FF:10065-101I2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005324 | ||
|accession_numbers=CAGE;DRX008723;DRR009595;DRZ001020;DRZ002405;DRZ012370;DRZ013755 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000014,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0007029,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010065 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skin%252c%2520fetal%252c%2520donor1.CNhs11774.10065-101I2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10065-101I2 | |id=FF:10065-101I2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010065 | ||
|is_obsolete= | |||
|library_id=CNhs11774 | |||
|library_id_phase_based=2:CNhs11774 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10065 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10065 | |||
|name=skin, fetal, donor1 | |name=skin, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11774,LSID820,release009,COMPLETED | |profile_hcage=CNhs11774,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,1.25526972457393,0,0.0116163067092125,0.171934336795599,0.115595362775484,0.72752409004506,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.073976440527541,0,0,0.731212789605774,0,0,0,0,0,0,0,0,0,0,0,0,-0.0599325485682135,0.171934336795599,0,0,0,0,0,0,0,0.061752147284965,0,0.0392261091682452,0,0.29477959567822,0.390428660981575,0.145272721246632,0,0.0749419755529935,0,0,0.371423609472649,0,0,0,0,0,0,0,0,0.171934336795599,0,0,0.0859671683977995,0,0,0,0,0.0132103302282527,0,0,0,0.0857933470063872,0.0859671683977995,0,0.116472812190231,0.0908787522411547,0.407692369152263,0,0.0202247059865102,0.15188724533288,0.0221595635410405,0,0.171934336795599,0,0,0.196744244440513,0.441831813962919,0,0,0,0,0,0,0.29477959567822,0,0,0,0,0,0,0,0,0,0,-0.0104064255246617,0.171934336795599,0,0,0.0815986036394363,0.203572869239135,0,0,0.104070844271537,0,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Skin | |rna_catalog_number=Cat:RtHFN: Skin | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.31569884321965e-212!GO:0005737;cytoplasm;4.95109306495147e-174!GO:0043226;organelle;2.85234975591911e-159!GO:0043229;intracellular organelle;5.90267806332396e-159!GO:0044422;organelle part;4.00324041220173e-115!GO:0044446;intracellular organelle part;5.57055351391626e-114!GO:0043231;intracellular membrane-bound organelle;7.68671524085898e-113!GO:0043227;membrane-bound organelle;9.2139032965447e-113!GO:0044444;cytoplasmic part;4.8399618831143e-111!GO:0005515;protein binding;4.42989231840342e-98!GO:0032991;macromolecular complex;1.49961246013545e-70!GO:0043228;non-membrane-bound organelle;3.38454353407911e-55!GO:0043232;intracellular non-membrane-bound organelle;3.38454353407911e-55!GO:0030529;ribonucleoprotein complex;2.04227398616185e-49!GO:0044238;primary metabolic process;2.62314604541269e-49!GO:0044237;cellular metabolic process;6.46042131912739e-47!GO:0043233;organelle lumen;6.20425539574094e-46!GO:0031974;membrane-enclosed lumen;6.20425539574094e-46!GO:0016043;cellular component organization and biogenesis;6.65866769773582e-46!GO:0043170;macromolecule metabolic process;1.07190865172061e-45!GO:0003723;RNA binding;6.05970751991994e-42!GO:0044428;nuclear part;8.00747729527077e-42!GO:0005634;nucleus;1.58806358865452e-40!GO:0043234;protein complex;2.48839061961872e-39!GO:0005739;mitochondrion;2.6351963311099e-39!GO:0019538;protein metabolic process;7.69221119550701e-36!GO:0031090;organelle membrane;8.42159829092314e-32!GO:0005829;cytosol;1.31579825463719e-31!GO:0005840;ribosome;5.33796983508577e-31!GO:0044429;mitochondrial part;1.59433801831676e-30!GO:0044260;cellular macromolecule metabolic process;7.61698178459058e-30!GO:0033036;macromolecule localization;9.23687777583717e-30!GO:0031967;organelle envelope;1.50465317427842e-29!GO:0031975;envelope;2.10220339376162e-29!GO:0015031;protein transport;9.75536247923879e-29!GO:0044267;cellular protein metabolic process;1.31549589839349e-28!GO:0003735;structural constituent of ribosome;7.41482011325985e-28!GO:0006412;translation;9.48243149763113e-28!GO:0008104;protein localization;1.75711639217252e-27!GO:0065003;macromolecular complex assembly;1.85923221159149e-27!GO:0022607;cellular component assembly;4.1340019570199e-27!GO:0016071;mRNA metabolic process;7.56126351977763e-27!GO:0045184;establishment of protein localization;7.85155505533218e-27!GO:0046907;intracellular transport;1.90055291759588e-26!GO:0008380;RNA splicing;9.22700741273768e-26!GO:0006396;RNA processing;1.64680148002375e-25!GO:0005856;cytoskeleton;1.87226459168034e-25!GO:0033279;ribosomal subunit;5.45732552985327e-25!GO:0031981;nuclear lumen;1.34553824984663e-24!GO:0006996;organelle organization and biogenesis;5.72928374648863e-24!GO:0006397;mRNA processing;2.47706226533711e-22!GO:0043283;biopolymer metabolic process;3.54548945515418e-21!GO:0006886;intracellular protein transport;3.97167574513219e-21!GO:0010467;gene expression;5.43339616252912e-21!GO:0044249;cellular biosynthetic process;9.91578019292072e-21!GO:0019866;organelle inner membrane;1.03390309264296e-20!GO:0009058;biosynthetic process;1.10680100382293e-20!GO:0005740;mitochondrial envelope;2.06928270910872e-20!GO:0048770;pigment granule;2.53355355433651e-20!GO:0042470;melanosome;2.53355355433651e-20!GO:0031966;mitochondrial membrane;2.53355355433651e-20!GO:0008092;cytoskeletal protein binding;2.6966425592939e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.45017905931602e-20!GO:0009059;macromolecule biosynthetic process;1.57346802766103e-19!GO:0005743;mitochondrial inner membrane;5.83145882282991e-19!GO:0006119;oxidative phosphorylation;2.94110613631032e-18!GO:0044445;cytosolic part;3.75187810384872e-18!GO:0044455;mitochondrial membrane part;3.90237926577881e-17!GO:0005783;endoplasmic reticulum;6.76914517609475e-17!GO:0008134;transcription factor binding;7.68853534238878e-17!GO:0005681;spliceosome;8.14986231185369e-17!GO:0051641;cellular localization;1.54726719338506e-16!GO:0015629;actin cytoskeleton;1.87966895103004e-16!GO:0051649;establishment of cellular localization;2.31704640568022e-16!GO:0005654;nucleoplasm;3.23898277352825e-16!GO:0005746;mitochondrial respiratory chain;7.98640468233315e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.19598706423703e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.38220042954874e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.06491231354066e-13!GO:0003954;NADH dehydrogenase activity;1.06491231354066e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.06491231354066e-13!GO:0031980;mitochondrial lumen;4.30203016643615e-13!GO:0005759;mitochondrial matrix;4.30203016643615e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.08324535171704e-13!GO:0015934;large ribosomal subunit;5.12349345223309e-13!GO:0044451;nucleoplasm part;5.57067582794681e-13!GO:0016192;vesicle-mediated transport;5.90590566223199e-13!GO:0015935;small ribosomal subunit;6.06926720955194e-13!GO:0044449;contractile fiber part;6.93241822905529e-13!GO:0022618;protein-RNA complex assembly;6.97610535426741e-13!GO:0003779;actin binding;7.78392498280096e-13!GO:0044430;cytoskeletal part;9.26769769543742e-13!GO:0012505;endomembrane system;1.51288080404469e-12!GO:0000166;nucleotide binding;3.25550768406439e-12!GO:0048193;Golgi vesicle transport;4.95000731331674e-12!GO:0048523;negative regulation of cellular process;5.03448306335072e-12!GO:0043292;contractile fiber;6.02245080070599e-12!GO:0006461;protein complex assembly;8.30601926169481e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.16414259601365e-11!GO:0045271;respiratory chain complex I;1.16414259601365e-11!GO:0005747;mitochondrial respiratory chain complex I;1.16414259601365e-11!GO:0006457;protein folding;1.35406993523104e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.44843930689115e-11!GO:0042773;ATP synthesis coupled electron transport;1.44843930689115e-11!GO:0006366;transcription from RNA polymerase II promoter;1.9030123923309e-11!GO:0008307;structural constituent of muscle;2.74602397036387e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.31625265876834e-11!GO:0044432;endoplasmic reticulum part;4.47738717002182e-11!GO:0005794;Golgi apparatus;4.90580549655845e-11!GO:0030029;actin filament-based process;6.60084799981747e-11!GO:0048519;negative regulation of biological process;7.60805606286436e-11!GO:0008135;translation factor activity, nucleic acid binding;8.52471774683073e-11!GO:0006605;protein targeting;1.04785047933834e-10!GO:0016462;pyrophosphatase activity;1.59978760706823e-10!GO:0006259;DNA metabolic process;1.60655408534999e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.77064499326671e-10!GO:0003712;transcription cofactor activity;1.77310712761307e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.78385584148272e-10!GO:0017111;nucleoside-triphosphatase activity;1.9291515179428e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;2.06498122682921e-10!GO:0030016;myofibril;2.65947085664165e-10!GO:0016874;ligase activity;4.5138266517154e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.5411557058315e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;5.3386536390293e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.50149248769765e-10!GO:0005635;nuclear envelope;5.78846531564798e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.47896578223417e-10!GO:0044257;cellular protein catabolic process;7.40883197115442e-10!GO:0019941;modification-dependent protein catabolic process;9.46604971588253e-10!GO:0043632;modification-dependent macromolecule catabolic process;9.46604971588253e-10!GO:0008565;protein transporter activity;2.11533591530555e-09!GO:0006512;ubiquitin cycle;2.48318049416635e-09!GO:0044265;cellular macromolecule catabolic process;2.6771611375494e-09!GO:0003676;nucleic acid binding;3.3206345858811e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.3206345858811e-09!GO:0031965;nuclear membrane;3.81918050749299e-09!GO:0051186;cofactor metabolic process;4.48750265705994e-09!GO:0006913;nucleocytoplasmic transport;5.28476767310152e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.90490703992976e-09!GO:0030017;sarcomere;6.98941990445651e-09!GO:0007010;cytoskeleton organization and biogenesis;9.05795718443661e-09!GO:0005788;endoplasmic reticulum lumen;9.47710150399069e-09!GO:0051169;nuclear transport;1.03513143275523e-08!GO:0006446;regulation of translational initiation;1.075349167595e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.14982089918327e-08!GO:0000375;RNA splicing, via transesterification reactions;1.14982089918327e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.14982089918327e-08!GO:0005761;mitochondrial ribosome;1.19138176361641e-08!GO:0000313;organellar ribosome;1.19138176361641e-08!GO:0005793;ER-Golgi intermediate compartment;1.1974380109935e-08!GO:0007049;cell cycle;1.2169472593015e-08!GO:0016070;RNA metabolic process;1.2169472593015e-08!GO:0030163;protein catabolic process;1.34043806320593e-08!GO:0016564;transcription repressor activity;1.43629884934539e-08!GO:0051082;unfolded protein binding;1.66574017901215e-08!GO:0050789;regulation of biological process;1.95934069363767e-08!GO:0005730;nucleolus;2.10091842743182e-08!GO:0043285;biopolymer catabolic process;2.22645915116064e-08!GO:0016481;negative regulation of transcription;2.49077657075039e-08!GO:0016604;nuclear body;2.8654906307603e-08!GO:0031988;membrane-bound vesicle;3.67501415372859e-08!GO:0043412;biopolymer modification;3.71548036215331e-08!GO:0032553;ribonucleotide binding;4.12450981274839e-08!GO:0032555;purine ribonucleotide binding;4.12450981274839e-08!GO:0044420;extracellular matrix part;4.1551690173232e-08!GO:0031982;vesicle;4.75081980032749e-08!GO:0009060;aerobic respiration;4.75927653336803e-08!GO:0043687;post-translational protein modification;4.87379713317684e-08!GO:0050794;regulation of cellular process;5.19885114817864e-08!GO:0003743;translation initiation factor activity;5.22260823867841e-08!GO:0006413;translational initiation;5.36120124545852e-08!GO:0016023;cytoplasmic membrane-bound vesicle;5.60349244945992e-08!GO:0031324;negative regulation of cellular metabolic process;6.48165835624621e-08!GO:0045333;cellular respiration;7.15694587360237e-08!GO:0031410;cytoplasmic vesicle;8.08387633377679e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05350733221975e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.31716374146156e-07!GO:0017076;purine nucleotide binding;1.52231154105622e-07!GO:0009892;negative regulation of metabolic process;1.55027510530545e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.96690036824664e-07!GO:0009057;macromolecule catabolic process;2.14614208951927e-07!GO:0006464;protein modification process;2.19649343359041e-07!GO:0016607;nuclear speck;2.37551655995885e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.91073682009035e-07!GO:0007517;muscle development;3.24741213366184e-07!GO:0031252;leading edge;4.18192797798568e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.2304816108713e-07!GO:0019829;cation-transporting ATPase activity;5.10871353596107e-07!GO:0017038;protein import;5.12022782788165e-07!GO:0006099;tricarboxylic acid cycle;6.27827262440663e-07!GO:0046356;acetyl-CoA catabolic process;6.27827262440663e-07!GO:0008639;small protein conjugating enzyme activity;7.88987211381131e-07!GO:0004842;ubiquitin-protein ligase activity;8.03557069225165e-07!GO:0006732;coenzyme metabolic process;8.16983126808666e-07!GO:0044248;cellular catabolic process;8.26607867653245e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.26607867653245e-07!GO:0030120;vesicle coat;8.74519641856667e-07!GO:0030662;coated vesicle membrane;8.74519641856667e-07!GO:0044453;nuclear membrane part;1.02128302839739e-06!GO:0045892;negative regulation of transcription, DNA-dependent;1.27794825949085e-06!GO:0048475;coated membrane;1.30218903198008e-06!GO:0030117;membrane coat;1.30218903198008e-06!GO:0006323;DNA packaging;1.49177310433403e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.78896165028208e-06!GO:0012501;programmed cell death;2.20448047610492e-06!GO:0009109;coenzyme catabolic process;2.41165049909674e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.68782385438634e-06!GO:0006084;acetyl-CoA metabolic process;2.85565262199124e-06!GO:0006915;apoptosis;2.8779342047726e-06!GO:0005581;collagen;3.27335676408358e-06!GO:0051276;chromosome organization and biogenesis;3.39628732855176e-06!GO:0006163;purine nucleotide metabolic process;3.59789985427939e-06!GO:0019787;small conjugating protein ligase activity;3.63404499095771e-06!GO:0045786;negative regulation of progression through cell cycle;3.67407256233792e-06!GO:0009055;electron carrier activity;3.67913124767704e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.85139299314467e-06!GO:0007398;ectoderm development;3.93376581723194e-06!GO:0005789;endoplasmic reticulum membrane;4.08679230670295e-06!GO:0015986;ATP synthesis coupled proton transport;4.39788803830106e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.39788803830106e-06!GO:0009150;purine ribonucleotide metabolic process;4.55173854381922e-06!GO:0006793;phosphorus metabolic process;5.18672956130255e-06!GO:0006796;phosphate metabolic process;5.18672956130255e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.39851279102947e-06!GO:0016887;ATPase activity;6.24678295693095e-06!GO:0005865;striated muscle thin filament;6.41434697657571e-06!GO:0000074;regulation of progression through cell cycle;6.54371567098415e-06!GO:0051726;regulation of cell cycle;6.81814257804177e-06!GO:0005524;ATP binding;6.90010236280598e-06!GO:0009259;ribonucleotide metabolic process;7.44920608544136e-06!GO:0051187;cofactor catabolic process;7.45546033540513e-06!GO:0032559;adenyl ribonucleotide binding;7.58213008460347e-06!GO:0042802;identical protein binding;7.6189684226384e-06!GO:0008219;cell death;8.00095353546844e-06!GO:0016265;death;8.00095353546844e-06!GO:0005768;endosome;8.8415242002209e-06!GO:0006606;protein import into nucleus;8.91188976021026e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.50733647977188e-06!GO:0003714;transcription corepressor activity;1.03098417286346e-05!GO:0008544;epidermis development;1.1694227420365e-05!GO:0005798;Golgi-associated vesicle;1.23522360664533e-05!GO:0016563;transcription activator activity;1.28929368354247e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.44263757511156e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.44263757511156e-05!GO:0051246;regulation of protein metabolic process;1.51042099454252e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.53435143559362e-05!GO:0005583;fibrillar collagen;1.5756102277609e-05!GO:0003713;transcription coactivator activity;1.57897452420064e-05!GO:0046034;ATP metabolic process;1.70601914223486e-05!GO:0051170;nuclear import;1.72880416196303e-05!GO:0009141;nucleoside triphosphate metabolic process;1.7339131479447e-05!GO:0043566;structure-specific DNA binding;1.99442199804106e-05!GO:0045259;proton-transporting ATP synthase complex;2.42258295437408e-05!GO:0042623;ATPase activity, coupled;2.443907841501e-05!GO:0030554;adenyl nucleotide binding;2.7681133597675e-05!GO:0008361;regulation of cell size;2.97666085530281e-05!GO:0022402;cell cycle process;3.00650656697101e-05!GO:0007264;small GTPase mediated signal transduction;3.20479524009648e-05!GO:0016049;cell growth;3.92801469184844e-05!GO:0016310;phosphorylation;4.00156066120874e-05!GO:0000245;spliceosome assembly;4.02646756851343e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.13881644924113e-05!GO:0003697;single-stranded DNA binding;4.37067102775017e-05!GO:0006164;purine nucleotide biosynthetic process;4.55984503976302e-05!GO:0065007;biological regulation;4.59326596620907e-05!GO:0005643;nuclear pore;4.66064646698695e-05!GO:0006613;cotranslational protein targeting to membrane;5.65017200984139e-05!GO:0009152;purine ribonucleotide biosynthetic process;6.12868641915852e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.2248300344877e-05!GO:0032446;protein modification by small protein conjugation;6.2248300344877e-05!GO:0003924;GTPase activity;7.38653108638062e-05!GO:0030532;small nuclear ribonucleoprotein complex;8.13615168702713e-05!GO:0019899;enzyme binding;0.000110199892334034!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000110199892334034!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000110199892334034!GO:0009142;nucleoside triphosphate biosynthetic process;0.000117315131053014!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000117315131053014!GO:0006333;chromatin assembly or disassembly;0.000120451675037859!GO:0006974;response to DNA damage stimulus;0.000121018256566151!GO:0006754;ATP biosynthetic process;0.000126307064935955!GO:0006753;nucleoside phosphate metabolic process;0.000126307064935955!GO:0009260;ribonucleotide biosynthetic process;0.000133264667168993!GO:0016881;acid-amino acid ligase activity;0.000146002149910451!GO:0016567;protein ubiquitination;0.00014989162798685!GO:0009056;catabolic process;0.000164463792684036!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000169851685395824!GO:0065004;protein-DNA complex assembly;0.000170056056730312!GO:0051427;hormone receptor binding;0.000175282111039243!GO:0050657;nucleic acid transport;0.000177813909260794!GO:0051236;establishment of RNA localization;0.000177813909260794!GO:0050658;RNA transport;0.000177813909260794!GO:0006916;anti-apoptosis;0.000180720969339505!GO:0065002;intracellular protein transport across a membrane;0.000202057540129566!GO:0006403;RNA localization;0.00020679676295696!GO:0006941;striated muscle contraction;0.000207226619366911!GO:0048471;perinuclear region of cytoplasm;0.000207514189323234!GO:0000151;ubiquitin ligase complex;0.000227348029160994!GO:0007265;Ras protein signal transduction;0.000240123873974475!GO:0016044;membrane organization and biogenesis;0.000240846554455965!GO:0030133;transport vesicle;0.000246505900075313!GO:0022890;inorganic cation transmembrane transporter activity;0.000272152698378622!GO:0016568;chromatin modification;0.000276637108900764!GO:0005667;transcription factor complex;0.000305743914388673!GO:0035257;nuclear hormone receptor binding;0.000305743914388673!GO:0005525;GTP binding;0.000311329868912059!GO:0005912;adherens junction;0.000316073586557792!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000327245129491029!GO:0005770;late endosome;0.000342091828719316!GO:0005083;small GTPase regulator activity;0.000371297807108317!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000400716505030683!GO:0007005;mitochondrion organization and biogenesis;0.00043269432192208!GO:0030027;lamellipodium;0.00045369674431027!GO:0000785;chromatin;0.000494892256626438!GO:0043623;cellular protein complex assembly;0.000533818060197784!GO:0006260;DNA replication;0.000540262336240597!GO:0005791;rough endoplasmic reticulum;0.000552763007935831!GO:0009719;response to endogenous stimulus;0.000576622995318557!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000589114749485459!GO:0004812;aminoacyl-tRNA ligase activity;0.000589114749485459!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000589114749485459!GO:0043069;negative regulation of programmed cell death;0.000596759556641792!GO:0044431;Golgi apparatus part;0.000656683978277781!GO:0042254;ribosome biogenesis and assembly;0.000656694257266234!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000665286031006121!GO:0043066;negative regulation of apoptosis;0.000665286031006121!GO:0045893;positive regulation of transcription, DNA-dependent;0.000727153762715019!GO:0003690;double-stranded DNA binding;0.00072896619587156!GO:0005839;proteasome core complex (sensu Eukaryota);0.000734775080106164!GO:0005200;structural constituent of cytoskeleton;0.000768756578312415!GO:0051789;response to protein stimulus;0.000845219579171222!GO:0006986;response to unfolded protein;0.000845219579171222!GO:0005773;vacuole;0.000894576445763792!GO:0006334;nucleosome assembly;0.000922946101408086!GO:0005769;early endosome;0.000922946101408086!GO:0016859;cis-trans isomerase activity;0.000924968783636485!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000951408124487605!GO:0005523;tropomyosin binding;0.000963735183309612!GO:0001558;regulation of cell growth;0.000975061023742909!GO:0005578;proteinaceous extracellular matrix;0.000990560978301586!GO:0001725;stress fiber;0.00100697221277331!GO:0032432;actin filament bundle;0.00100697221277331!GO:0008250;oligosaccharyl transferase complex;0.00100955641819451!GO:0044440;endosomal part;0.00100955641819451!GO:0010008;endosome membrane;0.00100955641819451!GO:0043038;amino acid activation;0.00101740227916423!GO:0006418;tRNA aminoacylation for protein translation;0.00101740227916423!GO:0043039;tRNA aminoacylation;0.00101740227916423!GO:0016197;endosome transport;0.0010207075573616!GO:0005694;chromosome;0.00107838861318448!GO:0005762;mitochondrial large ribosomal subunit;0.00110673189789287!GO:0000315;organellar large ribosomal subunit;0.00110673189789287!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00111359769061423!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00111359769061423!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00111359769061423!GO:0051188;cofactor biosynthetic process;0.00111903287830013!GO:0046930;pore complex;0.00111903287830013!GO:0006091;generation of precursor metabolites and energy;0.00113696218511158!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00113868000491498!GO:0046983;protein dimerization activity;0.00115710814656336!GO:0048522;positive regulation of cellular process;0.00116128660987613!GO:0030663;COPI coated vesicle membrane;0.00116201067584933!GO:0030126;COPI vesicle coat;0.00116201067584933!GO:0004576;oligosaccharyl transferase activity;0.00116702381539171!GO:0001726;ruffle;0.00116702381539171!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00118888624278593!GO:0030867;rough endoplasmic reticulum membrane;0.00118956525331527!GO:0031589;cell-substrate adhesion;0.00119134795935124!GO:0004386;helicase activity;0.00121906706646793!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00129501960297634!GO:0032561;guanyl ribonucleotide binding;0.00130398468521993!GO:0019001;guanyl nucleotide binding;0.00130398468521993!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0013320999381097!GO:0015630;microtubule cytoskeleton;0.0013373777009851!GO:0005813;centrosome;0.00137282907055215!GO:0033673;negative regulation of kinase activity;0.00139062962047685!GO:0006469;negative regulation of protein kinase activity;0.00139062962047685!GO:0000323;lytic vacuole;0.00145367503177018!GO:0005764;lysosome;0.00145367503177018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00151435674401956!GO:0015002;heme-copper terminal oxidase activity;0.00151435674401956!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00151435674401956!GO:0004129;cytochrome-c oxidase activity;0.00151435674401956!GO:0006979;response to oxidative stress;0.00155168456500864!GO:0051028;mRNA transport;0.00155208413081789!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00167503260506906!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00175057795473942!GO:0006281;DNA repair;0.00175500528448947!GO:0051920;peroxiredoxin activity;0.00182313139279954!GO:0051287;NAD binding;0.00185476781048507!GO:0007160;cell-matrix adhesion;0.00187590538363737!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00194271669352509!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00198007849734716!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00201531186091259!GO:0007266;Rho protein signal transduction;0.00202668869141501!GO:0004298;threonine endopeptidase activity;0.00206904016279448!GO:0005905;coated pit;0.00209915334872034!GO:0005586;collagen type III;0.00210467643410686!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00217478583737061!GO:0045941;positive regulation of transcription;0.00227119238667396!GO:0031497;chromatin assembly;0.00229396727339744!GO:0045111;intermediate filament cytoskeleton;0.00248730813577463!GO:0005882;intermediate filament;0.00248730813577463!GO:0008654;phospholipid biosynthetic process;0.00254001996418152!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00270794507066496!GO:0033043;regulation of organelle organization and biogenesis;0.00270794507066496!GO:0005048;signal sequence binding;0.0028003909593741!GO:0005885;Arp2/3 protein complex;0.00282917745581732!GO:0051252;regulation of RNA metabolic process;0.00282917745581732!GO:0005861;troponin complex;0.00295228378345888!GO:0031968;organelle outer membrane;0.00298815927491484!GO:0006897;endocytosis;0.00300034027271122!GO:0010324;membrane invagination;0.00300034027271122!GO:0030018;Z disc;0.00305889638951533!GO:0006414;translational elongation;0.00306111130709127!GO:0051348;negative regulation of transferase activity;0.00315577374261159!GO:0005604;basement membrane;0.00347513757856511!GO:0031674;I band;0.00350912479500097!GO:0014706;striated muscle development;0.00355031687169669!GO:0006752;group transfer coenzyme metabolic process;0.00357048498653028!GO:0009966;regulation of signal transduction;0.00361733260368744!GO:0042981;regulation of apoptosis;0.00365325204436666!GO:0019867;outer membrane;0.00378668644257077!GO:0005741;mitochondrial outer membrane;0.00397584835415594!GO:0005938;cell cortex;0.00412737907763421!GO:0008026;ATP-dependent helicase activity;0.00418592607989183!GO:0008154;actin polymerization and/or depolymerization;0.00445723133831978!GO:0030031;cell projection biogenesis;0.00453600117239457!GO:0005815;microtubule organizing center;0.00457052565522322!GO:0006612;protein targeting to membrane;0.00467029179403509!GO:0016529;sarcoplasmic reticulum;0.00500307092485971!GO:0016528;sarcoplasm;0.00500307092485971!GO:0016126;sterol biosynthetic process;0.00500723324970166!GO:0035258;steroid hormone receptor binding;0.00503003394733164!GO:0005859;muscle myosin complex;0.00510508479264879!GO:0003702;RNA polymerase II transcription factor activity;0.00518503959766909!GO:0003012;muscle system process;0.00539563370695833!GO:0006936;muscle contraction;0.00539563370695833!GO:0030134;ER to Golgi transport vesicle;0.00563983576489717!GO:0033116;ER-Golgi intermediate compartment membrane;0.00567908715974429!GO:0043067;regulation of programmed cell death;0.00574790666458938!GO:0006402;mRNA catabolic process;0.00574790666458938!GO:0043021;ribonucleoprotein binding;0.00584679689586745!GO:0030695;GTPase regulator activity;0.00595964753743673!GO:0016853;isomerase activity;0.00596501423547607!GO:0044427;chromosomal part;0.00614290831984968!GO:0030137;COPI-coated vesicle;0.00619897160640568!GO:0009117;nucleotide metabolic process;0.00646331376004536!GO:0030118;clathrin coat;0.00651042956140087!GO:0043488;regulation of mRNA stability;0.00651042956140087!GO:0043487;regulation of RNA stability;0.00651042956140087!GO:0030127;COPII vesicle coat;0.00653708862411618!GO:0012507;ER to Golgi transport vesicle membrane;0.00653708862411618!GO:0019843;rRNA binding;0.00684764685437395!GO:0003724;RNA helicase activity;0.0071110644324737!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0071110644324737!GO:0048518;positive regulation of biological process;0.00734789669271362!GO:0006891;intra-Golgi vesicle-mediated transport;0.00744375578624091!GO:0000314;organellar small ribosomal subunit;0.00746188844703255!GO:0005763;mitochondrial small ribosomal subunit;0.00746188844703255!GO:0000902;cell morphogenesis;0.00767201876074545!GO:0032989;cellular structure morphogenesis;0.00767201876074545!GO:0005201;extracellular matrix structural constituent;0.00781007469980831!GO:0006818;hydrogen transport;0.00803430539827213!GO:0016584;nucleosome positioning;0.00810194317450514!GO:0031901;early endosome membrane;0.00834312919146964!GO:0030832;regulation of actin filament length;0.00841645444568806!GO:0015992;proton transport;0.00848726446687863!GO:0016363;nuclear matrix;0.00848883673780391!GO:0032535;regulation of cellular component size;0.00850982122159454!GO:0005100;Rho GTPase activator activity;0.00851715482419618!GO:0003746;translation elongation factor activity;0.00870731849686544!GO:0051168;nuclear export;0.00883241084786151!GO:0043284;biopolymer biosynthetic process;0.00883241084786151!GO:0048500;signal recognition particle;0.00909962797282807!GO:0031032;actomyosin structure organization and biogenesis;0.00922580206117764!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00922952273906713!GO:0001666;response to hypoxia;0.00922952273906713!GO:0009108;coenzyme biosynthetic process;0.00942378587573562!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00957663610424787!GO:0030132;clathrin coat of coated pit;0.00968701984337017!GO:0030658;transport vesicle membrane;0.00978280094768165!GO:0003729;mRNA binding;0.0098045923631661!GO:0018196;peptidyl-asparagine modification;0.00985140504803878!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00985140504803878!GO:0017166;vinculin binding;0.0100362445242243!GO:0005913;cell-cell adherens junction;0.0100417352184774!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0100417352184774!GO:0051087;chaperone binding;0.0103779239273296!GO:0006839;mitochondrial transport;0.0105652642174223!GO:0030041;actin filament polymerization;0.0106246268126138!GO:0001527;microfibril;0.01121993826936!GO:0000139;Golgi membrane;0.0113709378311175!GO:0040008;regulation of growth;0.0114361465522295!GO:0016460;myosin II complex;0.0116818117579419!GO:0008610;lipid biosynthetic process;0.0117413563076518!GO:0030100;regulation of endocytosis;0.0117754339942754!GO:0019222;regulation of metabolic process;0.0118264127012567!GO:0030055;cell-matrix junction;0.0124246909711088!GO:0045792;negative regulation of cell size;0.0128152244379292!GO:0042692;muscle cell differentiation;0.0130067802320609!GO:0005637;nuclear inner membrane;0.0132587566943371!GO:0030518;steroid hormone receptor signaling pathway;0.0133389868063924!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0133721529428094!GO:0006892;post-Golgi vesicle-mediated transport;0.013427540651556!GO:0009081;branched chain family amino acid metabolic process;0.0135127720742383!GO:0008139;nuclear localization sequence binding;0.0136201384949119!GO:0007167;enzyme linked receptor protein signaling pathway;0.0136792516483861!GO:0030308;negative regulation of cell growth;0.0137536448179496!GO:0030934;anchoring collagen;0.014365513797948!GO:0006695;cholesterol biosynthetic process;0.0145905529090758!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0153366152366985!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0154484258178083!GO:0045047;protein targeting to ER;0.0154484258178083!GO:0030521;androgen receptor signaling pathway;0.0155665566228006!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0155665566228006!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0158241810549199!GO:0030659;cytoplasmic vesicle membrane;0.0158241810549199!GO:0008287;protein serine/threonine phosphatase complex;0.016000505062162!GO:0005924;cell-substrate adherens junction;0.0161553598525!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.01666032088597!GO:0043681;protein import into mitochondrion;0.0167711349346495!GO:0016491;oxidoreductase activity;0.0168314249319936!GO:0017022;myosin binding;0.0170135763475756!GO:0000278;mitotic cell cycle;0.0178226703092503!GO:0015631;tubulin binding;0.0178899346866237!GO:0000059;protein import into nucleus, docking;0.0178899346866237!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0181865399335193!GO:0006607;NLS-bearing substrate import into nucleus;0.0182250636522658!GO:0012506;vesicle membrane;0.0187072958478926!GO:0006364;rRNA processing;0.0187369661580108!GO:0005862;muscle thin filament tropomyosin;0.0187369661580108!GO:0019208;phosphatase regulator activity;0.0190503603915767!GO:0008312;7S RNA binding;0.0196709486256498!GO:0045445;myoblast differentiation;0.0203377537544655!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0213795189927088!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0213795189927088!GO:0007050;cell cycle arrest;0.0216775478070021!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0218338316682245!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0218338316682245!GO:0016072;rRNA metabolic process;0.0220618410689192!GO:0051146;striated muscle cell differentiation;0.0227089206185709!GO:0030674;protein binding, bridging;0.0227332374738829!GO:0043034;costamere;0.0230821558198708!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0234723764241363!GO:0007243;protein kinase cascade;0.0235159705830551!GO:0008064;regulation of actin polymerization and/or depolymerization;0.023612948137835!GO:0046314;phosphocreatine biosynthetic process;0.023612948137835!GO:0006603;phosphocreatine metabolic process;0.023612948137835!GO:0008047;enzyme activator activity;0.0239313695447871!GO:0005925;focal adhesion;0.0243862365315757!GO:0005099;Ras GTPase activator activity;0.0243862365315757!GO:0003711;transcription elongation regulator activity;0.02502590052774!GO:0005096;GTPase activator activity;0.0251764345018082!GO:0005869;dynactin complex;0.0252612844473978!GO:0006942;regulation of striated muscle contraction;0.0252781113473567!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0254991749797758!GO:0015399;primary active transmembrane transporter activity;0.0254991749797758!GO:0006950;response to stress;0.0262292966502467!GO:0030119;AP-type membrane coat adaptor complex;0.0262877668447112!GO:0030660;Golgi-associated vesicle membrane;0.0269364438402092!GO:0051259;protein oligomerization;0.0269891038488518!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0271585185628457!GO:0042585;germinal vesicle;0.0273484277418962!GO:0022415;viral reproductive process;0.0285342349752997!GO:0009967;positive regulation of signal transduction;0.0289482941252872!GO:0045045;secretory pathway;0.0291162673105438!GO:0006937;regulation of muscle contraction;0.0291808111506501!GO:0008147;structural constituent of bone;0.029797755290687!GO:0051260;protein homooligomerization;0.0298150459363678!GO:0048659;smooth muscle cell proliferation;0.0315922379946729!GO:0006633;fatty acid biosynthetic process;0.0319863449461603!GO:0051101;regulation of DNA binding;0.0320453686481626!GO:0044433;cytoplasmic vesicle part;0.0321191527586526!GO:0048154;S100 beta binding;0.032341581675269!GO:0042805;actinin binding;0.0334875840943984!GO:0031529;ruffle organization and biogenesis;0.0339998820380115!GO:0006635;fatty acid beta-oxidation;0.034284003828775!GO:0016408;C-acyltransferase activity;0.0350586404928103!GO:0001944;vasculature development;0.0358966751149513!GO:0045663;positive regulation of myoblast differentiation;0.0362432625355765!GO:0005584;collagen type I;0.0367782048603977!GO:0008286;insulin receptor signaling pathway;0.0371740522059111!GO:0019904;protein domain specific binding;0.0375231100542294!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0375700911776892!GO:0048660;regulation of smooth muscle cell proliferation;0.039258526950203!GO:0035035;histone acetyltransferase binding;0.0396923325754625!GO:0048041;focal adhesion formation;0.0398638484501654!GO:0008186;RNA-dependent ATPase activity;0.0411712902016213!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0416517665566435!GO:0030057;desmosome;0.0416517665566435!GO:0051049;regulation of transport;0.0419662468176033!GO:0050811;GABA receptor binding;0.042089312907636!GO:0044255;cellular lipid metabolic process;0.0422465577367289!GO:0006376;mRNA splice site selection;0.0424198785211724!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0424198785211724!GO:0003756;protein disulfide isomerase activity;0.0437809070893151!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0437809070893151!GO:0001568;blood vessel development;0.0438479302898508!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0444215219289619!GO:0051270;regulation of cell motility;0.0448239828328787!GO:0030032;lamellipodium biogenesis;0.0448239828328787!GO:0030131;clathrin adaptor complex;0.0449340705953563!GO:0005916;fascia adherens;0.0459722917628901!GO:0044448;cell cortex part;0.0459722917628901!GO:0016787;hydrolase activity;0.0460775046321881!GO:0055001;muscle cell development;0.0461202010060896!GO:0030239;myofibril assembly;0.0461202010060896!GO:0055002;striated muscle cell development;0.0461202010060896!GO:0006399;tRNA metabolic process;0.0461938280602255!GO:0030911;TPR domain binding;0.0469973426951832!GO:0005521;lamin binding;0.0475677175745766!GO:0005832;chaperonin-containing T-complex;0.0475677175745766!GO:0050681;androgen receptor binding;0.0477659372510021!GO:0005790;smooth endoplasmic reticulum;0.0477773692844156!GO:0007006;mitochondrial membrane organization and biogenesis;0.0480824241714239!GO:0030522;intracellular receptor-mediated signaling pathway;0.049324070839751 | |||
|sample_id=10065 | |sample_id=10065 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=TBP:4.85936731923;MEF2{A,B,C,D}:3.16765596813;IKZF2:3.0389512701;SPZ1:2.87070752438;ZNF384:2.85707313032;MYBL2:2.6711013797;NKX2-3_NKX2-5:2.5933832806;HOX{A4,D4}:2.540546428;ESR1:2.53755918743;SOX5:2.52320987789;FOXL1:2.48561232928;NR5A1,2:2.47180110637;TAL1_TCF{3,4,12}:2.44095410915;TOPORS:2.41871705473;TBX4,5:2.36981473838;NR1H4:2.27870683521;KLF4:2.1408937539;NKX2-1,4:2.10133865592;NANOG:2.05686941254;MAZ:1.96182958015;TFAP2{A,C}:1.9527502693;PAX6:1.9150028987;ZNF238:1.91070433567;FOXA2:1.90206484625;IKZF1:1.87675238773;NR6A1:1.8607983028;POU3F1..4:1.85369847887;BPTF:1.80542532936;GCM1,2:1.76950462778;XBP1:1.76782303607;FOXM1:1.69642749926;TGIF1:1.67073432021;MED-1{core}:1.64410926243;PDX1:1.64129870007;RBPJ:1.62863439701;FOXP1:1.62201876255;GLI1..3:1.61704982852;TEF:1.56695127553;SRF:1.53654929948;TLX2:1.53326722727;LHX3,4:1.52659301865;ZIC1..3:1.47317555487;MZF1:1.45630158223;GTF2I:1.43843830447;T:1.43390232793;GATA4:1.37729800367;FOXD3:1.37289858115;HIC1:1.3606935701;TEAD1:1.35375945286;ALX1:1.35077814836;RXRA_VDR{dimer}:1.33177437489;ZNF148:1.29261910074;HMGA1,2:1.28604773969;TFAP4:1.27853692845;GFI1:1.26829511252;TFCP2:1.25190652646;SMAD1..7,9:1.23540123324;NKX6-1,2:1.21567909653;SP1:1.21001390344;TLX1..3_NFIC{dimer}:1.18340728907;SNAI1..3:1.15161547268;PRDM1:1.13860005807;PATZ1:1.13712050709;FOXO1,3,4:1.10068562189;ATF2:1.09424966789;GTF2A1,2:1.09279682298;ALX4:1.09278940304;PITX1..3:1.03081225474;MYFfamily:1.02380752346;MTF1:1.022303048;EP300:1.01995589878;POU1F1:1.01808438205;NKX3-2:1.01738029835;EGR1..3:0.986473886241;POU6F1:0.978883255923;LMO2:0.968080236795;XCPE1{core}:0.922259691286;FOXQ1:0.910463433104;HSF1,2:0.874353687105;GFI1B:0.871966468025;ZEB1:0.861969148493;MAFB:0.858787479226;ATF6:0.839507675235;EVI1:0.833539970951;DBP:0.832035596753;POU5F1:0.815815085871;NFATC1..3:0.812967195972;UFEwm:0.809747625776;HOX{A5,B5}:0.793261973255;NFE2L1:0.783240464859;PAX5:0.78137540367;NHLH1,2:0.747706146761;SOX{8,9,10}:0.744750663574;CDC5L:0.743691546752;MTE{core}:0.724236245553;VSX1,2:0.694840042734;PAX4:0.688456650297;GZF1:0.670821484248;TFAP2B:0.660511235643;GATA6:0.630983028747;MYOD1:0.628301967265;BREu{core}:0.61158183788;RREB1:0.599621870497;AR:0.591580075;NKX3-1:0.589110238399;HBP1_HMGB_SSRP1_UBTF:0.585167012446;HMX1:0.580812204835;AIRE:0.491418132532;YY1:0.490553234756;FOX{D1,D2}:0.438201896187;NANOG{mouse}:0.432643738621;HOX{A6,A7,B6,B7}:0.384038724335;FOXP3:0.373917643002;PAX1,9:0.332050126719;SOX17:0.317231825147;ZFP161:0.311789252458;STAT5{A,B}:0.306452801982;TP53:0.294214393692;EBF1:0.290487738946;NR3C1:0.28945670032;SOX2:0.284811020773;ESRRA:0.281163753559;IRF7:0.275994110803;CUX2:0.215768324357;EN1,2:0.209923135498;FOX{F1,F2,J1}:0.132167571719;ZBTB6:0.13022926233;HNF4A_NR2F1,2:0.117192060729;PBX1:0.114790681338;REST:0.093412427572;HAND1,2:0.0852958060605;NFIX:0.0850936745881;LEF1_TCF7_TCF7L1,2:0.0811450539986;STAT2,4,6:0.0223422080539;ZNF423:-0.00507176732639;HNF1A:-0.00680752042297;FOXN1:-0.0641455958645;ZNF143:-0.0941912226869;RFX2..5_RFXANK_RFXAP:-0.124518271836;RORA:-0.15087740148;NFY{A,B,C}:-0.155465982061;CDX1,2,4:-0.20032590567;STAT1,3:-0.220828620159;FOX{I1,J2}:-0.23154331391;SREBF1,2:-0.235082906181;ATF4:-0.242664622276;E2F1..5:-0.248522132826;IRF1,2:-0.264369607724;FOSL2:-0.265731244509;RXR{A,B,G}:-0.283299697075;JUN:-0.301283488047;NRF1:-0.314093914733;SPI1:-0.316939704332;SPIB:-0.335582183305;PRRX1,2:-0.351706710947;OCT4_SOX2{dimer}:-0.372159917643;ZBTB16:-0.3733445808;ETS1,2:-0.374684040998;PAX3,7:-0.384833113843;ARID5B:-0.389288226335;HLF:-0.447036203864;ELF1,2,4:-0.447821473637;RFX1:-0.470907712975;PAX2:-0.485774781248;NFIL3:-0.489549725728;DMAP1_NCOR{1,2}_SMARC:-0.54281328297;FOS_FOS{B,L1}_JUN{B,D}:-0.546288354607;CEBPA,B_DDIT3:-0.58617247714;NFKB1_REL_RELA:-0.593821792989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.612902716521;HES1:-0.61387534175;RUNX1..3:-0.63571163083;POU2F1..3:-0.701223531605;TFDP1:-0.71165476877;ATF5_CREB3:-0.721346868008;CREB1:-0.736115095976;HOXA9_MEIS1:-0.741103534406;ADNP_IRX_SIX_ZHX:-0.795428127847;ONECUT1,2:-0.798003649324;bHLH_family:-0.837980323619;AHR_ARNT_ARNT2:-0.845217196631;BACH2:-0.950579019803;MYB:-0.96713648506;PAX8:-0.971271789131;NFE2:-0.98909454085;NFE2L2:-1.03977253337;PPARG:-1.16389431307;NKX2-2,8:-1.20958215534;HIF1A:-1.2298778421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.23180323637;CRX:-1.26982266656;ELK1,4_GABP{A,B1}:-1.28906762324 | |top_motifs=TBP:4.85936731923;MEF2{A,B,C,D}:3.16765596813;IKZF2:3.0389512701;SPZ1:2.87070752438;ZNF384:2.85707313032;MYBL2:2.6711013797;NKX2-3_NKX2-5:2.5933832806;HOX{A4,D4}:2.540546428;ESR1:2.53755918743;SOX5:2.52320987789;FOXL1:2.48561232928;NR5A1,2:2.47180110637;TAL1_TCF{3,4,12}:2.44095410915;TOPORS:2.41871705473;TBX4,5:2.36981473838;NR1H4:2.27870683521;KLF4:2.1408937539;NKX2-1,4:2.10133865592;NANOG:2.05686941254;MAZ:1.96182958015;TFAP2{A,C}:1.9527502693;PAX6:1.9150028987;ZNF238:1.91070433567;FOXA2:1.90206484625;IKZF1:1.87675238773;NR6A1:1.8607983028;POU3F1..4:1.85369847887;BPTF:1.80542532936;GCM1,2:1.76950462778;XBP1:1.76782303607;FOXM1:1.69642749926;TGIF1:1.67073432021;MED-1{core}:1.64410926243;PDX1:1.64129870007;RBPJ:1.62863439701;FOXP1:1.62201876255;GLI1..3:1.61704982852;TEF:1.56695127553;SRF:1.53654929948;TLX2:1.53326722727;LHX3,4:1.52659301865;ZIC1..3:1.47317555487;MZF1:1.45630158223;GTF2I:1.43843830447;T:1.43390232793;GATA4:1.37729800367;FOXD3:1.37289858115;HIC1:1.3606935701;TEAD1:1.35375945286;ALX1:1.35077814836;RXRA_VDR{dimer}:1.33177437489;ZNF148:1.29261910074;HMGA1,2:1.28604773969;TFAP4:1.27853692845;GFI1:1.26829511252;TFCP2:1.25190652646;SMAD1..7,9:1.23540123324;NKX6-1,2:1.21567909653;SP1:1.21001390344;TLX1..3_NFIC{dimer}:1.18340728907;SNAI1..3:1.15161547268;PRDM1:1.13860005807;PATZ1:1.13712050709;FOXO1,3,4:1.10068562189;ATF2:1.09424966789;GTF2A1,2:1.09279682298;ALX4:1.09278940304;PITX1..3:1.03081225474;MYFfamily:1.02380752346;MTF1:1.022303048;EP300:1.01995589878;POU1F1:1.01808438205;NKX3-2:1.01738029835;EGR1..3:0.986473886241;POU6F1:0.978883255923;LMO2:0.968080236795;XCPE1{core}:0.922259691286;FOXQ1:0.910463433104;HSF1,2:0.874353687105;GFI1B:0.871966468025;ZEB1:0.861969148493;MAFB:0.858787479226;ATF6:0.839507675235;EVI1:0.833539970951;DBP:0.832035596753;POU5F1:0.815815085871;NFATC1..3:0.812967195972;UFEwm:0.809747625776;HOX{A5,B5}:0.793261973255;NFE2L1:0.783240464859;PAX5:0.78137540367;NHLH1,2:0.747706146761;SOX{8,9,10}:0.744750663574;CDC5L:0.743691546752;MTE{core}:0.724236245553;VSX1,2:0.694840042734;PAX4:0.688456650297;GZF1:0.670821484248;TFAP2B:0.660511235643;GATA6:0.630983028747;MYOD1:0.628301967265;BREu{core}:0.61158183788;RREB1:0.599621870497;AR:0.591580075;NKX3-1:0.589110238399;HBP1_HMGB_SSRP1_UBTF:0.585167012446;HMX1:0.580812204835;AIRE:0.491418132532;YY1:0.490553234756;FOX{D1,D2}:0.438201896187;NANOG{mouse}:0.432643738621;HOX{A6,A7,B6,B7}:0.384038724335;FOXP3:0.373917643002;PAX1,9:0.332050126719;SOX17:0.317231825147;ZFP161:0.311789252458;STAT5{A,B}:0.306452801982;TP53:0.294214393692;EBF1:0.290487738946;NR3C1:0.28945670032;SOX2:0.284811020773;ESRRA:0.281163753559;IRF7:0.275994110803;CUX2:0.215768324357;EN1,2:0.209923135498;FOX{F1,F2,J1}:0.132167571719;ZBTB6:0.13022926233;HNF4A_NR2F1,2:0.117192060729;PBX1:0.114790681338;REST:0.093412427572;HAND1,2:0.0852958060605;NFIX:0.0850936745881;LEF1_TCF7_TCF7L1,2:0.0811450539986;STAT2,4,6:0.0223422080539;ZNF423:-0.00507176732639;HNF1A:-0.00680752042297;FOXN1:-0.0641455958645;ZNF143:-0.0941912226869;RFX2..5_RFXANK_RFXAP:-0.124518271836;RORA:-0.15087740148;NFY{A,B,C}:-0.155465982061;CDX1,2,4:-0.20032590567;STAT1,3:-0.220828620159;FOX{I1,J2}:-0.23154331391;SREBF1,2:-0.235082906181;ATF4:-0.242664622276;E2F1..5:-0.248522132826;IRF1,2:-0.264369607724;FOSL2:-0.265731244509;RXR{A,B,G}:-0.283299697075;JUN:-0.301283488047;NRF1:-0.314093914733;SPI1:-0.316939704332;SPIB:-0.335582183305;PRRX1,2:-0.351706710947;OCT4_SOX2{dimer}:-0.372159917643;ZBTB16:-0.3733445808;ETS1,2:-0.374684040998;PAX3,7:-0.384833113843;ARID5B:-0.389288226335;HLF:-0.447036203864;ELF1,2,4:-0.447821473637;RFX1:-0.470907712975;PAX2:-0.485774781248;NFIL3:-0.489549725728;DMAP1_NCOR{1,2}_SMARC:-0.54281328297;FOS_FOS{B,L1}_JUN{B,D}:-0.546288354607;CEBPA,B_DDIT3:-0.58617247714;NFKB1_REL_RELA:-0.593821792989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.612902716521;HES1:-0.61387534175;RUNX1..3:-0.63571163083;POU2F1..3:-0.701223531605;TFDP1:-0.71165476877;ATF5_CREB3:-0.721346868008;CREB1:-0.736115095976;HOXA9_MEIS1:-0.741103534406;ADNP_IRX_SIX_ZHX:-0.795428127847;ONECUT1,2:-0.798003649324;bHLH_family:-0.837980323619;AHR_ARNT_ARNT2:-0.845217196631;BACH2:-0.950579019803;MYB:-0.96713648506;PAX8:-0.971271789131;NFE2:-0.98909454085;NFE2L2:-1.03977253337;PPARG:-1.16389431307;NKX2-2,8:-1.20958215534;HIF1A:-1.2298778421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.23180323637;CRX:-1.26982266656;ELK1,4_GABP{A,B1}:-1.28906762324 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10065-101I2;search_select_hide=table117:FF:10065-101I2 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | skin, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11774 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11774
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11774
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0893 |
| 10 | 10 | 0.116 |
| 100 | 100 | 0.485 |
| 101 | 101 | 0.917 |
| 102 | 102 | 0.348 |
| 103 | 103 | 0.0738 |
| 104 | 104 | 0.781 |
| 105 | 105 | 0.84 |
| 106 | 106 | 0.906 |
| 107 | 107 | 0.235 |
| 108 | 108 | 0.454 |
| 109 | 109 | 0.00175 |
| 11 | 11 | 0.0858 |
| 110 | 110 | 0.266 |
| 111 | 111 | 0.153 |
| 112 | 112 | 0.714 |
| 113 | 113 | 0.00362 |
| 114 | 114 | 0.0398 |
| 115 | 115 | 0.0425 |
| 116 | 116 | 0.801 |
| 117 | 117 | 0.00496 |
| 118 | 118 | 0.0201 |
| 119 | 119 | 0.644 |
| 12 | 12 | 0.383 |
| 120 | 120 | 0.664 |
| 121 | 121 | 0.851 |
| 122 | 122 | 0.0393 |
| 123 | 123 | 0.837 |
| 124 | 124 | 0.328 |
| 125 | 125 | 0.347 |
| 126 | 126 | 0.79 |
| 127 | 127 | 0.209 |
| 128 | 128 | 0.847 |
| 129 | 129 | 0.904 |
| 13 | 13 | 0.299 |
| 130 | 130 | 0.99 |
| 131 | 131 | 0.911 |
| 132 | 132 | 0.0351 |
| 133 | 133 | 0.302 |
| 134 | 134 | 0.506 |
| 135 | 135 | 0.737 |
| 136 | 136 | 0.17 |
| 137 | 137 | 0.498 |
| 138 | 138 | 0.485 |
| 139 | 139 | 0.238 |
| 14 | 14 | 0.47 |
| 140 | 140 | 0.479 |
| 141 | 141 | 0.517 |
| 142 | 142 | 0.735 |
| 143 | 143 | 0.00189 |
| 144 | 144 | 0.991 |
| 145 | 145 | 0.603 |
| 146 | 146 | 0.528 |
| 147 | 147 | 0.238 |
| 148 | 148 | 0.292 |
| 149 | 149 | 0.696 |
| 15 | 15 | 0.0693 |
| 150 | 150 | 0.413 |
| 151 | 151 | 0.899 |
| 152 | 152 | 0.732 |
| 153 | 153 | 0.391 |
| 154 | 154 | 0.538 |
| 155 | 155 | 0.379 |
| 156 | 156 | 0.296 |
| 157 | 157 | 0.456 |
| 158 | 158 | 0.0414 |
| 159 | 159 | 0.771 |
| 16 | 16 | 0.651 |
| 160 | 160 | 0.867 |
| 161 | 161 | 0.393 |
| 162 | 162 | 0.0611 |
| 163 | 163 | 0.29 |
| 164 | 164 | 0.109 |
| 165 | 165 | 0.481 |
| 166 | 166 | 0.0269 |
| 167 | 167 | 0.0348 |
| 168 | 168 | 0.673 |
| 169 | 169 | 0.304 |
| 17 | 17 | 0.487 |
| 18 | 18 | 0.0374 |
| 19 | 19 | 0.398 |
| 2 | 2 | 0.0949 |
| 20 | 20 | 0.0337 |
| 21 | 21 | 0.811 |
| 22 | 22 | 0.582 |
| 23 | 23 | 0.48 |
| 24 | 24 | 0.0782 |
| 25 | 25 | 0.472 |
| 26 | 26 | 0.432 |
| 27 | 27 | 0.619 |
| 28 | 28 | 0.841 |
| 29 | 29 | 0.0246 |
| 3 | 3 | 0.259 |
| 30 | 30 | 0.0259 |
| 31 | 31 | 0.892 |
| 32 | 32 | 6.96111e-8 |
| 33 | 33 | 0.21 |
| 34 | 34 | 0.434 |
| 35 | 35 | 0.316 |
| 36 | 36 | 0.036 |
| 37 | 37 | 0.041 |
| 38 | 38 | 0.536 |
| 39 | 39 | 0.133 |
| 4 | 4 | 0.592 |
| 40 | 40 | 0.0519 |
| 41 | 41 | 0.0896 |
| 42 | 42 | 0.219 |
| 43 | 43 | 0.177 |
| 44 | 44 | 0.841 |
| 45 | 45 | 0.553 |
| 46 | 46 | 0.314 |
| 47 | 47 | 0.136 |
| 48 | 48 | 0.26 |
| 49 | 49 | 0.129 |
| 5 | 5 | 0.416 |
| 50 | 50 | 0.612 |
| 51 | 51 | 0.567 |
| 52 | 52 | 0.378 |
| 53 | 53 | 0.579 |
| 54 | 54 | 0.987 |
| 55 | 55 | 0.423 |
| 56 | 56 | 0.489 |
| 57 | 57 | 0.927 |
| 58 | 58 | 0.481 |
| 59 | 59 | 0.83 |
| 6 | 6 | 0.623 |
| 60 | 60 | 0.893 |
| 61 | 61 | 0.0599 |
| 62 | 62 | 0.535 |
| 63 | 63 | 0.78 |
| 64 | 64 | 0.297 |
| 65 | 65 | 0.956 |
| 66 | 66 | 0.0314 |
| 67 | 67 | 0.165 |
| 68 | 68 | 0.672 |
| 69 | 69 | 0.956 |
| 7 | 7 | 0.504 |
| 70 | 70 | 0.23 |
| 71 | 71 | 0.053 |
| 72 | 72 | 0.523 |
| 73 | 73 | 0.0589 |
| 74 | 74 | 0.302 |
| 75 | 75 | 0.00768 |
| 76 | 76 | 0.0252 |
| 77 | 77 | 0.677 |
| 78 | 78 | 0.896 |
| 79 | 79 | 0.979 |
| 8 | 8 | 0.336 |
| 80 | 80 | 0.262 |
| 81 | 81 | 0.924 |
| 82 | 82 | 0.504 |
| 83 | 83 | 0.683 |
| 84 | 84 | 0.697 |
| 85 | 85 | 0.764 |
| 86 | 86 | 0.27 |
| 87 | 87 | 0.00325 |
| 88 | 88 | 0.665 |
| 89 | 89 | 0.833 |
| 9 | 9 | 0.875 |
| 90 | 90 | 0.097 |
| 91 | 91 | 0.139 |
| 92 | 92 | 0.896 |
| 93 | 93 | 0.614 |
| 94 | 94 | 0.075 |
| 95 | 95 | 0.00531 |
| 96 | 96 | 0.508 |
| 97 | 97 | 0.956 |
| 98 | 98 | 0.226 |
| 99 | 99 | 0.07 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11774
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010065 human skin - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000014 (zone of skin)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0007029 (surface)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010065 (human skin - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
