0.0375231100542294!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0375700911776892!GO:0048660;regulation of smooth muscle cell proliferation;0.039258526950203!GO:0035035;histone acetyltransferase binding;0.0396923325754625!GO:0048041;focal adhesion formation;0.0398638484501654!GO:0008186;RNA-dependent ATPase activity;0.0411712902016213!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0416517665566435!GO:0030057;desmosome;0.0416517665566435!GO:0051049;regulation of transport;0.0419662468176033!GO:0050811;GABA receptor binding;0.042089312907636!GO:0044255;cellular lipid metabolic process;0.0422465577367289!GO:0006376;mRNA splice site selection;0.0424198785211724!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0424198785211724!GO:0003756;protein disulfide isomerase activity;0.0437809070893151!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0437809070893151!GO:0001568;blood vessel development;0.0438479302898508!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0444215219289619!GO:0051270;regulation of cell motility;0.0448239828328787!GO:0030032;lamellipodium biogenesis;0.0448239828328787!GO:0030131;clathrin adaptor complex;0.0449340705953563!GO:0005916;fascia adherens;0.0459722917628901!GO:0044448;cell cortex part;0.0459722917628901!GO:0016787;hydrolase activity;0.0460775046321881!GO:0055001;muscle cell development;0.0461202010060896!GO:0030239;myofibril assembly;0.0461202010060896!GO:0055002;striated muscle cell development;0.0461202010060896!GO:0006399;tRNA metabolic process;0.0461938280602255!GO:0030911;TPR domain binding;0.0469973426951832!GO:0005521;lamin binding;0.0475677175745766!GO:0005832;chaperonin-containing T-complex;0.0475677175745766!GO:0050681;androgen receptor binding;0.0477659372510021!GO:0005790;smooth endoplasmic reticulum;0.0477773692844156!GO:0007006;mitochondrial membrane organization and biogenesis;0.0480824241714239!GO:0030522;intracellular receptor-mediated signaling pathway;0.049324070839751
|sample_id=10065
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=TBP:4.85936731923;MEF2{A,B,C,D}:3.16765596813;IKZF2:3.0389512701;SPZ1:2.87070752438;ZNF384:2.85707313032;MYBL2:2.6711013797;NKX2-3_NKX2-5:2.5933832806;HOX{A4,D4}:2.540546428;ESR1:2.53755918743;SOX5:2.52320987789;FOXL1:2.48561232928;NR5A1,2:2.47180110637;TAL1_TCF{3,4,12}:2.44095410915;TOPORS:2.41871705473;TBX4,5:2.36981473838;NR1H4:2.27870683521;KLF4:2.1408937539;NKX2-1,4:2.10133865592;NANOG:2.05686941254;MAZ:1.96182958015;TFAP2{A,C}:1.9527502693;PAX6:1.9150028987;ZNF238:1.91070433567;FOXA2:1.90206484625;IKZF1:1.87675238773;NR6A1:1.8607983028;POU3F1..4:1.85369847887;BPTF:1.80542532936;GCM1,2:1.76950462778;XBP1:1.76782303607;FOXM1:1.69642749926;TGIF1:1.67073432021;MED-1{core}:1.64410926243;PDX1:1.64129870007;RBPJ:1.62863439701;FOXP1:1.62201876255;GLI1..3:1.61704982852;TEF:1.56695127553;SRF:1.53654929948;TLX2:1.53326722727;LHX3,4:1.52659301865;ZIC1..3:1.47317555487;MZF1:1.45630158223;GTF2I:1.43843830447;T:1.43390232793;GATA4:1.37729800367;FOXD3:1.37289858115;HIC1:1.3606935701;TEAD1:1.35375945286;ALX1:1.35077814836;RXRA_VDR{dimer}:1.33177437489;ZNF148:1.29261910074;HMGA1,2:1.28604773969;TFAP4:1.27853692845;GFI1:1.26829511252;TFCP2:1.25190652646;SMAD1..7,9:1.23540123324;NKX6-1,2:1.21567909653;SP1:1.21001390344;TLX1..3_NFIC{dimer}:1.18340728907;SNAI1..3:1.15161547268;PRDM1:1.13860005807;PATZ1:1.13712050709;FOXO1,3,4:1.10068562189;ATF2:1.09424966789;GTF2A1,2:1.09279682298;ALX4:1.09278940304;PITX1..3:1.03081225474;MYFfamily:1.02380752346;MTF1:1.022303048;EP300:1.01995589878;POU1F1:1.01808438205;NKX3-2:1.01738029835;EGR1..3:0.986473886241;POU6F1:0.978883255923;LMO2:0.968080236795;XCPE1{core}:0.922259691286;FOXQ1:0.910463433104;HSF1,2:0.874353687105;GFI1B:0.871966468025;ZEB1:0.861969148493;MAFB:0.858787479226;ATF6:0.839507675235;EVI1:0.833539970951;DBP:0.832035596753;POU5F1:0.815815085871;NFATC1..3:0.812967195972;UFEwm:0.809747625776;HOX{A5,B5}:0.793261973255;NFE2L1:0.783240464859;PAX5:0.78137540367;NHLH1,2:0.747706146761;SOX{8,9,10}:0.744750663574;CDC5L:0.743691546752;MTE{core}:0.724236245553;VSX1,2:0.694840042734;PAX4:0.688456650297;GZF1:0.670821484248;TFAP2B:0.660511235643;GATA6:0.630983028747;MYOD1:0.628301967265;BREu{core}:0.61158183788;RREB1:0.599621870497;AR:0.591580075;NKX3-1:0.589110238399;HBP1_HMGB_SSRP1_UBTF:0.585167012446;HMX1:0.580812204835;AIRE:0.491418132532;YY1:0.490553234756;FOX{D1,D2}:0.438201896187;NANOG{mouse}:0.432643738621;HOX{A6,A7,B6,B7}:0.384038724335;FOXP3:0.373917643002;PAX1,9:0.332050126719;SOX17:0.317231825147;ZFP161:0.311789252458;STAT5{A,B}:0.306452801982;TP53:0.294214393692;EBF1:0.290487738946;NR3C1:0.28945670032;SOX2:0.284811020773;ESRRA:0.281163753559;IRF7:0.275994110803;CUX2:0.215768324357;EN1,2:0.209923135498;FOX{F1,F2,J1}:0.132167571719;ZBTB6:0.13022926233;HNF4A_NR2F1,2:0.117192060729;PBX1:0.114790681338;REST:0.093412427572;HAND1,2:0.0852958060605;NFIX:0.0850936745881;LEF1_TCF7_TCF7L1,2:0.0811450539986;STAT2,4,6:0.0223422080539;ZNF423:-0.00507176732639;HNF1A:-0.00680752042297;FOXN1:-0.0641455958645;ZNF143:-0.0941912226869;RFX2..5_RFXANK_RFXAP:-0.124518271836;RORA:-0.15087740148;NFY{A,B,C}:-0.155465982061;CDX1,2,4:-0.20032590567;STAT1,3:-0.220828620159;FOX{I1,J2}:-0.23154331391;SREBF1,2:-0.235082906181;ATF4:-0.242664622276;E2F1..5:-0.248522132826;IRF1,2:-0.264369607724;FOSL2:-0.265731244509;RXR{A,B,G}:-0.283299697075;JUN:-0.301283488047;NRF1:-0.314093914733;SPI1:-0.316939704332;SPIB:-0.335582183305;PRRX1,2:-0.351706710947;OCT4_SOX2{dimer}:-0.372159917643;ZBTB16:-0.3733445808;ETS1,2:-0.374684040998;PAX3,7:-0.384833113843;ARID5B:-0.389288226335;HLF:-0.447036203864;ELF1,2,4:-0.447821473637;RFX1:-0.470907712975;PAX2:-0.485774781248;NFIL3:-0.489549725728;DMAP1_NCOR{1,2}_SMARC:-0.54281328297;FOS_FOS{B,L1}_JUN{B,D}:-0.546288354607;CEBPA,B_DDIT3:-0.58617247714;NFKB1_REL_RELA:-0.593821792989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.612902716521;HES1:-0.61387534175;RUNX1..3:-0.63571163083;POU2F1..3:-0.701223531605;TFDP1:-0.71165476877;ATF5_CREB3:-0.721346868008;CREB1:-0.736115095976;HOXA9_MEIS1:-0.741103534406;ADNP_IRX_SIX_ZHX:-0.795428127847;ONECUT1,2:-0.798003649324;bHLH_family:-0.837980323619;AHR_ARNT_ARNT2:-0.845217196631;BACH2:-0.950579019803;MYB:-0.96713648506;PAX8:-0.971271789131;NFE2:-0.98909454085;NFE2L2:-1.03977253337;PPARG:-1.16389431307;NKX2-2,8:-1.20958215534;HIF1A:-1.2298778421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.23180323637;CRX:-1.26982266656;ELK1,4_GABP{A,B1}:-1.28906762324
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10065-101I2;search_select_hide=table117:FF:10065-101I2
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:skin, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11774
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage26 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA507299
catalog numberCat:RtHFN: Skin
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005324
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11774 CAGE DRX008723 DRR009595
Accession ID Hg19

Library idBAMCTSS
CNhs11774 DRZ001020 DRZ002405
Accession ID Hg38

Library idBAMCTSS
CNhs11774 DRZ012370 DRZ013755
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0556
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.043
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.39
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.295
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.73
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.295
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0381
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.163
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0324
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.172
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.415
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.172
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.111
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0.172
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.295
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous1.411
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.283
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.39
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.469
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.126
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.172
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.123
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.197
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.295
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.172
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.172
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00988
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.121
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0847
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.535
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.39
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.309
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.172
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.129
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.343
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.39
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.102
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.172
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11774

Jaspar motifP-value
MA0002.27.16818e-5
MA0003.10.999
MA0004.10.00628
MA0006.10.577
MA0007.10.0713
MA0009.10.259
MA0014.10.201
MA0017.10.119
MA0018.20.063
MA0019.10.783
MA0024.10.879
MA0025.10.0122
MA0027.10.475
MA0028.11.10923e-6
MA0029.10.285
MA0030.10.882
MA0031.10.512
MA0035.20.125
MA0038.10.684
MA0039.20.414
MA0040.10.545
MA0041.10.583
MA0042.10.719
MA0043.10.00886
MA0046.10.107
MA0047.20.6
MA0048.10.103
MA0050.18.58037e-4
MA0051.10.00507
MA0052.14.8915e-13
MA0055.10.019
MA0057.10.818
MA0058.16.12061e-4
MA0059.10.00105
MA0060.10.142
MA0061.17.62777e-8
MA0062.21.08599e-13
MA0065.20.036
MA0066.10.12
MA0067.10.00897
MA0068.13.5306e-4
MA0069.10.866
MA0070.10.428
MA0071.10.491
MA0072.10.23
MA0073.10.566
MA0074.10.304
MA0076.17.46567e-8
MA0077.10.752
MA0078.10.422
MA0079.20.431
MA0080.23.97192e-8
MA0081.10.0052
MA0083.10.2
MA0084.10.0298
MA0087.10.0883
MA0088.10.0356
MA0090.10.0519
MA0091.10.281
MA0092.10.724
MA0093.10.00685
MA0099.22.50557e-24
MA0100.10.205
MA0101.18.68351e-7
MA0102.20.0525
MA0103.10.935
MA0104.21.69086e-4
MA0105.14.46982e-9
MA0106.10.135
MA0107.11.35805e-6
MA0108.24.68908e-23
MA0111.10.595
MA0112.20.596
MA0113.10.451
MA0114.10.0332
MA0115.10.0922
MA0116.11.18645e-4
MA0117.10.146
MA0119.10.72
MA0122.10.634
MA0124.10.667
MA0125.10.365
MA0131.10.455
MA0135.10.37
MA0136.13.49468e-13
MA0137.20.859
MA0138.20.0428
MA0139.10.00871
MA0140.10.022
MA0141.10.051
MA0142.10.0432
MA0143.10.413
MA0144.10.644
MA0145.10.359
MA0146.10.239
MA0147.18.41587e-5
MA0148.10.786
MA0149.10.0743
MA0150.18.50829e-13
MA0152.10.022
MA0153.10.663
MA0154.10.015
MA0155.10.177
MA0156.13.10573e-14
MA0157.10.304
MA0159.10.114
MA0160.10.00512
MA0162.10.7
MA0163.10.0027
MA0164.10.504
MA0258.10.825
MA0259.10.0308



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11774

Novel motifP-value
10.0893
100.116
1000.485
1010.917
1020.348
1030.0738
1040.781
1050.84
1060.906
1070.235
1080.454
1090.00175
110.0858
1100.266
1110.153
1120.714
1130.00362
1140.0398
1150.0425
1160.801
1170.00496
1180.0201
1190.644
120.383
1200.664
1210.851
1220.0393
1230.837
1240.328
1250.347
1260.79
1270.209
1280.847
1290.904
130.299
1300.99
1310.911
1320.0351
1330.302
1340.506
1350.737
1360.17
1370.498
1380.485
1390.238
140.47
1400.479
1410.517
1420.735
1430.00189
1440.991
1450.603
1460.528
1470.238
1480.292
1490.696
150.0693
1500.413
1510.899
1520.732
1530.391
1540.538
1550.379
1560.296
1570.456
1580.0414
1590.771
160.651
1600.867
1610.393
1620.0611
1630.29
1640.109
1650.481
1660.0269
1670.0348
1680.673
1690.304
170.487
180.0374
190.398
20.0949
200.0337
210.811
220.582
230.48
240.0782
250.472
260.432
270.619
280.841
290.0246
30.259
300.0259
310.892
326.96111e-8
330.21
340.434
350.316
360.036
370.041
380.536
390.133
40.592
400.0519
410.0896
420.219
430.177
440.841
450.553
460.314
470.136
480.26
490.129
50.416
500.612
510.567
520.378
530.579
540.987
550.423
560.489
570.927
580.481
590.83
60.623
600.893
610.0599
620.535
630.78
640.297
650.956
660.0314
670.165
680.672
690.956
70.504
700.23
710.053
720.523
730.0589
740.302
750.00768
760.0252
770.677
780.896
790.979
80.336
800.262
810.924
820.504
830.683
840.697
850.764
860.27
870.00325
880.665
890.833
90.875
900.097
910.139
920.896
930.614
940.075
950.00531
960.508
970.956
980.226
990.07



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11774


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010065 (human skin - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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